Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A20 F999 I0 R1
|
98 |
154.1 |
11406411 |
97.3% |
11098437 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,093,223 |
A→G |
V72V (GTT→GTC) |
rhaM ← |
L‑rhamnose mutarotase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,093,223 | 0 | A | G | 100.0%
| 579.9
/ NA
| 144 | V72V (GTT→GTC) | rhaM | L‑rhamnose mutarotase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (82/62); total (82/62) |
Only 100 of 144 total aligned reads displayed.
GGGTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAAACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAATCT > NC_000913/4093176‑4093269
|
gggTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGAc < 1:4349017/50‑1 (MQ=255)
gggTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGAc < 2:3387805/50‑1 (MQ=255)
gggTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGAc < 1:2796924/50‑1 (MQ=255)
ggTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACa < 1:5562072/50‑1 (MQ=255)
gTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACAt > 2:1097347/1‑50 (MQ=255)
gTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACAt > 2:3622696/1‑50 (MQ=255)
ttAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATc < 2:4145600/50‑1 (MQ=255)
tAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACAt > 2:134037/1‑48 (MQ=255)
aGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCa < 2:1090714/49‑1 (MQ=255)
aGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAg > 2:5463909/1‑50 (MQ=255)
gCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAg < 1:2185956/49‑1 (MQ=255)
gCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAg < 1:2582173/49‑1 (MQ=255)
gCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGt < 2:246832/50‑1 (MQ=255)
cGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTg < 2:5417266/50‑1 (MQ=255)
gggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGc > 1:1462845/1‑50 (MQ=255)
gggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGc > 2:726430/1‑50 (MQ=255)
gggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGc > 2:2054381/1‑50 (MQ=255)
ggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCt > 2:1516585/1‑50 (MQ=255)
ggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCt > 2:1743892/1‑50 (MQ=255)
gCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTg > 1:86403/1‑50 (MQ=255)
gCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTg > 1:3255280/1‑50 (MQ=255)
gCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTg < 1:1827402/50‑1 (MQ=255)
gCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTg < 1:145482/50‑1 (MQ=255)
gCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTg > 2:712818/1‑50 (MQ=255)
gCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTg < 2:1275952/50‑1 (MQ=255)
cATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTgg < 2:3367372/50‑1 (MQ=255)
cATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTgg > 1:2876407/1‑50 (MQ=255)
cATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTgg > 2:3175985/1‑50 (MQ=255)
aTAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTgg > 1:3978220/1‑49 (MQ=255)
aTAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTgg > 1:4087214/1‑49 (MQ=255)
aTAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGc < 1:580492/50‑1 (MQ=255)
tAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGc > 1:2831870/1‑49 (MQ=255)
tAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGc > 1:2306287/1‑49 (MQ=255)
aaCATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCaa > 2:4934693/1‑50 (MQ=255)
aaCATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCaa > 2:4531874/1‑50 (MQ=255)
aaCATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCaa > 2:2852768/1‑50 (MQ=255)
aCATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCaa < 1:4686994/49‑1 (MQ=255)
aCATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAAc < 2:209974/50‑1 (MQ=255)
aCATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAAc < 1:1048080/50‑1 (MQ=255)
cATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCCAcc < 2:2913991/50‑1 (MQ=255)
cATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAAcc > 1:3193685/1‑50 (MQ=255)
aTCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCg > 2:2884557/1‑50 (MQ=255)
aTCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCg > 1:690522/1‑50 (MQ=255)
aTCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCg < 1:741703/50‑1 (MQ=255)
cGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCa > 1:5531301/1‑50 (MQ=255)
cGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCa > 1:5612875/1‑50 (MQ=255)
ggTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAt > 1:1356024/1‑50 (MQ=255)
ggTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAt < 2:2319410/50‑1 (MQ=255)
ggTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAt < 1:2648686/50‑1 (MQ=255)
ggTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAt > 1:4263390/1‑50 (MQ=255)
ggTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAt < 1:4921216/50‑1 (MQ=255)
gTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAtt > 1:4767114/1‑50 (MQ=255)
gTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAtt > 2:4031006/1‑50 (MQ=255)
gTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAtt < 1:5408018/50‑1 (MQ=255)
tCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTc > 2:470739/1‑50 (MQ=255)
atatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTcc < 2:580249/49‑1 (MQ=255)
atatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTcc < 2:861303/49‑1 (MQ=255)
atatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTcc < 2:282234/49‑1 (MQ=255)
atatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCa < 2:3701860/50‑1 (MQ=255)
tatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAg > 1:4059279/1‑50 (MQ=255)
tatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAg > 2:4318265/1‑50 (MQ=255)
ctatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGc > 2:478128/2‑50 (MQ=255)
atatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGc > 1:1311263/1‑50 (MQ=255)
tatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGc < 2:3090021/49‑1 (MQ=255)
tatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCg < 1:1013928/50‑1 (MQ=255)
tttCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGtt > 1:1918204/1‑50 (MQ=255)
tttCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGtt > 2:2931239/1‑50 (MQ=255)
ttCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttc > 1:4924264/1‑50 (MQ=255)
ttCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttc > 1:3574698/1‑50 (MQ=255)
ttCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttc > 1:3138895/1‑50 (MQ=255)
ttCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttc > 1:1039611/1‑50 (MQ=255)
tCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttct > 2:943074/1‑50 (MQ=255)
tCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttct > 2:1787453/1‑50 (MQ=255)
caccaACGTTGGCAGACATCAGTGCTGGCAGCCGCATTCCAGCGttctt < 2:4488695/49‑1 (MQ=255)
caccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttcttc < 2:3738625/50‑1 (MQ=255)
caccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt < 2:2594554/49‑1 (MQ=255)
caccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt > 1:5249425/1‑49 (MQ=255)
accaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt > 1:4500277/1‑48 (MQ=255)
accaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCa < 1:3558878/50‑1 (MQ=255)
ccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt > 2:2600547/1‑47 (MQ=255)
caACGTTGGCAGACATCAGTGCTGGCGCCCGCATTCCAGCGTTCTTCAGa < 2:4294416/50‑1 (MQ=255)
caACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt > 1:4795070/1‑46 (MQ=255)
aaCGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAt > 1:195768/1‑50 (MQ=255)
aaCGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAt > 1:3821317/1‑50 (MQ=255)
aCGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAtt < 1:421330/50‑1 (MQ=255)
aCGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAtt < 2:4670776/50‑1 (MQ=255)
cGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc < 2:3112028/50‑1 (MQ=255)
cGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc < 2:1475281/50‑1 (MQ=255)
gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc > 1:5486291/1‑49 (MQ=255)
gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCa < 2:2128764/50‑1 (MQ=255)
gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCa < 2:3256502/50‑1 (MQ=255)
ttGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCaa > 2:453992/1‑50 (MQ=255)
ttGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCaa > 1:3689737/1‑50 (MQ=255)
tGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAt > 2:5313325/1‑50 (MQ=255)
tGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAt > 2:5333579/1‑50 (MQ=255)
tGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAt > 1:866041/1‑50 (MQ=255)
ggCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAtc > 2:573409/1‑50 (MQ=255)
ggCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAt < 2:5352583/49‑1 (MQ=255)
gCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAtct < 2:1208042/50‑1 (MQ=255)
gCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAtct < 1:2775948/50‑1 (MQ=255)
|
GGGTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAAACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAATCT > NC_000913/4093176‑4093269
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
