breseq  version 0.29.0  revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation freq annotation gene description
RA 83,590 G→T 15.1% intergenic (‑61/+32) leuA ← / ← leuL 2‑isopropylmalate synthase/leu operon leader peptide
MC JC 257,908 Δ776 bp 100% [crl] [crl]
RA 263,172 A→C 100% pseudogene (41/63 nt) ykfN ← pseudogene, YdiA family
RA 756,929 T→A 28.5% D341E (GAT→GAA sdhA → succinate dehydrogenase, flavoprotein subunit
RA 770,679 G→T 16.1% intergenic (+68/‑779) mngB → / → cydA alpha‑mannosidase/cytochrome d terminal oxidase, subunit I
RA 770,682 A→C 16.1% intergenic (+71/‑776) mngB → / → cydA alpha‑mannosidase/cytochrome d terminal oxidase, subunit I
RA 922,316:1 +C 15.0% intergenic (+23/+50) macB → / ← cspD macrolide ABC transporter peremase/ATPase/inhibitor of DNA replication, cold shock protein homolog
RA 1,159,335 G→T 15.5% intergenic (+33/+27) ptsG → / ← fhuE fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter
RA 1,159,336 A→C 16.0% intergenic (+34/+26) ptsG → / ← fhuE fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter
RA 1,260,901 C→T 15.8% intergenic (‑98/+27) dauA ← / ← prs C4‑dicarboxylic acid transporter/phosphoribosylpyrophosphate synthase
RA 1,756,553 A→T 100% K286* (AAA→TAA)  pykF → pyruvate kinase I
RA 1,770,203 T→A 16.9% intergenic (+17/‑412) ydiK → / → ydiL UPF0118 family inner membrane protein/putative HTH domain DNA‑binding protein
RA 1,770,204 C→G 17.6% intergenic (+18/‑411) ydiK → / → ydiL UPF0118 family inner membrane protein/putative HTH domain DNA‑binding protein
RA 1,770,205 T→A 16.9% intergenic (+19/‑410) ydiK → / → ydiL UPF0118 family inner membrane protein/putative HTH domain DNA‑binding protein
RA 1,914,888 T→G 100% Q216P (CAG→CCG)  proQ ← RNA chaperone, putative ProP translation regulator
RA 1,926,882 C→A 17.9% G653V (GGC→GTC)  ptrB ← protease II
RA 1,926,888 C→A 18.1% G651V (GGC→GTC)  ptrB ← protease II
RA 1,926,891 G→C 18.3% S650* (TCA→TGA)  ptrB ← protease II
RA 1,926,894 T→G 18.2% D649A (GAC→GCC)  ptrB ← protease II
RA 1,926,900 T→G 16.8% D647A (GAC→GCC)  ptrB ← protease II
RA 1,946,035 G→T 18.2% intergenic (‑59/+80) ruvA ← / ← yobI component of RuvABC resolvasome, regulatory subunit/uncharacterized protein
RA 1,946,036 A→C 18.5% intergenic (‑60/+79) ruvA ← / ← yobI component of RuvABC resolvasome, regulatory subunit/uncharacterized protein
MC JC 1,978,503 Δ776 bp 100% insB1insA insB1, insA
JC JC 1,979,486 IS5 (+) +4 bp 100% intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein
RA 2,173,363 Δ2 bp 100% intergenic (‑1/+1) gatC ← / ← gatC pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
RA 2,391,414 C→G 17.0% R31P (CGA→CCA)  nuoN ← NADH:ubiquinone oxidoreductase, membrane subunit N
RA 2,391,417 C→G 16.2% W30S (TGG→TCG)  nuoN ← NADH:ubiquinone oxidoreductase, membrane subunit N
RA 2,810,872 C→T 17.0% H35Y (CAC→TAC) ‡ mprA → transcriptional repressor of microcin B17 synthesis and multidrug efflux
RA 2,810,873 A→G 16.9% H35R (CAC→CGC) ‡ mprA → transcriptional repressor of microcin B17 synthesis and multidrug efflux
RA 3,202,685 A→G 17.2% E265E (GAA→GAG cca → fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase
RA 3,202,686 C→T 16.6% L266F (CTC→TTC)  cca → fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase
RA 3,202,693 C→G 15.7% P268R (CCG→CGG)  cca → fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase
RA 3,248,023 G→A 100% W84* (TGG→TAG)  yqjA → general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter
RA 3,338,928 C→A 100% L107F (TTG→TTT mlaE ← ABC transporter maintaining OM lipid asymmetry, inner membrane permease protein
RA 3,560,455:1 +G 100% intergenic (‑2/+1) glpR ← / ← glpR pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon
RA 3,684,604 G→A 100% Q339* (CAG→TAG)  yhjK ← cyclic‑di‑GMP phosphodiesterase
RA 3,705,970 G→A 22.3% intergenic (‑180/+128) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,705,971 C→A 23.1% intergenic (‑181/+127) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,705,984 T→G 29.9% intergenic (‑194/+114) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,705,985 T→C 29.8% intergenic (‑195/+113) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
MC JC 3,815,859 Δ82 bp 100% [rph][rph] [rph], [rph]
RA 3,900,410 A→T 15.7% P56P (CCT→CCA yieL ← putative xylanase
RA 4,088,091 G→C 18.2% intergenic (+34/+16) yiiG → / ← frvR DUF3829 family lipoprotein/putative frv operon regulator; contains a PTS EIIA domain
RA 4,189,448 C→T 100% Q1367* (CAG→TAG)  rpoC → RNA polymerase, beta prime subunit
RA 4,296,060 C→T 30.7% intergenic (+266/+376) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,296,381:1 +GC 100% intergenic (+587/+55) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,400,313 A→C 100% D9A (GAT→GCT)  hfq → global sRNA chaperone; HF‑I, host factor for RNA phage Q beta replication
RA 4,426,592 T→A 17.5% intergenic (+35/+36) rplI → / ← yjfZ 50S ribosomal subunit protein L9/uncharacterized protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3423823–3424234 3424623–3424238 5–801 85 [0] [81] 83 [rrlD] [rrlD]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 16653NA (NA)15 (0.130) 9/164 NT NA noncoding (1267/1345 nt) IS186 repeat region
?NC_000913 = 16691 NA (NA)noncoding (1305/1345 nt) IS186 repeat region
* ? NC_000913 = 213635NA (NA)19 (0.160) 10/164 NT NA noncoding (4/37 nt) REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 213668 NA (NA)noncoding (37/37 nt) REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 224059 =NA (NA)47 (0.400) 15/164 NT NA noncoding (289/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 224082 = NA (NA)noncoding (312/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
* ? NC_000913 225154 =NA (NA)25 (0.210) 7/168 NT NA noncoding (1384/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 225176 = NA (NA)noncoding (1406/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
* ? NC_000913 = 225998NA (NA)23 (0.190) 13/170 NT NA noncoding (240/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 226015 NA (NA)noncoding (257/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 226815 =NA (NA)8 (0.060) 6/172 NT NA noncoding (1057/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 226840 = NA (NA)noncoding (1082/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 227444NA (NA)17 (0.140) 9/168 NT NA noncoding (1686/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 227459 NA (NA)noncoding (1701/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 228224NA (NA)15 (0.130) 7/166 NT NA noncoding (2466/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 228241 NA (NA)noncoding (2483/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 274347 =NA (NA)22 (0.190) 8/164 NT NA noncoding (803/1195 nt) IS5 repeat region
?NC_000913 274410 = NA (NA)noncoding (740/1195 nt) IS5 repeat region
* ? NC_000913 274384 =NA (NA)16 (0.130) 8/172 NT NA noncoding (766/1195 nt) IS5 repeat region
?NC_000913 274422 = NA (NA)noncoding (728/1195 nt) IS5 repeat region
* ? NC_000913 274620 =NA (NA)24 (0.210) 8/160 NT NA noncoding (530/1195 nt) IS5 repeat region
?NC_000913 274663 = NA (NA)noncoding (487/1195 nt) IS5 repeat region
* ? NC_000913 = 275007NA (NA)40 (0.320) 14/172 NT NA noncoding (143/1195 nt) IS5 repeat region
?NC_000913 = 275025 NA (NA)noncoding (125/1195 nt) IS5 repeat region
* ? NC_000913 = 279841NA (NA)20 (0.170) 9/168 NT NA noncoding (90/768 nt) IS1 repeat region
?NC_000913 = 279852 NA (NA)noncoding (79/768 nt) IS1 repeat region
* ? NC_000913 = 315572NA (NA)17 (0.150) 10/158 NT NA noncoding (344/1255 nt) IS3 repeat region
?NC_000913 = 315588 NA (NA)noncoding (360/1255 nt) IS3 repeat region
* ? NC_000913 = 316201NA (NA)20 (0.170) 8/160 NT NA noncoding (973/1255 nt) IS3 repeat region
?NC_000913 = 316220 NA (NA)noncoding (992/1255 nt) IS3 repeat region
* ? NC_000913 374889 =NA (NA)8 (0.060) 7/172 NT NA intergenic (+8/‑570) mhpE/mhpT 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter
?NC_000913 374925 = NA (NA)intergenic (+44/‑534) mhpE/mhpT 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter
* ? NC_000913 381663 =NA (NA)19 (0.160) 7/164 NT NA noncoding (404/1331 nt) IS2 repeat region
?NC_000913 381703 = NA (NA)noncoding (444/1331 nt) IS2 repeat region
* ? NC_000913 = 381669NA (NA)31 (0.260) 14/164 NT NA noncoding (410/1331 nt) IS2 repeat region
?NC_000913 = 381695 NA (NA)noncoding (436/1331 nt) IS2 repeat region
* ? NC_000913 = 381837NA (NA)13 (0.110) 7/166 NT NA noncoding (578/1331 nt) IS2 repeat region
?NC_000913 = 381852 NA (NA)noncoding (593/1331 nt) IS2 repeat region
* ? NC_000913 = 381910NA (NA)40 (0.330) 12/166 NT NA noncoding (651/1331 nt) IS2 repeat region
?NC_000913 = 381923 NA (NA)noncoding (664/1331 nt) IS2 repeat region
* ? NC_000913 409056 =NA (NA)14 (0.120) 7/164 NT NA noncoding (5/37 nt) REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 409089 = NA (NA)intergenic (+139/+19) ykiA/rdgC pseudogene/nucleoid‑associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function
* ? NC_000913 501448 =NA (NA)6 (0.050) 5/164 NT NA noncoding (5/84 nt) REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 501478 = NA (NA)noncoding (35/84 nt) REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 526259 =NA (NA)10 (0.080) 5/168 NT 100% coding (2999/4281 nt) rhsD Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 526275 = 0 (0.000)coding (3015/4281 nt) rhsD Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 730045NA (NA)11 (0.090) 8/168 NT NA coding (463/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 730067 NA (NA)coding (485/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 900753 =NA (NA)8 (0.070) 6/164 NT NA noncoding (5/87 nt) REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 900783 = NA (NA)noncoding (35/87 nt) REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 937227NA (NA)12 (0.100) 8/162 NT NA noncoding (4/36 nt) REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 937259 NA (NA)noncoding (36/36 nt) REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 1145983NA (NA)8 (0.070) 7/162 NT NA noncoding (56/75 nt) REP101 (repetitive extragenic palindromic) element; contains 2 REP sequences REP101 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 1145994 NA (NA)noncoding (67/75 nt) REP101 (repetitive extragenic palindromic) element; contains 2 REP sequences REP101 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 12994980 (0.000)154 (1.260) 93/170 NT 100% intergenic (+253/‑1684) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
?NC_000913 1300698 = 0 (0.000)intergenic (+1453/‑484) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
* ? NC_000913 = 1432761NA (NA)10 (0.080) 5/170 NT NA coding (351/576 nt) tfaR Rac prophage; putative tail fiber assembly protein
?NC_000913 = 1432785 NA (NA)coding (375/576 nt) tfaR Rac prophage; putative tail fiber assembly protein
* ? NC_000913 = 152220492 (0.720)15 (0.130) 9/158 NT 15.4% coding (862/2103 nt) yncD putative iron outer membrane transporter
?NC_000913 = 1522222 83 (0.730)coding (844/2103 nt) yncD putative iron outer membrane transporter
* ? NC_000913 = 1816343NA (NA)9 (0.070) 5/172 NT NA noncoding (159/189 nt) RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
?NC_000913 = 1816373 NA (NA)noncoding (189/189 nt) RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
* ? NC_000913 = 20668320 (0.000)21 (0.180) 11/160 NT 100% noncoding (522/1195 nt) IS5 repeat region
?NC_000913 = 2066857 NA (NA)noncoding (497/1195 nt) IS5 repeat region
* ? NC_000913 = 220445783 (0.650)16 (0.140) 10/156 NT 15.4% intergenic (+168/‑139) yehK/yehL uncharacterized protein/putative hexameric AAA+ MoxR family ATPase
?NC_000913 = 2204480 103 (0.920)intergenic (+191/‑116) yehK/yehL uncharacterized protein/putative hexameric AAA+ MoxR family ATPase
* ? NC_000913 2252796 =NA (NA)7 (0.060) 6/164 NT NA noncoding (1/91 nt) RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 2252829 = NA (NA)noncoding (34/91 nt) RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 2304654 =NA (NA)11 (0.090) 7/164 NT 100% noncoding (238/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913 2304670 = 0 (0.000)noncoding (254/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
* ? NC_000913 2393131 =NA (NA)15 (0.130) 13/164 NT NA noncoding (1/36 nt) REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 2393163 = NA (NA)noncoding (33/36 nt) REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 2409477 =NA (NA)10 (0.090) 9/162 NT NA intergenic (+16/+43) yfbR/yfbS 5'‑nucleotidase/putative transporter
?NC_000913 2409508 = NA (NA)noncoding (13/19 nt) REP168 (repetitive extragenic palindromic) element; contains 1 REP sequences REP168 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 2593024NA (NA)12 (0.100) 8/164 NT NA noncoding (47/83 nt) REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 2593056 NA (NA)noncoding (79/83 nt) REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 2655066NA (NA)17 (0.140) 7/164 NT NA noncoding (97/97 nt) RIP183 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP183 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 = 2835118 NA (NA)noncoding (52/82 nt) REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 2726200 =NA (NA)60 (0.500) 14/166 NT NA intergenic (‑12/+81) rrfG/rrlG 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon
?NC_000913 2726224 = NA (NA)intergenic (‑36/+57) rrfG/rrlG 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon
* ? NC_000913 2728214 =NA (NA)43 (0.350) 9/170 NT NA noncoding (971/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
?NC_000913 2728240 = NA (NA)noncoding (945/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
* ? NC_000913 2729453 =NA (NA)14 (0.120) 10/158 NT 72.5% intergenic (‑9/+163) gltW/rrsG tRNA‑Glu/16S ribosomal RNA of rrnG operon
?NC_000913 2729475 = 6 (0.050)intergenic (‑31/+141) gltW/rrsG tRNA‑Glu/16S ribosomal RNA of rrnG operon
* ? NC_000913 2729630 =NA (NA)45 (0.370) 10/168 NT NA noncoding (1528/1542 nt) rrsG 16S ribosomal RNA of rrnG operon
?NC_000913 2729652 = NA (NA)noncoding (1506/1542 nt) rrsG 16S ribosomal RNA of rrnG operon
* ? NC_000913 2835099 =NA (NA)12 (0.100) 5/164 NT NA noncoding (33/82 nt) REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3650712 = NA (NA)noncoding (1/100 nt) RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 2837465 =NA (NA)15 (0.130) 6/162 NT NA noncoding (1/27 nt) REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 2837492 = NA (NA)intergenic (‑67/+86) hypF/hydN carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein/formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit
* ? NC_000913 2888334 =NA (NA)8 (0.070) 5/164 NT NA noncoding (1/37 nt) REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 2888367 = NA (NA)noncoding (34/37 nt) REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 2950598 =NA (NA)11 (0.100) 5/158 NT NA intergenic (+25/+37) argA/recD amino acid N‑acetyltransferase and inactive acetylglutamate kinase/exonuclease V (RecBCD complex), alpha chain
?NC_000913 2950615 = NA (NA)noncoding (3/14 nt) REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 3139625 =NA (NA)10 (0.080) 6/164 NT NA noncoding (5/83 nt) REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3139655 = NA (NA)noncoding (35/83 nt) REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 3203112 =NA (NA)10 (0.080) 5/164 NT NA coding (1222/1239 nt) cca fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase
?NC_000913 3203140 = NA (NA)intergenic (+11/+170) cca/bacA fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase/undecaprenyl pyrophosphate phosphatase
* ? NC_000913 3234638 =NA (NA)7 (0.060) 6/164 NT NA noncoding (1/86 nt) REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3234671 = NA (NA)noncoding (34/86 nt) REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 3277819 =NA (NA)12 (0.100) 9/162 NT NA noncoding (1/29 nt) REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 3277844 = NA (NA)noncoding (26/29 nt) REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 3313290NA (NA)7 (0.060) 5/164 NT NA noncoding (39/77 nt) REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 3313328 NA (NA)noncoding (77/77 nt) REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 34238220 (0.000)33 (0.280) 9/166 NT 100% intergenic (‑35/+58) rrfD/rrlD 5S ribosomal RNA of rrnD operon/23S ribosomal RNA of rrnD operon
?NC_000913 4040506 = NA (NA)intergenic (+83/‑11) rrlA/rrfA 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon
* ? NC_000913 3620569 =NA (NA)22 (0.180) 8/166 NT 100% coding (1378/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3620582 = 0 (0.000)coding (1391/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 3622174NA (NA)6 (0.050) 4/168 NT 86.4% coding (2983/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3622205 1 (0.010)coding (3014/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 3622466 =NA (NA)29 (0.240) 9/170 NT 50.3% coding (3275/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3622497 = 30 (0.230)coding (3306/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 3898629 =NA (NA)12 (0.100) 8/162 NT NA intergenic (+20/+42) cbrC/yieK UPF0167 family protein/putative 6‑phosphogluconolactonase
?NC_000913 3898659 = NA (NA)intergenic (+50/+12) cbrC/yieK UPF0167 family protein/putative 6‑phosphogluconolactonase
* ? NC_000913 = 4000222NA (NA)11 (0.090) 8/164 NT NA noncoding (73/103 nt) RIP288 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP288 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 = 4000252 NA (NA)noncoding (103/103 nt) RIP288 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP288 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 = 4035360NA (NA)32 (0.270) 10/166 NT 100% intergenic (+207/‑171) hemG/rrsA protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon
?NC_000913 = 4035384 0 (0.000)intergenic (+231/‑147) hemG/rrsA protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon
* ? NC_000913 4240157 =NA (NA)12 (0.100) 7/164 NT NA noncoding (1/37 nt) REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 4240190 = NA (NA)noncoding (34/37 nt) REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 4295947NA (NA)19 (0.160) 8/164 NT 15.2% noncoding (113/600 nt) RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites
?NC_000913 = 4295980 115 (0.900)noncoding (146/600 nt) RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites
* ? NC_000913 4323250 =NA (NA)11 (0.090) 9/164 NT NA noncoding (5/87 nt) REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4323280 = NA (NA)noncoding (35/87 nt) REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 4325806 =NA (NA)33 (0.280) 8/164 NT 16.7% noncoding (5/583 nt) REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913 4326138 = 138 (1.390)noncoding (337/583 nt) REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences
* ? NC_000913 = 4326350NA (NA)8 (0.070) 5/164 NT NA noncoding (549/583 nt) REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913 = 4326380 NA (NA)noncoding (579/583 nt) REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences
* ? NC_000913 4569947 =NA (NA)10 (0.080) 6/166 NT NA noncoding (2/99 nt) RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 4569970 = NA (NA)noncoding (25/99 nt) RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 = 4587878NA (NA)10 (0.090) 8/162 NT NA noncoding (7/27 nt) REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 4587891 NA (NA)noncoding (20/27 nt) REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences