Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F2 I0 R1
|
193 |
6708.0 |
8620653 |
98.5% |
8491343 |
136.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,444,704 |
T→G |
15.3% |
T530P (ACC→CCC) |
btsT ← |
pyruvate/proton symporter BtsT |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,444,704 | 0 | T | G | 15.3%
| 352.3
/ 20.8
| 219 | T530P (ACC→CCC) | btsT | pyruvate/proton symporter BtsT |
| Reads supporting (aligned to +/- strand): ref base T (74/106); new base G (37/2); total (111/108) |
| Fisher's exact test for biased strand distribution p-value = 1.20e-10 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 227 total aligned reads displayed.
GGTTGGAAATACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGCCCATGTCAGCC > NZ_CP022686/3444572‑3444843
|
ggAAATACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGa < 1:771982/140‑1 (MQ=255)
taaaTACCGAACAGCGGCCACAGGATCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGaa < 5:811247/139‑1 (MQ=255)
aCCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGa < 2:10322/140‑1 (MQ=255)
gAACAGCTGCCACAGGCTCTTAACGCCGCCCAGCTGATCGACCACGCCCTTATACAGCAGGTATCCCCACAGAACCACACAGCCCGCCGTACCGATGATACCGGCAACCAGAGAGGCGGTTTTTTTCAGGAACGGGATGa < 1:820335/140‑1 (MQ=255)
aCAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAg < 4:23117/140‑1 (MQ=255)
catcGGCCACAGGCTCTTAACGCCGCCCAGCCGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCAGCAGTAGAGATGATACCGGCAACCAGAGAGGCGGTTGTGTTAATGAAAGCGATAAAGt > 1:348312/4‑140 (MQ=255)
cAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTCGCCCCCCAGACCCACACAGCCCGCAGTACCGATGATACCGGCCACCAGAGAGTCGGTTTTTTTAAGGAAAGGGATGCAGt > 6:549841/1‑140 (MQ=38)
cAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGt < 7:242226/140‑1 (MQ=255)
cAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGt < 4:177555/140‑1 (MQ=255)
cAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTGAGGCACGGGTTGATGt > 5:908073/1‑140 (MQ=38)
cGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCCCAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGAACGGGATGAAGTTAc > 3:390181/1‑140 (MQ=255)
cGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACACCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTATTTTTGAGGAACGGTATGAATTTaa > 6:846963/1‑139 (MQ=38)
cGGCCACAGGCTCTTAACGCCGCCCAGAGGATCGACCACGCCCTGATACAGCAGGTAGACCCACAGACCCACACAGCCCGCAGTACCGATGATACAGGCAACCAGAGAGTCGGTTTTTTTGATGAACGGGTTGAAGTTaa > 8:866921/1‑139 (MQ=255)
acaGGCTCTTAACGCCGCCCCGCGGATCGCCCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTGAAGAACGGGATGTAGGTACCcagc > 1:1024404/1‑140 (MQ=255)
acaGGCTCTTAACGCCGCCCAGCGGATCGACCACTCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCcagc < 5:305668/140‑1 (MQ=255)
ggCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGTTGAAGTTACCCAGCCgg > 7:384480/1‑140 (MQ=255)
ctTAACGCCGCCCAGCGGATCGACCACGACCTGATACAGCATGCAGCCCCACAGACCCACACAGCCCGAATTACCGATGATACAGGCAACAAGAGAGTCGGTTATTTTCAGGAACGGTATGAAGTTACCCAGCAGGTCtt < 2:823848/140‑1 (MQ=255)
ttaaacccggcCAGCGGATCCCCCACGCCCTGCTACAGCACGGACCCCCACAGACCCCCACAGGCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGGTACCCAGCAGGTCTTg < 6:930858/134‑1 (MQ=255)
ttAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTg < 7:48931/140‑1 (MQ=255)
ttAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACAAAGCCCGCAGTACCGATGATACCGGCAACCAGACAGTCGGGTTTTTTCAGGCACGGGATGAAGTTACCCAACACGTCTTg > 8:655363/1‑140 (MQ=39)
tAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACCGGATGAAGTTAACCAGCAGGACTTgc > 5:591361/1‑140 (MQ=255)
ccgccCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGCCCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCCGCAt > 2:618575/1‑140 (MQ=255)
cgccCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTAAGGAACGGGATGAAGTTACCCAGACGGTCGTTCAGCATa > 2:759518/1‑140 (MQ=39)
gccCAGCGGATCGCCCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATaa > 4:845505/1‑140 (MQ=255)
gccCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCCCACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCCTCAGGTGTTGCCGCATaa > 7:296574/1‑140 (MQ=39)
gccCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCATTAACGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAAGAACGGGATTTATTTACCCAACCTGTCTTTGAGCAtta > 3:919644/1‑138 (MQ=37)
cGGATCGACCAGGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGTGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGc < 3:526931/140‑1 (MQ=255)
cGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGAACGGGATGAAGTTACACAGCAGGTCTTGCAGCATAAAGCGGc > 7:910816/1‑140 (MQ=255)
cGGATCGACCACGCCCTGATACAGCAGCTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGCGTCGGGTTTTTTAAGGAAACGGATGAAGTTACCACGCAGGTCGTGCCGCAAAAAGCggg > 4:360902/1‑139 (MQ=255)
ggACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGGCTTGCAGCATAAAGCGGCCAGaa < 8:195601/139‑1 (MQ=255)
cACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACggg < 2:428159/140‑1 (MQ=255)
cACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACggg < 2:504751/140‑1 (MQ=255)
aCGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGt > 4:1067019/1‑140 (MQ=255)
gATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGCACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGcc > 4:778260/1‑139 (MQ=255)
cagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCACCCAGAGAGTCGGTTTTTTTCAGGAACGGGATTAAGTTACCAAGCAGGTCTTGCAGCATAAAGCGGCCAGAAACGGTACCCGCATCCAgcg > 2:200158/1‑140 (MQ=255)
cagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAgcg < 3:853656/140‑1 (MQ=255)
cagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTAAGGAACGGGGTGCAGTTACCCCGCAGGTGTTGCCGCATAAAGCGGCCACAACGGGTACCCCCAACCaccc > 5:858168/1‑137 (MQ=255)
tAGCCCCACAGACCCACACAGCCCGCAGTACCGATGTTACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGGTACCCAGCAGGTCTTGCAGCATACAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGt < 5:468277/140‑1 (MQ=255)
cgCCCCACCGCCCCACACAGCCCGCAGTACCGCTGATACCGGCAACCAGATAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGGCATGCAGCATAAACCGGCCAGAACGGGTACCCGCATCCAGCGCGGTc < 5:789237/139‑1 (MQ=255)
cgCCACACACACCCACCCCGCCCGCAGTACCGATGATCCCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTc < 3:403998/139‑1 (MQ=255)
aGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCATGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTc < 7:963772/140‑1 (MQ=255)
aGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTc < 6:626627/140‑1 (MQ=255)
aGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTAAGGTACGGGATGAAGTTACCCAGCAGGTATTTCCGCATAAAGCGGCCAGCACGGGTACCCGCATCCAGCGCGGTc > 1:672589/1‑140 (MQ=255)
aGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTAAGGAACGGGATTAAGTTACCCCCCAAGTCATGCAGCAGAAAGCCGCCACAACGGGTACCCCCATCACCCGCGGTc > 8:487476/1‑140 (MQ=255)
aGCCCCACAGACCCACACAGCCCGCAGTACCGATGATAACGGCAACCTGAGATTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCATCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTc < 1:13728/140‑1 (MQ=255)
ccccACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTAAGGGACGGGGTGTAGTTACCCAGCCGGTGTTGCAGCATAAATCGGCCAGCACGGGTACCCCCATCCAGCGCGGtgac > 7:631144/1‑137 (MQ=255)
cccACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAgg < 8:220181/140‑1 (MQ=255)
cacaGACCCACACAGCCCGCAGTACCGATGATACCGGCACCCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAACCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGAt < 5:2533/140‑1 (MQ=255)
cacaGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGAt < 5:66037/140‑1 (MQ=255)
gACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGGTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCCGAACCGGTACCCGCATCCAGCGCGGTCAGGATGaaa > 4:551842/1‑139 (MQ=255)
cccccCACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAACGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACa < 1:724894/139‑1 (MQ=255)
ccccACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGAAGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACa < 5:688597/139‑1 (MQ=255)
aCCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGTTTAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATACAGCGCGGTGAGGATGAACa > 4:901802/1‑140 (MQ=255)
aCCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACa < 4:625719/140‑1 (MQ=255)
ccACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTGAGGGACGGGATGAAGTTACCCAGCAGGTCGTGCAGCATAAAGCGGCCAGAACCGGTACCCGCATCCAGCGCGGGCAGGATGAACAGt > 6:476882/1‑140 (MQ=255)
cacaGCCCGCATTACCGATGATACCGGTAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTTCCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCt < 8:790997/140‑1 (MQ=255)
cacaGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTGAGGAACGGGTTGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCACAACGGGTACCCCCAAACAGCGCGGTCAGGATGAACAGTGCt > 5:92063/1‑140 (MQ=255)
cacaGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGTGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCt < 7:894181/140‑1 (MQ=255)
cacaGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGACCGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCt < 8:277468/140‑1 (MQ=255)
cacaGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCCTAAAGCGGCCAGAACGGGTACCCGCATACAGCGCGGTCAGGATGaaaatgtct > 7:13135/1‑133 (MQ=255)
cccGCAGTACGGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGaa < 5:722934/140‑1 (MQ=255)
cccGCAGTACCGATTATACCGGCAACCAGAGAGTCGTTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCATCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGaa < 7:804038/140‑1 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGaa > 6:618073/1‑50 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGaa < 5:618073/50‑1 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGTTGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCgca > 6:137618/1‑138 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAATTTACCCAGCAGGTCTTGCAGCATAAAGCGGACAGAACGGGTTCCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCgca > 2:261002/1‑138 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCCGCAGGTATTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGaa > 7:193526/1‑140 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGaa < 3:694242/140‑1 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGaa < 4:151433/140‑1 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGaa < 3:781431/140‑1 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGAGGAAGTTACCCACCAGGTCTTGCAGCCTAAAGCGGCCCGACCGGGTACCCGCAGCCACCGCGGTCCGGATGAACAGTGATTCGaa > 4:1002212/1‑140 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAAGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACCGGTACCCGCCTCCCGCGCGGTCCGGTAGAACAGTGCATCGaa > 8:38746/1‑140 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTATTTCACGAACGGGATGAACTTAACCCGCAGGTCTTGCCGCAGAAATCGTCCAGAACAGGTACCCGCAACCCGCGCGGGAAGGATGATCAGTGGATCGaa > 8:708649/1‑140 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTGTTTTTCAGGAACGGGATGCAGTTACCCCGCCGGTCGTGCAGCATATATCGGCCAGCACGGGTACCCGCATACCACGCGGTCATGATGAACAGTGCGTCgca > 8:419757/1‑138 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTGAGGAACGGGATGAAGTTACCCAGCAGGTGTTGCAGCATAAAGCGGCCAGAACCGGTACCCGCCTACAGCGCGGGCAGGATGAACAGTGCTTCGaa > 1:1003536/1‑140 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCAAACAGCGCGGTCAGGATGAACAGTGCTTCGaa > 5:548049/1‑140 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGAACGGGATGAAGATACCCAGCATGTCTTGCAGCATAAAGCGGCCAGAAAGGGTACCAGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGaa < 6:350705/140‑1 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTAAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGCACGGGTACCCGCATCCCGCGCGGTCAGGATGAACAGTGCTTCGaa > 8:763971/1‑140 (MQ=255)
cccGCAGTACCGATGATACCGGCAAACATAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGaa < 7:866921/140‑1 (MQ=255)
cccGCAGTACCGAAGCTACCGGCAACCAGAGAGTCCGTTTTTTTCAGGAACGGGGTGAACGTACCCCGCCGGGCGTGAAGCATAAACCGGCCCCAACGGGGACCCGCCTCCCGCGCGGGCAGGGGGAACAGTGCTTAGaa > 2:220551/1‑140 (MQ=255)
cAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGa < 7:757852/140‑1 (MQ=255)
aCCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTGAGGAAAGGGTTTAATTTAACCAGCAAGTGTTTCAGCATAAAGAGGCCAGAACGGGTAACCGCCTCCAGCGAGGGCAGGCTGAACAGTGCTTAGAACAGAATAc > 6:192831/1‑140 (MQ=255)
ccGATTATACAGGCAACCAGATATGCGGTTTTTTTCAGTAAAGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTACGAACAGAATAcc < 7:584405/140‑1 (MQ=255)
ccGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCGAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATAcc < 6:998122/140‑1 (MQ=255)
atgatACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGaa < 6:745927/140‑1 (MQ=255)
atgatACCGGCAACCAGAGAGTCGGGTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGCCCGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGaa > 8:611793/1‑140 (MQ=255)
atgatACCGGCAACCAGAGAGTCGGGTTTTTTACGGCACAGGATTAAGTTACCCAGCATGTCAAGCAGCAAAAAACGCGCAGAACCGGGTCCCCCAACCAGCCCGGGCAAGCTGACCCTTGCTTCGATCACAATACCGaa > 6:261062/1‑140 (MQ=255)
tgatACCGGCAACCAGAGAGTCGGTTTTTTTAAGGAACGGGATGAAGTTACCCAGAAGGTATTGAAGCATAAAGCGGGCAGTACGGGTACCCGCATACAGCGCCGTAAGGATGATCAGTGCTTCGAACAGAATACCGAAg > 3:142242/1‑140 (MQ=255)
tACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGa < 8:314940/140‑1 (MQ=255)
tACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGa < 3:439225/140‑1 (MQ=255)
aCCGGCAACCAGAGAGTCGGTTTTTTTGAGGAACGGGATGAATTTACCCAGCAGGTCTTGCAGCATAAAGCGGCAAGAACGGGTACCCGCCTCCAGCGCGGTCAGGATGAACAGTGCTTATCACAAAAAACCGaaattat > 7:684476/1‑135 (MQ=255)
aCCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCtt > 4:261166/1‑59 (MQ=255)
aCCGGCAACCAGAGAGTCGGTTTTTTTAAGGAAACGGGTGAAGTTAACCAGCAGGTCTTGCAGCATAAAGCGGGCAGAACGGGTAACCCCATACCGCGCGGTCAGGGATAACAGTGCTTCGAAAAGAATACCGAATTGaa > 6:705059/1‑139 (MQ=255)
gggCAACCAGAGAGTCGGTTTTTTTCTGGAAGGGGCTGACGTTACACAGCAGGTCTTGCAGCATTAAGATGCCAGAACGGGTACCCGCATCGAGCGCGGGCAGGATGAACAGTGCTTCTAACAGAATACCGAAGTGATAc < 8:540738/139‑1 (MQ=255)
cGGCAACCAGAGAGTCGGTTTTTTTAAGGAACGGGATGAAGTTACCCCGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTTACCCCAAGCCGCGCGGTCAGGATGAACACTGCGTCGAACAGAATACCGCACTGATAc > 2:470155/1‑140 (MQ=255)
cAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCAg < 5:356184/140‑1 (MQ=255)
tCGGTTTTTTTAAGGAACGGGATGAAGTTAACCAGCAGGTCTTTCAGAATAAATCGGCCAGAACGGGTACCCGCATCCAGAGCGGTCAGGATGAACAGTGCTTCGAACAGAATAACGAAGTGATACCAGAATCCCATGtg > 6:4973/1‑139 (MQ=255)
tttttttCAGGATCGGGATGATGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCAGATGCCCATGTCAGcc < 7:831408/140‑1 (MQ=255)
tttttttCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGCCCATGTCAGcc < 4:34111/140‑1 (MQ=255)
ttttattCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGCCCATGTCAGcc < 3:84484/140‑1 (MQ=255)
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GGTTGGAAATACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGCCCATGTCAGCC > NZ_CP022686/3444572‑3444843
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
