breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | ||||||
---|---|---|---|---|---|---|
evidence | position | mutation | freq | annotation | gene | description |
RA | 83,590 | G→T | 15.1% | intergenic (‑61/+32) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
RA | 263,172 | A→C | 100% | pseudogene (41/63 nt) | ykfN ← | pseudogene, YdiA family |
RA | 756,929 | T→A | 28.5% | D341E (GAT→GAA) | sdhA → | succinate dehydrogenase, flavoprotein subunit |
RA | 770,679 | G→T | 16.1% | intergenic (+68/‑779) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
RA | 770,682 | A→C | 16.1% | intergenic (+71/‑776) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
RA | 922,316:1 | +C | 15.0% | intergenic (+23/+50) | macB → / ← cspD | macrolide ABC transporter peremase/ATPase/inhibitor of DNA replication, cold shock protein homolog |
RA | 1,159,335 | G→T | 15.5% | intergenic (+33/+27) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
RA | 1,159,336 | A→C | 16.0% | intergenic (+34/+26) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
RA | 1,260,901 | C→T | 15.8% | intergenic (‑98/+27) | dauA ← / ← prs | C4‑dicarboxylic acid transporter/phosphoribosylpyrophosphate synthase |
RA | 1,756,553 | A→T | 100% | K286* (AAA→TAA) | pykF → | pyruvate kinase I |
RA | 1,770,203 | T→A | 16.9% | intergenic (+17/‑412) | ydiK → / → ydiL | UPF0118 family inner membrane protein/putative HTH domain DNA‑binding protein |
RA | 1,770,204 | C→G | 17.6% | intergenic (+18/‑411) | ydiK → / → ydiL | UPF0118 family inner membrane protein/putative HTH domain DNA‑binding protein |
RA | 1,770,205 | T→A | 16.9% | intergenic (+19/‑410) | ydiK → / → ydiL | UPF0118 family inner membrane protein/putative HTH domain DNA‑binding protein |
RA | 1,914,888 | T→G | 100% | Q216P (CAG→CCG) | proQ ← | RNA chaperone, putative ProP translation regulator |
RA | 1,926,882 | C→A | 17.9% | G653V (GGC→GTC) | ptrB ← | protease II |
RA | 1,926,888 | C→A | 18.1% | G651V (GGC→GTC) | ptrB ← | protease II |
RA | 1,926,891 | G→C | 18.3% | S650* (TCA→TGA) | ptrB ← | protease II |
RA | 1,926,894 | T→G | 18.2% | D649A (GAC→GCC) | ptrB ← | protease II |
RA | 1,926,900 | T→G | 16.8% | D647A (GAC→GCC) | ptrB ← | protease II |
RA | 1,946,035 | G→T | 18.2% | intergenic (‑59/+80) | ruvA ← / ← yobI | component of RuvABC resolvasome, regulatory subunit/uncharacterized protein |
RA | 1,946,036 | A→C | 18.5% | intergenic (‑60/+79) | ruvA ← / ← yobI | component of RuvABC resolvasome, regulatory subunit/uncharacterized protein |
MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
RA | 2,173,363 | Δ2 bp | 100% | intergenic (‑1/+1) | gatC ← / ← gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
RA | 2,391,414 | C→G | 17.0% | R31P (CGA→CCA) | nuoN ← | NADH:ubiquinone oxidoreductase, membrane subunit N |
RA | 2,391,417 | C→G | 16.2% | W30S (TGG→TCG) | nuoN ← | NADH:ubiquinone oxidoreductase, membrane subunit N |
RA | 2,810,872 | C→T | 17.0% | H35Y (CAC→TAC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
RA | 2,810,873 | A→G | 16.9% | H35R (CAC→CGC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
RA | 3,202,685 | A→G | 17.2% | E265E (GAA→GAG) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
RA | 3,202,686 | C→T | 16.6% | L266F (CTC→TTC) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
RA | 3,202,693 | C→G | 15.7% | P268R (CCG→CGG) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
RA | 3,248,023 | G→A | 100% | W84* (TGG→TAG) | yqjA → | general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter |
RA | 3,338,928 | C→A | 100% | L107F (TTG→TTT) | mlaE ← | ABC transporter maintaining OM lipid asymmetry, inner membrane permease protein |
RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
RA | 3,684,604 | G→A | 100% | Q339* (CAG→TAG) | yhjK ← | cyclic‑di‑GMP phosphodiesterase |
RA | 3,705,970 | G→A | 22.3% | intergenic (‑180/+128) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
RA | 3,705,971 | C→A | 23.1% | intergenic (‑181/+127) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
RA | 3,705,984 | T→G | 29.9% | intergenic (‑194/+114) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
RA | 3,705,985 | T→C | 29.8% | intergenic (‑195/+113) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
MC JC | 3,815,859 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
RA | 3,900,410 | A→T | 15.7% | P56P (CCT→CCA) | yieL ← | putative xylanase |
RA | 4,088,091 | G→C | 18.2% | intergenic (+34/+16) | yiiG → / ← frvR | DUF3829 family lipoprotein/putative frv operon regulator; contains a PTS EIIA domain |
RA | 4,189,448 | C→T | 100% | Q1367* (CAG→TAG) | rpoC → | RNA polymerase, beta prime subunit |
RA | 4,296,060 | C→T | 30.7% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
RA | 4,296,381:1 | +GC | 100% | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
RA | 4,400,313 | A→C | 100% | D9A (GAT→GCT) | hfq → | global sRNA chaperone; HF‑I, host factor for RNA phage Q beta replication |
RA | 4,426,592 | T→A | 17.5% | intergenic (+35/+36) | rplI → / ← yjfZ | 50S ribosomal subunit protein L9/uncharacterized protein |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 3423823–3424234 | 3424623–3424238 | 5–801 | 85 [0] | [81] 83 | [rrlD] | [rrlD] |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 16653 | NA (NA) | 15 (0.130) | 9/164 | NT | NA | noncoding (1267/1345 nt) | IS186 | repeat region |
? | NC_000913 | = 16691 | NA (NA) | noncoding (1305/1345 nt) | IS186 | repeat region | |||||
* | ? | NC_000913 | = 213635 | NA (NA) | 19 (0.160) | 10/164 | NT | NA | noncoding (4/37 nt) | REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences |
? | NC_000913 | = 213668 | NA (NA) | noncoding (37/37 nt) | REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
* | ? | NC_000913 | 224059 = | NA (NA) | 47 (0.400) | 15/164 | NT | NA | noncoding (289/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
? | NC_000913 | 224082 = | NA (NA) | noncoding (312/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
* | ? | NC_000913 | 225154 = | NA (NA) | 25 (0.210) | 7/168 | NT | NA | noncoding (1384/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
? | NC_000913 | 225176 = | NA (NA) | noncoding (1406/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
* | ? | NC_000913 | = 225998 | NA (NA) | 23 (0.190) | 13/170 | NT | NA | noncoding (240/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
? | NC_000913 | = 226015 | NA (NA) | noncoding (257/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
* | ? | NC_000913 | 226815 = | NA (NA) | 8 (0.060) | 6/172 | NT | NA | noncoding (1057/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
? | NC_000913 | 226840 = | NA (NA) | noncoding (1082/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
* | ? | NC_000913 | = 227444 | NA (NA) | 17 (0.140) | 9/168 | NT | NA | noncoding (1686/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
? | NC_000913 | = 227459 | NA (NA) | noncoding (1701/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
* | ? | NC_000913 | = 228224 | NA (NA) | 15 (0.130) | 7/166 | NT | NA | noncoding (2466/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
? | NC_000913 | = 228241 | NA (NA) | noncoding (2483/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
* | ? | NC_000913 | 274347 = | NA (NA) | 22 (0.190) | 8/164 | NT | NA | noncoding (803/1195 nt) | IS5 | repeat region |
? | NC_000913 | 274410 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
* | ? | NC_000913 | 274384 = | NA (NA) | 16 (0.130) | 8/172 | NT | NA | noncoding (766/1195 nt) | IS5 | repeat region |
? | NC_000913 | 274422 = | NA (NA) | noncoding (728/1195 nt) | IS5 | repeat region | |||||
* | ? | NC_000913 | 274620 = | NA (NA) | 24 (0.210) | 8/160 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
* | ? | NC_000913 | = 275007 | NA (NA) | 40 (0.320) | 14/172 | NT | NA | noncoding (143/1195 nt) | IS5 | repeat region |
? | NC_000913 | = 275025 | NA (NA) | noncoding (125/1195 nt) | IS5 | repeat region | |||||
* | ? | NC_000913 | = 279841 | NA (NA) | 20 (0.170) | 9/168 | NT | NA | noncoding (90/768 nt) | IS1 | repeat region |
? | NC_000913 | = 279852 | NA (NA) | noncoding (79/768 nt) | IS1 | repeat region | |||||
* | ? | NC_000913 | = 315572 | NA (NA) | 17 (0.150) | 10/158 | NT | NA | noncoding (344/1255 nt) | IS3 | repeat region |
? | NC_000913 | = 315588 | NA (NA) | noncoding (360/1255 nt) | IS3 | repeat region | |||||
* | ? | NC_000913 | = 316201 | NA (NA) | 20 (0.170) | 8/160 | NT | NA | noncoding (973/1255 nt) | IS3 | repeat region |
? | NC_000913 | = 316220 | NA (NA) | noncoding (992/1255 nt) | IS3 | repeat region | |||||
* | ? | NC_000913 | 374889 = | NA (NA) | 8 (0.060) | 7/172 | NT | NA | intergenic (+8/‑570) | mhpE/mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
? | NC_000913 | 374925 = | NA (NA) | intergenic (+44/‑534) | mhpE/mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter | |||||
* | ? | NC_000913 | 381663 = | NA (NA) | 19 (0.160) | 7/164 | NT | NA | noncoding (404/1331 nt) | IS2 | repeat region |
? | NC_000913 | 381703 = | NA (NA) | noncoding (444/1331 nt) | IS2 | repeat region | |||||
* | ? | NC_000913 | = 381669 | NA (NA) | 31 (0.260) | 14/164 | NT | NA | noncoding (410/1331 nt) | IS2 | repeat region |
? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
* | ? | NC_000913 | = 381837 | NA (NA) | 13 (0.110) | 7/166 | NT | NA | noncoding (578/1331 nt) | IS2 | repeat region |
? | NC_000913 | = 381852 | NA (NA) | noncoding (593/1331 nt) | IS2 | repeat region | |||||
* | ? | NC_000913 | = 381910 | NA (NA) | 40 (0.330) | 12/166 | NT | NA | noncoding (651/1331 nt) | IS2 | repeat region |
? | NC_000913 | = 381923 | NA (NA) | noncoding (664/1331 nt) | IS2 | repeat region | |||||
* | ? | NC_000913 | 409056 = | NA (NA) | 14 (0.120) | 7/164 | NT | NA | noncoding (5/37 nt) | REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences |
? | NC_000913 | 409089 = | NA (NA) | intergenic (+139/+19) | ykiA/rdgC | pseudogene/nucleoid‑associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function | |||||
* | ? | NC_000913 | 501448 = | NA (NA) | 6 (0.050) | 5/164 | NT | NA | noncoding (5/84 nt) | REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences |
? | NC_000913 | 501478 = | NA (NA) | noncoding (35/84 nt) | REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
* | ? | NC_000913 | 526259 = | NA (NA) | 10 (0.080) | 5/168 | NT | 100% | coding (2999/4281 nt) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
? | NC_000913 | 526275 = | 0 (0.000) | coding (3015/4281 nt) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
* | ? | NC_000913 | = 730045 | NA (NA) | 11 (0.090) | 8/168 | NT | NA | coding (463/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
? | NC_000913 | = 730067 | NA (NA) | coding (485/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor | |||||
* | ? | NC_000913 | 900753 = | NA (NA) | 8 (0.070) | 6/164 | NT | NA | noncoding (5/87 nt) | REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences |
? | NC_000913 | 900783 = | NA (NA) | noncoding (35/87 nt) | REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
* | ? | NC_000913 | = 937227 | NA (NA) | 12 (0.100) | 8/162 | NT | NA | noncoding (4/36 nt) | REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences |
? | NC_000913 | = 937259 | NA (NA) | noncoding (36/36 nt) | REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
* | ? | NC_000913 | = 1145983 | NA (NA) | 8 (0.070) | 7/162 | NT | NA | noncoding (56/75 nt) | REP101 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP101 (repetitive extragenic palindromic) element; contains 2 REP sequences |
? | NC_000913 | = 1145994 | NA (NA) | noncoding (67/75 nt) | REP101 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP101 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
* | ? | NC_000913 | = 1299498 | 0 (0.000) | 154 (1.260) | 93/170 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
* | ? | NC_000913 | = 1432761 | NA (NA) | 10 (0.080) | 5/170 | NT | NA | coding (351/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein |
? | NC_000913 | = 1432785 | NA (NA) | coding (375/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein | |||||
* | ? | NC_000913 | = 1522204 | 92 (0.720) | 15 (0.130) | 9/158 | NT | 15.4% | coding (862/2103 nt) | yncD | putative iron outer membrane transporter |
? | NC_000913 | = 1522222 | 83 (0.730) | coding (844/2103 nt) | yncD | putative iron outer membrane transporter | |||||
* | ? | NC_000913 | = 1816343 | NA (NA) | 9 (0.070) | 5/172 | NT | NA | noncoding (159/189 nt) | RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
? | NC_000913 | = 1816373 | NA (NA) | noncoding (189/189 nt) | RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
* | ? | NC_000913 | = 2066832 | 0 (0.000) | 21 (0.180) | 11/160 | NT | 100% | noncoding (522/1195 nt) | IS5 | repeat region |
? | NC_000913 | = 2066857 | NA (NA) | noncoding (497/1195 nt) | IS5 | repeat region | |||||
* | ? | NC_000913 | = 2204457 | 83 (0.650) | 16 (0.140) | 10/156 | NT | 15.4% | intergenic (+168/‑139) | yehK/yehL | uncharacterized protein/putative hexameric AAA+ MoxR family ATPase |
? | NC_000913 | = 2204480 | 103 (0.920) | intergenic (+191/‑116) | yehK/yehL | uncharacterized protein/putative hexameric AAA+ MoxR family ATPase | |||||
* | ? | NC_000913 | 2252796 = | NA (NA) | 7 (0.060) | 6/164 | NT | NA | noncoding (1/91 nt) | RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
? | NC_000913 | 2252829 = | NA (NA) | noncoding (34/91 nt) | RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
* | ? | NC_000913 | 2304654 = | NA (NA) | 11 (0.090) | 7/164 | NT | 100% | noncoding (238/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
? | NC_000913 | 2304670 = | 0 (0.000) | noncoding (254/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
* | ? | NC_000913 | 2393131 = | NA (NA) | 15 (0.130) | 13/164 | NT | NA | noncoding (1/36 nt) | REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences |
? | NC_000913 | 2393163 = | NA (NA) | noncoding (33/36 nt) | REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
* | ? | NC_000913 | 2409477 = | NA (NA) | 10 (0.090) | 9/162 | NT | NA | intergenic (+16/+43) | yfbR/yfbS | 5'‑nucleotidase/putative transporter |
? | NC_000913 | 2409508 = | NA (NA) | noncoding (13/19 nt) | REP168 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP168 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
* | ? | NC_000913 | = 2593024 | NA (NA) | 12 (0.100) | 8/164 | NT | NA | noncoding (47/83 nt) | REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences |
? | NC_000913 | = 2593056 | NA (NA) | noncoding (79/83 nt) | REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
* | ? | NC_000913 | = 2655066 | NA (NA) | 17 (0.140) | 7/164 | NT | NA | noncoding (97/97 nt) | RIP183 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP183 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
? | NC_000913 | = 2835118 | NA (NA) | noncoding (52/82 nt) | REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
* | ? | NC_000913 | 2726200 = | NA (NA) | 60 (0.500) | 14/166 | NT | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
* | ? | NC_000913 | 2728214 = | NA (NA) | 43 (0.350) | 9/170 | NT | NA | noncoding (971/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
? | NC_000913 | 2728240 = | NA (NA) | noncoding (945/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
* | ? | NC_000913 | 2729453 = | NA (NA) | 14 (0.120) | 10/158 | NT | 72.5% | intergenic (‑9/+163) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
? | NC_000913 | 2729475 = | 6 (0.050) | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon | |||||
* | ? | NC_000913 | 2729630 = | NA (NA) | 45 (0.370) | 10/168 | NT | NA | noncoding (1528/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
? | NC_000913 | 2729652 = | NA (NA) | noncoding (1506/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
* | ? | NC_000913 | 2835099 = | NA (NA) | 12 (0.100) | 5/164 | NT | NA | noncoding (33/82 nt) | REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences |
? | NC_000913 | 3650712 = | NA (NA) | noncoding (1/100 nt) | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
* | ? | NC_000913 | 2837465 = | NA (NA) | 15 (0.130) | 6/162 | NT | NA | noncoding (1/27 nt) | REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences |
? | NC_000913 | 2837492 = | NA (NA) | intergenic (‑67/+86) | hypF/hydN | carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein/formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit | |||||
* | ? | NC_000913 | 2888334 = | NA (NA) | 8 (0.070) | 5/164 | NT | NA | noncoding (1/37 nt) | REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences |
? | NC_000913 | 2888367 = | NA (NA) | noncoding (34/37 nt) | REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
* | ? | NC_000913 | 2950598 = | NA (NA) | 11 (0.100) | 5/158 | NT | NA | intergenic (+25/+37) | argA/recD | amino acid N‑acetyltransferase and inactive acetylglutamate kinase/exonuclease V (RecBCD complex), alpha chain |
? | NC_000913 | 2950615 = | NA (NA) | noncoding (3/14 nt) | REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
* | ? | NC_000913 | 3139625 = | NA (NA) | 10 (0.080) | 6/164 | NT | NA | noncoding (5/83 nt) | REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences |
? | NC_000913 | 3139655 = | NA (NA) | noncoding (35/83 nt) | REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
* | ? | NC_000913 | 3203112 = | NA (NA) | 10 (0.080) | 5/164 | NT | NA | coding (1222/1239 nt) | cca | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
? | NC_000913 | 3203140 = | NA (NA) | intergenic (+11/+170) | cca/bacA | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase/undecaprenyl pyrophosphate phosphatase | |||||
* | ? | NC_000913 | 3234638 = | NA (NA) | 7 (0.060) | 6/164 | NT | NA | noncoding (1/86 nt) | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences |
? | NC_000913 | 3234671 = | NA (NA) | noncoding (34/86 nt) | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
* | ? | NC_000913 | 3277819 = | NA (NA) | 12 (0.100) | 9/162 | NT | NA | noncoding (1/29 nt) | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences |
? | NC_000913 | 3277844 = | NA (NA) | noncoding (26/29 nt) | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
* | ? | NC_000913 | = 3313290 | NA (NA) | 7 (0.060) | 5/164 | NT | NA | noncoding (39/77 nt) | REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences |
? | NC_000913 | = 3313328 | NA (NA) | noncoding (77/77 nt) | REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
* | ? | NC_000913 | = 3423822 | 0 (0.000) | 33 (0.280) | 9/166 | NT | 100% | intergenic (‑35/+58) | rrfD/rrlD | 5S ribosomal RNA of rrnD operon/23S ribosomal RNA of rrnD operon |
? | NC_000913 | 4040506 = | NA (NA) | intergenic (+83/‑11) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon | |||||
* | ? | NC_000913 | 3620569 = | NA (NA) | 22 (0.180) | 8/166 | NT | 100% | coding (1378/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
? | NC_000913 | 3620582 = | 0 (0.000) | coding (1391/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
* | ? | NC_000913 | = 3622174 | NA (NA) | 6 (0.050) | 4/168 | NT | 86.4% | coding (2983/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
? | NC_000913 | = 3622205 | 1 (0.010) | coding (3014/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
* | ? | NC_000913 | 3622466 = | NA (NA) | 29 (0.240) | 9/170 | NT | 50.3% | coding (3275/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
? | NC_000913 | 3622497 = | 30 (0.230) | coding (3306/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
* | ? | NC_000913 | 3898629 = | NA (NA) | 12 (0.100) | 8/162 | NT | NA | intergenic (+20/+42) | cbrC/yieK | UPF0167 family protein/putative 6‑phosphogluconolactonase |
? | NC_000913 | 3898659 = | NA (NA) | intergenic (+50/+12) | cbrC/yieK | UPF0167 family protein/putative 6‑phosphogluconolactonase | |||||
* | ? | NC_000913 | = 4000222 | NA (NA) | 11 (0.090) | 8/164 | NT | NA | noncoding (73/103 nt) | RIP288 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP288 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
? | NC_000913 | = 4000252 | NA (NA) | noncoding (103/103 nt) | RIP288 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP288 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
* | ? | NC_000913 | = 4035360 | NA (NA) | 32 (0.270) | 10/166 | NT | 100% | intergenic (+207/‑171) | hemG/rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon |
? | NC_000913 | = 4035384 | 0 (0.000) | intergenic (+231/‑147) | hemG/rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon | |||||
* | ? | NC_000913 | 4240157 = | NA (NA) | 12 (0.100) | 7/164 | NT | NA | noncoding (1/37 nt) | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences |
? | NC_000913 | 4240190 = | NA (NA) | noncoding (34/37 nt) | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
* | ? | NC_000913 | = 4295947 | NA (NA) | 19 (0.160) | 8/164 | NT | 15.2% | noncoding (113/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites |
? | NC_000913 | = 4295980 | 115 (0.900) | noncoding (146/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
* | ? | NC_000913 | 4323250 = | NA (NA) | 11 (0.090) | 9/164 | NT | NA | noncoding (5/87 nt) | REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences |
? | NC_000913 | 4323280 = | NA (NA) | noncoding (35/87 nt) | REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
* | ? | NC_000913 | 4325806 = | NA (NA) | 33 (0.280) | 8/164 | NT | 16.7% | noncoding (5/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
? | NC_000913 | 4326138 = | 138 (1.390) | noncoding (337/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
* | ? | NC_000913 | = 4326350 | NA (NA) | 8 (0.070) | 5/164 | NT | NA | noncoding (549/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
? | NC_000913 | = 4326380 | NA (NA) | noncoding (579/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
* | ? | NC_000913 | 4569947 = | NA (NA) | 10 (0.080) | 6/166 | NT | NA | noncoding (2/99 nt) | RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
? | NC_000913 | 4569970 = | NA (NA) | noncoding (25/99 nt) | RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
* | ? | NC_000913 | = 4587878 | NA (NA) | 10 (0.090) | 8/162 | NT | NA | noncoding (7/27 nt) | REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences |
? | NC_000913 | = 4587891 | NA (NA) | noncoding (20/27 nt) | REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences |