mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 61,929 | G→A | F510F (TTC→TTT) | polB ← | DNA polymerase II |
| RA | 86,263 | C→T | S253S (AGC→AGT) | murC → | UDP‑N‑acetylmuramate:L‑alanine ligase |
| RA | 204,511 | C→T | intergenic (+111/‑73) | alaV → / → rrlH | tRNA‑Ala/23S ribosomal RNA |
| RA | 204,556 | A→G | intergenic (+156/‑28) | alaV → / → rrlH | tRNA‑Ala/23S ribosomal RNA |
| RA | 340,151 | T→A | A14A (GCT→GCA) | ybaS → | predicted glutaminase |
| RA | 498,954 | C→T | Q430Q (CAG→CAA) | modF ← | fused subunits of molybdate transporter and ATP‑binding components of ABC superfamily |
| RA | 694,703 | G→A | G89S (GGC→AGC) | appC → | cytochrome bd‑II oxidase, subunit I |
| RA | 817,564 | C→T | L113L (CTC→CTT) | prfA → | peptide chain release factor RF‑1 |
| RA | 894,732 | C→T | D445N (GAC→AAC) | sapA ← | predicted antimicrobial peptide transporter subunit |
| RA | 942,255 | C→T | R296K (AGG→AAG) | ddpF ← | D‑Ala‑D‑Ala transporter subunit |
| RA | 1,017,691 | A→G | E50G (GAA→GGA) | ydgA → | conserved hypothetical protein |
| RA | 1,036,505 | G→A | A632A (GCG→GCA) | rsxC → | fused predicted 4Fe‑4S ferredoxin‑type protein |
| RA | 1,291,205 | C→T | intergenic (+320/+133) | yeeN → / ← asnW | conserved hypothetical protein/tRNA‑Asn |
| RA | 1,560,516 | C→T | P175S (CCA→TCA) | evgS → | hybrid sensory histidine kinase in two‑component regulatory system with EvgA |
| RA | 1,892,019 | +GC | intergenic (‑437/+54) | gudP ← / ← ygdL | predicted D‑glucarate transporter/conserved hypothetical protein |
| RA | 2,019,887 | C→T | Q169* (CAA→TAA) | dkgA → | 2,5‑diketo‑D‑gluconate reductase A |
| RA | 2,078,255 | C→T | D88N (GAT→AAT) | uxaA ← | altronate hydrolase |
| RA | 2,281,038 | G→A | Q95* (CAG→TAG) | fabR ← | DNA‑binding transcriptional repressor |
| RA | 2,464,298 | G→A | Q115Q (CAG→CAA) | atpI → | ATP synthase, membrane‑bound accesory subunit |
| RA | 2,489,124 | G→A | T41T (ACG→ACA) | dnaN → | DNA polymerase III, beta subunit |
| RA | 2,520,434 | G→A | W44* (TGG→TAG) | ligB → | DNA ligase, NAD(+)‑dependent |
| RA | 2,881,808 | C→T | V87I (GTT→ATT) | ytfG ← | NAD(P)H:quinone oxidoreductase |
| RA | 2,891,553 | A→G | K70E (AAA→GAA) | ytfQ → | predicted sugar transporter subunit |
| RA | 2,910,326 | (A)6→7 | coding (1318/2697 nt) | mgtA → | magnesium transporter |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 206882 = | NA (NA) | 14 (0.330) | 6/110 | 2.9 | NA | noncoding (2299/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | minE | 206901 = | NA (NA) | noncoding (2318/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | minE | 1611749 = | 7 (0.150) | 13 (0.310) +ATGCGGT |
7/106 | 2.5 | 30.3% | coding (1404/1404 nt) | eutA | reactivating factor for ethanolamine ammonia lyase |
| ? | minE | = 2603083 | 61 (1.300) | coding (684/753 nt) | yhiQ | predicted SAM‑dependent methyltransferase | |||||