Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F999 I0 R1
|
79 |
90.6 |
6749123 |
97.8% |
6600642 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,093,223 |
A→G |
V72V (GTT→GTC) |
rhaM ← |
L‑rhamnose mutarotase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,093,223 | 0 | A | G | 100.0%
| 386.2
/ NA
| 95 | V72V (GTT→GTC) | rhaM | L‑rhamnose mutarotase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (50/45); total (50/45) |
GGGTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAAACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAATCT > NC_000913/4093176‑4093269
|
gggTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGAc < 1:4086175/50‑1 (MQ=255)
gggTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGAc < 1:6266651/50‑1 (MQ=255)
gTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACAt > 1:2875682/1‑50 (MQ=255)
gTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACAt > 1:11298/1‑50 (MQ=255)
gTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACAt < 1:3319717/50‑1 (MQ=255)
gTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACAt < 1:6166828/50‑1 (MQ=255)
ttAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACAt > 1:4436940/1‑49 (MQ=255)
ttAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACAt > 1:4589239/1‑49 (MQ=255)
ttAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATc < 1:2283977/50‑1 (MQ=255)
aGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAg > 1:899548/1‑50 (MQ=255)
aGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAg > 1:1799553/1‑50 (MQ=255)
gCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGt > 1:2895800/1‑50 (MQ=255)
cGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTg > 1:3823150/1‑50 (MQ=255)
cGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTg < 1:6444811/50‑1 (MQ=255)
cGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTg > 1:6349179/1‑50 (MQ=255)
gggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGc > 1:110365/1‑50 (MQ=255)
ggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCt < 1:2492117/50‑1 (MQ=255)
ggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCt < 1:4446631/50‑1 (MQ=255)
ggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCt < 1:6479547/50‑1 (MQ=255)
ggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCt < 1:3960516/50‑1 (MQ=255)
gCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTg < 1:6254832/50‑1 (MQ=255)
gCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTg < 1:6558343/50‑1 (MQ=255)
gCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTg > 1:1331162/1‑50 (MQ=255)
gCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTg < 1:3909394/50‑1 (MQ=255)
cATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTgg > 1:2732528/1‑50 (MQ=255)
cATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTgg < 1:5804879/50‑1 (MQ=255)
cATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTgg < 1:21142/50‑1 (MQ=255)
aTAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTgg > 1:1813194/1‑49 (MQ=255)
aTAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTgg > 1:1991430/1‑49 (MQ=255)
aTAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGc < 1:6536269/50‑1 (MQ=255)
aTAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGc < 1:5056904/50‑1 (MQ=255)
tAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGc > 1:3423370/1‑49 (MQ=255)
aaCATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCaa > 1:707099/1‑50 (MQ=255)
aaCATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCaa > 1:747314/1‑50 (MQ=255)
aaCATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCaa > 1:1146697/1‑50 (MQ=255)
aCATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAAc < 1:2118388/50‑1 (MQ=255)
aCATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAAc < 1:2405154/50‑1 (MQ=255)
aCATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAAc < 1:1549418/50‑1 (MQ=255)
cATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAAcc > 1:5337476/1‑50 (MQ=255)
cATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAAcc < 1:4802326/50‑1 (MQ=255)
aTCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCg > 1:4447081/1‑50 (MQ=255)
tCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCg > 1:1036362/1‑49 (MQ=255)
cGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCa > 1:1858227/1‑50 (MQ=255)
cGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCa > 1:4333731/1‑50 (MQ=255)
cGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCa > 1:6114632/1‑50 (MQ=255)
ggTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAt > 1:2874861/1‑50 (MQ=255)
ggTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAt < 1:2345289/50‑1 (MQ=255)
ggTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAt < 1:691311/50‑1 (MQ=255)
ggTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAt < 1:1069482/50‑1 (MQ=255)
gTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAtt > 1:5788170/1‑50 (MQ=255)
tCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTc < 1:5973066/50‑1 (MQ=255)
tCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTc > 1:6388634/1‑50 (MQ=255)
tCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTc > 1:5481052/1‑50 (MQ=255)
tCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTc > 1:4537035/1‑50 (MQ=255)
atatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCTACCGCATTCCa < 1:6617407/50‑1 (MQ=255)
atatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTc > 1:4256093/1‑48 (MQ=255)
atatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTc > 1:6642959/1‑48 (MQ=255)
atatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCa < 1:1795099/50‑1 (MQ=255)
tatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAg < 1:5477027/50‑1 (MQ=255)
tatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAg < 1:938253/50‑1 (MQ=255)
tatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAg < 1:107465/50‑1 (MQ=255)
tatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAGCCGCATTCCAGc < 1:4844949/49‑1 (MQ=255)
tatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGc < 1:3980406/49‑1 (MQ=255)
tatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCg > 1:4975664/1‑50 (MQ=255)
tatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCg > 1:4696118/1‑50 (MQ=255)
tatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCg < 1:2221554/50‑1 (MQ=255)
tatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCg > 1:2432385/1‑50 (MQ=255)
tttCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGtt > 1:6001217/1‑50 (MQ=255)
ttCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttc > 1:2235651/1‑50 (MQ=255)
tCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttct > 1:114769/1‑50 (MQ=255)
tCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttct > 1:4096003/1‑50 (MQ=255)
tCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttct > 1:3640797/1‑50 (MQ=255)
tCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttc < 1:4889443/49‑1 (MQ=255)
ccaccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttct < 1:4416550/49‑1 (MQ=255)
caccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttcttc < 1:80117/50‑1 (MQ=255)
accaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCa < 1:74012/50‑1 (MQ=255)
caACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt > 1:6587019/1‑46 (MQ=255)
aaCGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAt < 1:6387414/50‑1 (MQ=255)
aCGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAtt > 1:2899315/1‑50 (MQ=255)
cGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAtt > 1:1714862/1‑49 (MQ=255)
cGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc < 1:3348937/50‑1 (MQ=255)
cGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc < 1:2222623/50‑1 (MQ=255)
gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc > 1:4694004/1‑49 (MQ=255)
gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc > 1:3762184/1‑49 (MQ=255)
gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc > 1:5733653/1‑49 (MQ=255)
gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc > 1:6259217/1‑49 (MQ=255)
ttGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCaa < 1:4408210/50‑1 (MQ=255)
ttGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCaa > 1:1855426/1‑50 (MQ=255)
tGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAt > 1:1852460/1‑50 (MQ=255)
ggCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAtc > 1:5858492/1‑50 (MQ=255)
ggCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAt < 1:2665087/49‑1 (MQ=255)
ggCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAt < 1:3546311/49‑1 (MQ=255)
ggCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAt < 1:3944628/49‑1 (MQ=255)
gCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAtct > 1:1637343/1‑50 (MQ=255)
gCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAtc < 1:3019840/49‑1 (MQ=255)
|
GGGTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAAACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAATCT > NC_000913/4093176‑4093269
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
