mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,763,556 | 0 | T | C | 48.5% | 3.1 / 104.0 | 68 | noncoding (288/1542 nt) | rrsG | 16S ribosomal RNA |
| * | minE | 705,870 | 0 | A | G | 42.1% | 7.9 / 20.5 | 19 | intergenic (‑367/+128) | ymcC/serX | predicted outer membrane lipoprotein/tRNA‑Ser |
| * | minE | 2,359,867 | 0 | G | A | 35.9% | 99.5 / 79.1 | 78 | noncoding (1228/2905 nt) | rrlA | 23S ribosomal RNA |
| * | minE | 2,359,876 | 0 | C | T | 32.6% | 132.9 / 80.8 | 89 | noncoding (1219/2905 nt) | rrlA | 23S ribosomal RNA |
| Marginal new junction evidence (lowest skew 10 of 48 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 204740 | NA (NA) | 8 (0.200) | 5/104 | 3.1 | NA | noncoding (157/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | minE | = 204751 | NA (NA) | noncoding (168/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | minE | 233369 = | 51 (1.090) | 6 (0.140) | 5/110 | 3.2 | 10.9% | coding (745/810 nt) | proC | pyrroline‑5‑carboxylate reductase, NAD(P)‑binding |
| ? | minE | 233386 = | 51 (1.190) | coding (728/810 nt) | proC | pyrroline‑5‑carboxylate reductase, NAD(P)‑binding | |||||
| * | ? | minE | = 356642 | 61 (1.300) | 8 (0.180) | 5/116 | 3.4 | 12.1% | coding (175/867 nt) | folD | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase and 5,10‑methylene‑tetrahydrofolate cyclohydrolase |
| ? | minE | = 356663 | 57 (1.260) | coding (154/867 nt) | folD | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase and 5,10‑methylene‑tetrahydrofolate cyclohydrolase | |||||
| * | ? | minE | 2546994 = | 64 (1.360) | 5 (0.120) | 4/110 | 3.6 | 8.5% | coding (495/933 nt) | rfaD | ADP‑L‑glycero‑D‑mannoheptose‑6‑epimerase, NAD(P)‑binding |
| ? | minE | 2547021 = | 49 (1.140) | coding (468/933 nt) | rfaD | ADP‑L‑glycero‑D‑mannoheptose‑6‑epimerase, NAD(P)‑binding | |||||
| * | ? | minE | = 203951 | NA (NA) | 6 (0.140) | 4/110 | 3.6 | NA | noncoding (1356/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | minE | = 203960 | NA (NA) | noncoding (1365/1542 nt) | rrsH | 16S ribosomal RNA | |||||
| * | ? | minE | = 1563009 | 63 (1.340) | 5 (0.110) | 4/116 | 3.7 | 7.6% | coding (3016/3594 nt) | evgS | hybrid sensory histidine kinase in two‑component regulatory system with EvgA |
| ? | minE | = 1563028 | 61 (1.340) | coding (3035/3594 nt) | evgS | hybrid sensory histidine kinase in two‑component regulatory system with EvgA | |||||
| * | ? | minE | = 2685290 | 106 (2.260) | 5 (0.120) | 3/104 | 3.8 | 5.8% | coding (63/1353 nt) | envZ | sensory histidine kinase in two‑component regulatory system with OmpR |
| ? | minE | = 2685307 | 70 (1.720) | coding (80/1353 nt) | envZ | sensory histidine kinase in two‑component regulatory system with OmpR | |||||
| * | ? | minE | 1134998 = | 41 (0.870) | 3 (0.080) | 3/102 | 3.8 | 7.6% | intergenic (+8/‑93) | pfkB/ydiZ | 6‑phosphofructokinase II/hypothetical protein |
| ? | minE | 1135020 = | 38 (0.950) | intergenic (+30/‑71) | pfkB/ydiZ | 6‑phosphofructokinase II/hypothetical protein | |||||
| * | ? | minE | = 574863 | 46 (0.980) | 4 (0.100) | 3/102 | 3.8 | 9.3% | coding (957/993 nt) | ybjX | conserved hypothetical protein |
| ? | minE | = 574890 | 39 (0.980) | coding (930/993 nt) | ybjX | conserved hypothetical protein | |||||
| * | ? | minE | = 2970482 | 34 (0.720) | 3 (0.070) | 3/108 | 3.9 | 10.1% | coding (598/645 nt) | ytjB | conserved hypothetical protein |
| ? | minE | = 2970505 | 23 (0.550) | coding (575/645 nt) | ytjB | conserved hypothetical protein | |||||