Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A14 F999 I0 R1
|
96 |
52.5 |
3964927 |
95.8% |
3798400 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,093,223 |
A→G |
V72V (GTT→GTC) |
rhaM ← |
L‑rhamnose mutarotase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,093,223 | 0 | A | G | 100.0%
| 208.0
/ NA
| 53 | V72V (GTT→GTC) | rhaM | L‑rhamnose mutarotase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (32/21); total (32/21) |
TTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAAACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAATCT > NC_000913/4093179‑4093269
|
ttAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATc < 1:915214/50‑1 (MQ=255)
ggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCt > 1:1147455/1‑50 (MQ=255)
ggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCt < 1:2053870/50‑1 (MQ=255)
gCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTg > 1:3064794/1‑50 (MQ=255)
gCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTg > 1:622210/1‑50 (MQ=255)
tAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGc > 1:1863347/1‑49 (MQ=255)
tAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCa < 1:801245/50‑1 (MQ=255)
aCATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAAc > 1:2742941/1‑50 (MQ=255)
cATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAAcc < 1:2560739/50‑1 (MQ=255)
tCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCg > 1:453811/1‑49 (MQ=255)
cGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCa > 1:935143/1‑50 (MQ=255)
ggTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAt < 1:695705/50‑1 (MQ=255)
gTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAtt > 1:515421/1‑50 (MQ=255)
tCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTc > 1:3553952/1‑50 (MQ=255)
tCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTc > 1:386413/1‑50 (MQ=255)
cATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTc > 1:2843802/1‑49 (MQ=255)
cATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTc > 1:1467166/1‑49 (MQ=255)
atatatTTCCCCCAACGTTGGCAGACATCAGTGCTGGCCACCGCATTCCa < 1:1503098/50‑1 (MQ=38)
atatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTc > 1:2320323/1‑48 (MQ=255)
atatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCa < 1:3055722/50‑1 (MQ=255)
atatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCa < 1:1417409/50‑1 (MQ=255)
tatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAg > 1:1992607/1‑50 (MQ=255)
tatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAg < 1:900675/50‑1 (MQ=255)
tatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCg < 1:252192/50‑1 (MQ=255)
tatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCg > 1:3546032/1‑50 (MQ=255)
tatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCg < 1:3439189/50‑1 (MQ=255)
tttCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGtt < 1:2445900/50‑1 (MQ=255)
tttCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGtt < 1:3784211/50‑1 (MQ=255)
tttCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGtt < 1:2094083/50‑1 (MQ=255)
tttCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGtt > 1:781180/1‑50 (MQ=255)
tttCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGt < 1:2301481/49‑1 (MQ=255)
tCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttct > 1:1071739/1‑50 (MQ=255)
tCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttc < 1:2649099/49‑1 (MQ=255)
ccaccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttct < 1:2779626/49‑1 (MQ=255)
caccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttcttc < 1:589468/50‑1 (MQ=255)
caccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt > 1:232441/1‑49 (MQ=255)
accaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt > 1:338140/1‑48 (MQ=255)
accaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt > 1:3718399/1‑48 (MQ=255)
accaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt > 1:2194857/1‑48 (MQ=255)
caACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt > 1:379248/1‑46 (MQ=255)
caACGTTGGCAGAAATCAGTGCTGGCAACCGCATTCCAGCGttctt > 1:2587051/1‑46 (MQ=38)
aaCGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAt > 1:2849112/1‑50 (MQ=255)
aaCGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAt > 1:2042921/1‑50 (MQ=255)
aCGTTGGCAGACATCAGTGCTGGCTACCGCATTCCAGCGTTCTTCAGAtt < 1:3377321/50‑1 (MQ=255)
aCGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAtt < 1:1364254/50‑1 (MQ=255)
cGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAtt > 1:2783758/1‑49 (MQ=255)
cGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAtt > 1:2597461/1‑49 (MQ=255)
gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc > 1:1458217/1‑49 (MQ=255)
gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCa < 1:114567/50‑1 (MQ=255)
tGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAt > 1:2994811/1‑50 (MQ=255)
ggCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAtc > 1:2587852/1‑50 (MQ=255)
gCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAtct > 1:1732182/1‑50 (MQ=255)
gCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAtct > 1:3360492/1‑50 (MQ=255)
|
TTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAAACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAATCT > NC_000913/4093179‑4093269
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
