Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A26 F999 I0 R1
|
111 |
30.9 |
2867207 |
97.9% |
2806995 |
48.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,093,223 |
A→G |
V72V (GTT→GTC) |
rhaM ← |
L‑rhamnose mutarotase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,093,223 | 0 | A | G | 100.0%
| 201.8
/ NA
| 52 | V72V (GTT→GTC) | rhaM | L‑rhamnose mutarotase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (23/29); total (23/29) |
GGTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAAACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAATC > NC_000913/4093177‑4093268
|
ggTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGAc < 1:91006/49‑1 (MQ=255)
ttAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACAt < 1:2387550/49‑1 (MQ=255)
aGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATc < 1:1398342/48‑1 (MQ=255)
gCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCa < 1:163973/48‑1 (MQ=255)
gCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCa < 1:2610342/48‑1 (MQ=255)
gCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCa < 1:1471183/48‑1 (MQ=255)
cGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGt < 1:2558724/49‑1 (MQ=255)
cGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGt < 1:766984/49‑1 (MQ=255)
gggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTg < 1:1666507/49‑1 (MQ=255)
ggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGc > 1:633140/1‑49 (MQ=255)
ggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGc < 1:2623544/49‑1 (MQ=255)
gCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCt > 1:2845751/1‑49 (MQ=255)
gCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCt < 1:1876742/49‑1 (MQ=255)
cATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTg < 1:2846127/49‑1 (MQ=255)
cATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTg < 1:2518420/49‑1 (MQ=255)
cATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTg < 1:1183469/49‑1 (MQ=255)
tAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTgg > 1:665463/1‑48 (MQ=255)
tAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGc < 1:1808533/49‑1 (MQ=255)
aaCATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGc > 1:2356238/1‑48 (MQ=255)
aaCATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGc > 1:2132370/1‑48 (MQ=255)
aCATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCa < 1:5578/48‑1 (MQ=255)
tCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCg > 1:1501984/1‑49 (MQ=255)
tCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCg > 1:1333378/1‑49 (MQ=255)
tCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCg > 1:939249/1‑49 (MQ=255)
ggTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCa > 1:2610114/1‑49 (MQ=255)
ggTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCa < 1:969635/49‑1 (MQ=255)
ggTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCa > 1:1746499/1‑49 (MQ=255)
gTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAt < 1:1960256/49‑1 (MQ=255)
gTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAt < 1:876815/49‑1 (MQ=255)
gTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAt > 1:2764310/1‑49 (MQ=255)
atatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTcc < 1:2698602/49‑1 (MQ=255)
atatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTc > 1:2766857/1‑48 (MQ=255)
tatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCa < 1:789653/49‑1 (MQ=255)
atatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAg > 1:1528408/1‑49 (MQ=255)
tatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGc > 1:1593963/1‑49 (MQ=255)
atTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCg > 1:1558422/1‑49 (MQ=255)
tCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttc > 1:1167187/1‑49 (MQ=255)
tCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGtt < 1:10842/48‑1 (MQ=255)
ccaccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttc < 1:1113456/48‑1 (MQ=255)
ccaccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttc < 1:2537366/48‑1 (MQ=255)
caccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt < 1:437467/49‑1 (MQ=255)
accaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttcttc < 1:1480963/49‑1 (MQ=255)
accaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt > 1:1195591/1‑48 (MQ=255)
caACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt > 1:1827425/1‑46 (MQ=255)
caACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt > 1:1441363/1‑46 (MQ=255)
caACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAg < 1:2754636/49‑1 (MQ=255)
cGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAtt > 1:1487088/1‑49 (MQ=255)
cGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAtt < 1:1517631/49‑1 (MQ=255)
gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAtt > 1:1606169/1‑48 (MQ=255)
ttGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc > 1:1395407/1‑48 (MQ=255)
ttGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc > 1:399115/1‑48 (MQ=255)
gCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAtc < 1:960614/49‑1 (MQ=255)
|
GGTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAAACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAATC > NC_000913/4093177‑4093268
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
