Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F999 I0 R1
|
72 |
72.2 |
7896259 |
97.8% |
7722541 |
35.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,093,223 |
A→G |
V72V (GTT→GTC) |
rhaM ← |
L‑rhamnose mutarotase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,093,223 | 0 | A | G | 100.0%
| 273.1
/ NA
| 65 | V72V (GTT→GTC) | rhaM | L‑rhamnose mutarotase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (25/40); total (25/40) |
CATCGGTCATATATTTCCACCAACGTTGGCAAACATCAGTGCTGGCAACCGCATTCCAGCGTT > NC_000913/4093192‑4093254
|
cATCGGTCATATATTTCCCCCAACGTTGGCAGACa < 1:679832/35‑1 (MQ=25)
cATCGGTCATATATTTCCACCAACGTTGGCAGACa < 1:6332946/35‑1 (MQ=38)
cATCGGTCATATATTTCCACCAACGTTGGCAGACa < 1:4191350/35‑1 (MQ=38)
aTCGGTCATATATTTCCACCAACGTTGGCAGACAt > 1:5103280/1‑35 (MQ=255)
aTCGGTCATATATTTCCACCAACGTTGGCAGACAt > 1:881202/1‑35 (MQ=38)
aTCGGTCATATATTTCCACCAACGTTGGCAGACAt < 1:4719092/35‑1 (MQ=38)
aTCGGTCATATATTTCCACCAACGTTGGCAGACAt < 1:4719056/35‑1 (MQ=38)
aTCGGTCATATATTTCCACCAACGTTGGCAGACAt < 1:5490414/35‑1 (MQ=255)
aTCGGTCATATATTTCCACCAACGTTGGCAGACAt < 1:2746800/35‑1 (MQ=255)
tCGGTCATATATTTCCACCAACGTTGGCAGACATc > 1:1935452/1‑35 (MQ=38)
tCGGTCATATATTTCCACCAACGTTGGCAGACATc < 1:8234/35‑1 (MQ=255)
tCGGTCATATATTTCCACCAACGTTGGCAGACATc > 1:65784/1‑35 (MQ=38)
ggTCATATATTTCCACCAACGTTGGCAGACATCac > 1:4619654/1‑34 (MQ=38)
gTCATATATTTCCACCAACGTTGGCAGACATCAGt > 1:36161/1‑35 (MQ=255)
gTCATATATTTCCACCAACGTTGGCAGACATCAGt > 1:2826302/1‑35 (MQ=255)
gTCATATATTTCCACCAACGTTGGCAGACATCAGt > 1:2574603/1‑35 (MQ=255)
gTCATATATTTCCACCAACGTTGGCAGACATCAGt > 1:6280151/1‑35 (MQ=38)
cATATATTTCCACCAACGTTGGCAGACATCAGTGc > 1:4041420/1‑35 (MQ=38)
atatatTTCCCCCAACGTTGGCAGACATCAGTGCt < 1:5441926/35‑1 (MQ=25)
atatatTTCCACCAACGTTGGCAGACATCAGTGCt > 1:5260518/1‑35 (MQ=38)
atatatTTCCACCAACGTTGGCAGACATCAGTGCt < 1:7744880/35‑1 (MQ=38)
tatatTTCCACCAACGTTGGCAGACATCAGTGCTg < 1:2480289/35‑1 (MQ=38)
tatatTTCCACCAACGTTGGCAGACATCAGTGCTg > 1:867459/1‑35 (MQ=255)
tatatTTCCACCAACGTTGGCAGACATCAGTGCTg < 1:2159558/35‑1 (MQ=38)
atatTTCCACCAACGTTGGCAGACATCAGTGCTgg < 1:7125707/35‑1 (MQ=255)
atatTTCCACCAACGTTGGCAGACATCAGTGCTgg > 1:812266/1‑35 (MQ=255)
tatTTCCACCAACGTTGGCAGACATCAGTGCTGGc > 1:1348888/1‑35 (MQ=255)
tatTTCCACCAACGTTGGCAGACATCAGTGCTGGc > 1:5658222/1‑35 (MQ=255)
tatTTCCACCAACGTTGGCAGACATCAGTGCTGGc > 1:5719808/1‑35 (MQ=255)
tatTTCCACCAACGTTGGCAGACATCAGTGCTGGc > 1:6220628/1‑35 (MQ=255)
tatTTCCACCAACGTTGGCAGACATCAGTGCTGGc < 1:6534822/35‑1 (MQ=255)
tatTTCCACCAACGTTGGCAGACATCAGTGCTGGc > 1:6814470/1‑35 (MQ=255)
tatTTCCACCAACGTTGGCAGACATCAGTGCTGGc < 1:2349972/35‑1 (MQ=255)
tatTTCCACCAACGTTGGCAGACATCAGTGCTGGc > 1:2308109/1‑35 (MQ=38)
atTTCCACCAACGTTGGCAGACATCAGTGCTGGCa > 1:55669/1‑35 (MQ=38)
tttCCACCAACGTTGGCAGACATCAGTGCTGGCaa > 1:1905010/1‑35 (MQ=255)
tttCCACCAACGTTGGCAGACATCAGTGCTGGCaa < 1:6121585/35‑1 (MQ=255)
ttCCACCAACGTTGGCAGACATCAGTGCTGGCAAc < 1:6626908/35‑1 (MQ=255)
ttCCACCAACGTTGGCAGACATCAGTGCTGGCAAc < 1:6871866/35‑1 (MQ=255)
ttCCACCAACGTTGGCAGACATCAGTGCTGGCAAc < 1:7158773/35‑1 (MQ=38)
ttCCACCAACGTTGGCAGACATCAGTGCTGGCAAc < 1:6149671/35‑1 (MQ=255)
tCCACCAACGTTGGCAGACATCAGTGCTGGCAAcc > 1:998290/1‑35 (MQ=255)
ccaccaACGTTGGCAGACATCAGTGCTGGCAACCg > 1:517540/1‑35 (MQ=255)
ccaACGTTGGCAGACATCAGTGCTGGCAACCGCAt < 1:3567838/35‑1 (MQ=255)
ccaACGTTGGCAGACATCAGTGCTGGCAACCGCAt < 1:7149962/35‑1 (MQ=255)
caACGTTGGCAGACATCAGTGCTGGCAACCGCAtt < 1:4442040/35‑1 (MQ=38)
caACGTTGGCAGACATCAGTGCTGGCAACCGCAtt < 1:6977585/35‑1 (MQ=255)
aaCGTTGGCAGACATCAGTGCTGGCAACCGCATTc < 1:1709606/35‑1 (MQ=255)
aaCGTTGGCAGACATCAGTGCTGGCAACCGCATTc < 1:2174890/35‑1 (MQ=255)
aaCGTTGGCAGACATCAGTGCTGGCAACCGCATTc < 1:4291646/35‑1 (MQ=255)
aaCGTTGGCAGACATCAGTGCTGGCAACCGCATTc < 1:3707098/35‑1 (MQ=255)
aaCGTTGGCAGACATCAGTGCTGGCAACCGCATTc < 1:7722292/35‑1 (MQ=38)
aCGTTGGCAGACATCAGTGCTGGCAACCGCATTcc < 1:5933372/35‑1 (MQ=255)
aCGTTGGCAGACATCAGTGCTGGCAACCGCATTcc < 1:5502449/35‑1 (MQ=38)
gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAg < 1:1388647/35‑1 (MQ=37)
gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAg < 1:910453/35‑1 (MQ=255)
gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAg < 1:2194326/35‑1 (MQ=37)
gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAg < 1:6513370/35‑1 (MQ=37)
ttGGCAGACATCAGTGCTGGCAACCGCATTCCAGc > 1:2351659/1‑35 (MQ=255)
tGGCAGACATCAGTGCTGGCAACCGCATTCCAGCg < 1:3975993/35‑1 (MQ=255)
ggCAGACATCAGTGCTGGCAACCGCATTCCAGCGt < 1:3581834/35‑1 (MQ=255)
ggCAGACATCAGTGCTGGCAACCGCATTCCAGCGt > 1:3143173/1‑35 (MQ=255)
ggCAGACATCAGTGCTGGCAACCGCATTCCAGCGt > 1:4370815/1‑35 (MQ=37)
ggCAGACATCAGTGCTGGCAACCGCATTCCAGCGt < 1:5583710/35‑1 (MQ=37)
gCAGACATCAGTGCTGGCAACCGCATTCCAGCGtt < 1:6965237/35‑1 (MQ=255)
gCAGACATCAGTGCTGGCAACCGCATTCCAGCGtt < 1:6395789/35‑1 (MQ=255)
|
CATCGGTCATATATTTCCACCAACGTTGGCAAACATCAGTGCTGGCAACCGCATTCCAGCGTT > NC_000913/4093192‑4093254
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
