mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 2,679,431 | 0 | G | T | 72.6% | 62.7 / 25.2 | 62 | R657R (CGC→CGA) | yphG | conserved hypothetical protein |
| * | W3110S.gb | 1,910,458 | 0 | A | G | 62.1% | 97.1 / 89.8 | 206 | V8A (GTT→GCT) | yobG | hypothetical protein |
| * | W3110S.gb | 2,448,169 | 0 | G | A | 61.9% | 11.5 / 14.2 | 42 | E320E (GAG→GAA) | trmC | fused 5‑methylaminomethyl‑2‑thiouridine forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
| * | W3110S.gb | 2,259,357 | 0 | T | G | 55.3% | 8.0 / 35.4 | 47 | intergenic (+9/+62) | yeiL/yeiM | DNA‑binding transcriptional activator/predicted nucleoside transporter |
| * | W3110S.gb | 2,259,358 | 0 | T | G | 55.3% | 5.8 / 36.9 | 47 | intergenic (+10/+61) | yeiL/yeiM | DNA‑binding transcriptional activator/predicted nucleoside transporter |
| * | W3110S.gb | 2,259,365 | 0 | C | T | 55.3% | 3.8 / 22.0 | 47 | intergenic (+17/+54) | yeiL/yeiM | DNA‑binding transcriptional activator/predicted nucleoside transporter |
| * | W3110S.gb | 3,648,817 | 0 | C | A | 55.3% | 14.4 / 73.0 | 85 | L7I (CTC→ATC) | hemY | predicted protoheme IX synthesis protein |
| * | W3110S.gb | 4,612,477 | 0 | G | T | 53.0% | 11.8 / 87.9 | 100 | intergenic (‑95/‑8) | rsmC/holD | 16S RNA m2G1207 methylase/DNA polymerase III, psi subunit |
| * | W3110S.gb | 739,688 | 0 | C | G | 51.0% | ‑5.3 / 49.5 | 49 | P89R (CCG→CGG) | ybgA | conserved hypothetical protein |
| * | W3110S.gb | 739,704 | 0 | T | C | 51.0% | ‑1.8 / 25.8 | 49 | N94N (AAT→AAC) | ybgA | conserved hypothetical protein |
| * | W3110S.gb | 739,718 | 0 | T | C | 51.0% | ‑0.9 / 25.0 | 49 | V99A (GTT→GCT) | ybgA | conserved hypothetical protein |
| * | W3110S.gb | 739,692 | 0 | C | T | 50.0% | ‑5.9 / 27.5 | 49 | R90R (CGC→CGT) | ybgA | conserved hypothetical protein |
| * | W3110S.gb | 739,698 | 0 | C | T | 50.0% | ‑6.0 / 27.1 | 49 | H92H (CAC→CAT) | ybgA | conserved hypothetical protein |
| * | W3110S.gb | 739,701 | 0 | C | T | 50.0% | ‑6.5 / 27.5 | 49 | T93T (ACC→ACT) | ybgA | conserved hypothetical protein |
| * | W3110S.gb | 3,851,694 | 0 | C | A | 48.8% | 5.0 / 110.8 | 121 | G208V (GGG→GTG) ‡ | yibQ | predicted polysaccharide deacetylase |
| * | W3110S.gb | 2,263,203 | 0 | C | T | 44.1% | 1.7 / 14.4 | 34 | P514P (CCG→CCA) | fruA | fused fructose‑specific PTS enzyme IIB'BC components |
| * | W3110S.gb | 1,975,632 | 0 | G | T | 40.0% | 21.2 / 32.0 | 50 | S469S (TCC→TCA) | cheA | fused chemotactic sensory histidine kinase (soluble) in two‑component regulatory system with CheB and CheY |
| * | W3110S.gb | 110,427 | 0 | G | T | 28.7% | 130.3 / 47.9 | 115 | D717Y (GAT→TAT) | secA | preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core translocon |
| * | W3110S.gb | 3,851,689 | 0 | G | T | 25.6% | 153.4 / 46.7 | 121 | P210T (CCT→ACT) | yibQ | predicted polysaccharide deacetylase |