Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F999 I0 R1
|
73 |
59.3 |
4372352 |
98.6% |
4311139 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,093,223 |
A→G |
V72V (GTT→GTC) |
rhaM ← |
L‑rhamnose mutarotase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,093,223 | 0 | A | G | 100.0%
| 160.6
/ NA
| 40 | V72V (GTT→GTC) | rhaM | L‑rhamnose mutarotase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (16/24); total (16/24) |
GGTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAAACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAATCT > NC_000913/4093177‑4093269
|
ggTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACa > 1:2725909/1‑50 (MQ=255)
gTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACAt > 1:793254/1‑50 (MQ=255)
ttAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATc < 1:3471498/50‑1 (MQ=255)
aGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCa < 1:2654424/49‑1 (MQ=255)
aGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAg > 1:936199/1‑50 (MQ=255)
gCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGt < 1:3260293/50‑1 (MQ=255)
gCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGt < 1:2392267/50‑1 (MQ=255)
gggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGc > 1:4217/1‑50 (MQ=255)
gggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGc < 1:825420/50‑1 (MQ=255)
gggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGc > 1:2650040/1‑50 (MQ=255)
ggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCt < 1:3347883/50‑1 (MQ=255)
ggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCt > 1:1671348/1‑50 (MQ=255)
cATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTgg > 1:794562/1‑50 (MQ=255)
aTAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTgg > 1:3829220/1‑49 (MQ=255)
aTAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGc < 1:1660919/50‑1 (MQ=255)
aTAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGc < 1:3945326/50‑1 (MQ=255)
tAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCa < 1:89919/50‑1 (MQ=255)
aaCATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCaa > 1:4133827/1‑50 (MQ=255)
ggTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAt < 1:1125934/50‑1 (MQ=255)
ggTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAt < 1:4110880/50‑1 (MQ=255)
atatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGc > 1:2181920/1‑50 (MQ=255)
tatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCg > 1:972411/1‑50 (MQ=255)
tatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCg > 1:3778913/1‑50 (MQ=255)
tttCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGtt < 1:870273/50‑1 (MQ=255)
caccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt < 1:407386/49‑1 (MQ=255)
caccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt > 1:3336314/1‑49 (MQ=255)
caccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt < 1:515887/49‑1 (MQ=255)
accaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCa < 1:3552314/50‑1 (MQ=255)
accaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCa < 1:2255288/50‑1 (MQ=255)
ccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt > 1:207781/1‑47 (MQ=255)
ccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAg < 1:4138778/50‑1 (MQ=255)
caACGTTGGCAGACATCAGTGCTGGCGACCGCATTCCAGCGTTCTTCAGa < 1:2628336/50‑1 (MQ=255)
aCGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAtt > 1:4237403/1‑50 (MQ=255)
cGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc < 1:4290269/50‑1 (MQ=255)
cGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc < 1:1949679/50‑1 (MQ=255)
gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCa < 1:454778/50‑1 (MQ=255)
ttGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCaa < 1:2770436/50‑1 (MQ=255)
ggCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAtc > 1:3634626/1‑50 (MQ=255)
gCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAtct < 1:2398501/50‑1 (MQ=255)
gCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAtc < 1:1024757/49‑1 (MQ=255)
|
GGTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAAACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAATCT > NC_000913/4093177‑4093269
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
