Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F999 I0 R1
|
73 |
75.1 |
5586924 |
96.8% |
5408142 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,093,223 |
A→G |
V72V (GTT→GTC) |
rhaM ← |
L‑rhamnose mutarotase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,093,223 | 0 | A | G | 100.0%
| 222.1
/ NA
| 55 | V72V (GTT→GTC) | rhaM | L‑rhamnose mutarotase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (24/31); total (24/31) |
GGTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAAACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAATCT > NC_000913/4093177‑4093269
|
ggTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACa > 1:4105438/1‑50 (MQ=255)
gTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACAt > 1:1779810/1‑50 (MQ=255)
gTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACAt > 1:1711827/1‑50 (MQ=255)
ttAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATc < 1:279919/50‑1 (MQ=255)
ttAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATc < 1:1875989/50‑1 (MQ=255)
gCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAg < 1:3653933/49‑1 (MQ=255)
gCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGt < 1:789585/50‑1 (MQ=255)
gCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGt < 1:795316/50‑1 (MQ=255)
gggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGc > 1:5362105/1‑50 (MQ=255)
gggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGc > 1:3328677/1‑50 (MQ=255)
ggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCt < 1:2251050/50‑1 (MQ=255)
gCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTg > 1:3557939/1‑50 (MQ=255)
cATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTgg > 1:1778458/1‑50 (MQ=255)
tAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCa < 1:3934606/50‑1 (MQ=255)
aaCATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCaa > 1:4222442/1‑50 (MQ=255)
aCATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAAc < 1:4293928/50‑1 (MQ=255)
aCATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAAc < 1:126400/50‑1 (MQ=255)
cATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAAcc > 1:1019970/1‑50 (MQ=255)
cATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAAcc < 1:1558662/50‑1 (MQ=255)
aTCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCTACCg < 1:4356728/50‑1 (MQ=255)
ggTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAt > 1:5369786/1‑50 (MQ=255)
gTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAtt > 1:5136539/1‑50 (MQ=255)
tCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTc < 1:2573289/50‑1 (MQ=255)
tCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTc < 1:5549495/50‑1 (MQ=255)
tCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTc < 1:1516288/50‑1 (MQ=255)
tCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTc > 1:3811440/1‑50 (MQ=255)
cATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTc > 1:5339701/1‑49 (MQ=255)
atatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTcc < 1:2570145/49‑1 (MQ=255)
atatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCa < 1:419040/50‑1 (MQ=255)
tatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAg > 1:2040820/1‑50 (MQ=255)
tatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGc < 1:3471042/49‑1 (MQ=255)
tatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGc < 1:2306228/49‑1 (MQ=255)
tatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGc < 1:4502804/49‑1 (MQ=255)
atTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGt > 1:2686249/1‑50 (MQ=255)
tttCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGtt < 1:1133033/50‑1 (MQ=255)
ttCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttc > 1:3672301/1‑50 (MQ=255)
ccaccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt > 1:2619765/1‑50 (MQ=255)
ccaccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttct < 1:1779664/49‑1 (MQ=255)
caccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttcttc < 1:5409667/50‑1 (MQ=255)
accaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt > 1:4627060/1‑48 (MQ=255)
accaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt > 1:4784218/1‑48 (MQ=255)
accaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCa < 1:101356/50‑1 (MQ=255)
caACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGa < 1:3271645/50‑1 (MQ=255)
caACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGa < 1:5434939/50‑1 (MQ=255)
aaCGTTGGCAGACATCAGTGCTGGCTACCGCATTCCAGCGTTCTTCAGAt < 1:4041064/50‑1 (MQ=255)
aaCGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAt < 1:1580119/50‑1 (MQ=255)
aCGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAtt < 1:4331171/50‑1 (MQ=255)
aCGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAtt > 1:1176375/1‑50 (MQ=255)
cGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAtt > 1:3963759/1‑49 (MQ=255)
cGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc < 1:987638/50‑1 (MQ=255)
gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc > 1:67683/1‑49 (MQ=255)
gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc > 1:9281/1‑49 (MQ=255)
tGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAt > 1:2394849/1‑50 (MQ=255)
ggCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAt < 1:1303690/49‑1 (MQ=255)
gCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAtct < 1:496977/50‑1 (MQ=255)
|
GGTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAAACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAATCT > NC_000913/4093177‑4093269
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
