mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,080,904 | G→T | intergenic (+91/‑452) | putP → / → efeU | proline:Na(+) symporter/inactive ferrous iron permease EfeU, N‑terminal fragment |
| RA | 1,147,841 | G→T | R74L (CGG→CTG) | plsX → | putative phosphate acyltransferase |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| RA | 1,598,477 | T→C | intergenic (‑391/+140) | yneO ← / ← lsrK | AIDA‑I family autotransporter YneO/autoinducer‑2 kinase |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| JC JC | 1,776,454 | IS5 (–) +4 bp | coding (868‑871/1596 nt) | ydiF → | putative acetate‑CoA transferase |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,886,437 | G→C | G198A (GGC→GCC) | yeaX → | carnitine monooxygenase subunit YeaX |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,512,937 | G→T | intergenic (‑231/‑105) | mntH ← / → nupC | Mn(2(+))/Fe(2(+)): H(+) symporter MntH/nucleoside:H(+) symporter NupC |
| RA | 2,520,933 | (G)5→6 | noncoding (3/76 nt) | valU → | tRNA‑Val |
| RA | 2,757,829 | C→A | E258* (GAA→TAA) | yfjH ← | CP4‑57 prophage; protein YfjH |
| RA | 2,863,111 | C→A | C259* (TGC→TGA) | ygbK → | putative 3‑oxo‑tetronate kinase YgbK |
| RA | 2,943,436 | G→T | A34S (GCC→TCC) | csdA → | cysteine sulfinate desulfinase |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,593,037 | C→A | R134L (CGG→CTG) | livF ← | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,818,781 | C→A | intergenic (+197/‑93) | dinD → / → yicG | DNA damage‑inducible protein D/conserved inner membrane protein YicG |
| RA | 4,121,883 | G→T | R135R (CGC→CGA) | hslV ← | peptidase component of the HslVU protease |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,389,630 | C→A | G244V (GGC→GTC) | psd ← | phosphatidylserine decarboxylase proenzyme |
| RA | 4,457,851 | G→T | P5P (CCC→CCA) | yjgA ← | DUF615 domain‑containing protein YjgA |
| RA | 4,527,292 | G→T | P82P (CCC→CCA) | sgcE ← | KpLE2 phage‑like element; putative epimerase SgcE |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3102970 | 3104047 | 1078 | 14 [11] | [9] 13 | [mutY] | [mutY] |
| * | * | ÷ | NC_000913 | 3423722–3424232 | 3424525–3424238 | 7–804 | 13 [12] | [10] 14 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 16 (0.280) | 88 (1.760) | 53/246 | 0.0 | 87.9% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 10 (0.200) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 16 (0.280) | 33 (0.660) | 25/246 | 0.7 | 73.2% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 10 (0.200) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 3363001 = | 84 (1.480) | 89 (1.580) | 49/276 | 0.1 | 67.3% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 3 (0.050) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 59 (1.040) | 42/278 | 0.2 | 95.2% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 3 (0.050) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||