Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F2 I0 R1
|
233 |
6461.8 |
9239822 |
98.3% |
9082745 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,444,704 |
T→G |
14.1% |
T530P (ACC→CCC) |
btsT ← |
pyruvate/proton symporter BtsT |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,444,704 | 0 | T | G | 14.1%
| 356.1
/ 16.5
| 212 | T530P (ACC→CCC) | btsT | pyruvate/proton symporter BtsT |
| Reads supporting (aligned to +/- strand): ref base T (74/103); new base G (33/2); total (107/105) |
| Fisher's exact test for biased strand distribution p-value = 2.78e-09 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 220 total aligned reads displayed.
CTGGTTGGAAATACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGCCCATGTCAGCC > NZ_CP022686/3444570‑3444843
|
cTGATTGGAAATACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCTGgttttt > 8:743105/1‑140 (MQ=255)
ggTTGGAAATACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGCCCACGCCCAGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTGTTTTTc > 2:698269/1‑140 (MQ=255)
gTTGGAAATACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACCGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCa > 4:515375/1‑140 (MQ=255)
ggAAATACCGAACAGCGGCCACAGGCGCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGa < 8:227601/140‑1 (MQ=255)
gAAATACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGaa < 1:411914/140‑1 (MQ=255)
aCCGAACAGCGGCCACAGGCTCTTAACTCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGa < 3:488136/140‑1 (MQ=255)
ccGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACAGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACCGGAt > 8:390537/1‑140 (MQ=255)
actccGGCCACAGGCTCTTAACGCCGCCCTGCGGATCGACCTCGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCCGTACCGATGATACCTGCAACCATAGAGTCGGTTTTTTTCAGGAACGGGATGAAg < 3:412405/136‑1 (MQ=255)
aCAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGTCCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCGCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAg < 7:874627/140‑1 (MQ=255)
cGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGAAGAAGTTaa > 7:1072088/1‑139 (MQ=255)
ggCCACAGAGTGTTAATACCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGa < 2:1161545/130‑1 (MQ=37)
ccaGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCcagc < 8:26521/139‑1 (MQ=255)
acaGGCTCTTAACGCCGCCCAGCGGATCGCCCACGCCCTGATACAGCAGGTAGCCCCACCGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGGCGGTTTTTTTCAGGAACGGGATGAAGTTACCcagc < 8:31548/140‑1 (MQ=255)
acaGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCcagc < 7:705638/140‑1 (MQ=255)
acaGGCGCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCcagc < 4:424013/140‑1 (MQ=255)
gtctTAAGGCCGCTCAGTGGATCGACCACGCCCTGTTACAGCAGGTACCCCCACAGAACCACACACCCCCCAGTACCGCTGATTCCGGCCACCAGAGAGTCGGTTTTTTTCCGGTACGGGATGAAGTTACCCCGCAGGTc < 1:1157374/139‑1 (MQ=255)
ctctTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTc < 4:565933/140‑1 (MQ=255)
ttAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATTATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCt < 6:16147/138‑1 (MQ=255)
ttAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTGTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGGCTTg > 8:151759/1‑140 (MQ=255)
ttAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGGCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTg < 7:485353/140‑1 (MQ=255)
ccAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAg < 2:1107599/140‑1 (MQ=255)
gggATCGACCACGCCCTGATCCAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGc < 1:888511/139‑1 (MQ=255)
tCGACCACGCCCTTATACAGCACGTAGCCCCACAGACCCACACAGCCCGCAGTACCTACGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGa < 8:64376/140‑1 (MQ=255)
cGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCTGTTTTTTTAAGGAACGGGATTAAGTTAAACAGCAGGTCTTGCAGAATAAAGCGGACATaa > 2:238731/1‑140 (MQ=255)
aCCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCACGAACGGGATGAAGTTAACCATCAGGTCTTGCCGCAAAAAGCGGCCAGAACg > 4:121031/1‑140 (MQ=255)
aCCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCAGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTAGCACCATAAAGCGGCCAGaa > 6:449529/1‑138 (MQ=255)
cACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACggg < 2:149387/140‑1 (MQ=255)
cACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACggg < 1:630576/140‑1 (MQ=255)
cACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACg < 6:216236/138‑1 (MQ=255)
aCGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGCTACCGGCAACCAGAGAGTCGGGTTTTTTCAGGAACGGGATGAAGTTTACCAGCAGGGCTTGCAGCAAAAAGCGGCCCGCACGGGt > 7:571877/1‑140 (MQ=255)
cccTGATACAGCAGGTAGCCCCACAGCCCCCCACAGCCCGCAGTACCGATGATACCGCCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTAcc < 1:1062908/140‑1 (MQ=255)
cccTGATACAGCAGGTAGCCCCACAGACCCCCAAAGCCCGCAGTACCGAGGATACCGGCAACCAGAGAGGCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTAcc < 4:37226/140‑1 (MQ=255)
cccTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTAcc < 2:1049785/140‑1 (MQ=255)
cccTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGAAACGGATGAAGTTACCCAGCAGGTCTTTCAGCATAAATCGGCCCTCACGGGTAcc > 4:1068474/1‑140 (MQ=255)
aTACAGCAGGTAGCCCCACAGCCCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTAAGGAACGGGAAGAAGTTAACCAGCAGGTGTTGCAGCCTAAAGCGGCCAGCACGGGTACCCGcca > 1:566110/1‑138 (MQ=255)
cagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATCCCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAgcg < 8:116364/140‑1 (MQ=255)
cagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGaa > 8:837735/1‑75 (MQ=255)
cagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCCGAACCGGTACCCGCATCCcgcg > 4:655261/1‑140 (MQ=255)
cagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGACAGAAAGGGTACCCGCATCCAgcg > 8:434702/1‑140 (MQ=255)
cagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGAAGAACTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCCTCCAgcc > 4:82395/1‑139 (MQ=255)
cagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTGAGGAACGGGATGTAGTTACCCAGCAGGTGTTGCAGCATAAAGCCGCCAGCACGGGTACCCCCATCCcgcg > 1:985933/1‑140 (MQ=255)
cagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGAACGGGATGAAGTTAACCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAgcg > 4:764940/1‑140 (MQ=255)
cagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTAAGGAACGGGATGAAGTTACCCAGCCCGTGGTGGCCCGTAAAACGGCCAGCACCGGGACCCCCCTCCcgcg > 7:214647/1‑140 (MQ=255)
cagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGAAACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAACACGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCCgcc > 8:481336/1‑139 (MQ=255)
ggTAGCCCCACAGACCCACCCAGCCAGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAAAGGGATGAAATTCCCCACCAGGGCATGCAAGAAAAAGCGTCCAGACCGGGTACCCCCCACCAGcccg > 8:1004158/1‑140 (MQ=255)
ggTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATCCCGGCAACCAGCGAGTCGGGTTTTTTAAGGACCGGGATGAAGTTACCCCGCAGGGGATGGAGGAGAACGCGGCCAGAACCGGTACCCGCATCGAgcg > 6:397803/1‑138 (MQ=255)
ggTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGACCGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAgcgcc > 1:1177139/1‑139 (MQ=255)
ggTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTGTTTTTAAGGAAAGGGATGGAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGGCAGAACGGGGACCCGCATACAgcg > 6:505478/1‑138 (MQ=255)
aGCCCCACAGACCCACACATCCCGCAGTACCGATGATACCGGAAACCAGAGAGTCGGTTTTTTTCAGGAACTGGATGAAGTTACCCAGCAGGGCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCgggc < 7:390537/140‑3 (MQ=255)
aGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCgg < 5:734535/138‑1 (MQ=255)
aGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGGCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTc < 1:693017/140‑1 (MQ=255)
aGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGGCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGGCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTc < 8:673357/140‑1 (MQ=255)
aGCCCCACAGACACACACAGCCCGCAGTACCGATGATACCGCCACCCAGAGAGTAGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGTTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCgg < 6:1013978/138‑1 (MQ=255)
cccACAGACCCACACCGACCGCAGTAACGTTGATACCGTCATCCAGAGAGTCGGTTTTTTTCAGGAACGGGTTGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCa < 5:372234/138‑1 (MQ=255)
aGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGACCGGGCAGAAGTTACCCAGCCGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCCGCGCGGTCAGGATGaa > 7:74393/1‑140 (MQ=255)
ccccACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGTGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACa < 1:470571/139‑1 (MQ=255)
ccccACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCCTAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGaa < 5:774989/137‑1 (MQ=255)
aCCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGaa < 6:58406/138‑1 (MQ=255)
cacaGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGCTCGGGATTAAAGTACCCAGCAGGTGATGAAGCATAAATCAGCCAGACCCGGGACCCGCATCAATCCCGGGCAGCCTGACCAGTg > 5:952612/1‑138 (MQ=255)
cacaGCCCGCAGTACCGATGATACCGGCAACCACAGAGTCGGTTTTTATCAGGAACGGGATGAAGGTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTg < 5:548996/138‑1 (MQ=255)
cccGCATTACCGTTGATAACGGCAACCCTAGAGTCGTTTTTTTTCAGGAATGGGATGAATTTACCCAGCAGGTCTTGCATCATACAGCGGCCAGAAAGGGTACCCGCATCCAGCGCGGGCAGGATGAACAGTGCTTCGaa < 7:134283/140‑1 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTTACCCGCAGGTGTTGCAGCATAAACCGGCCACAACCGGTACCCCCATACAGCGCCGTCAGGATTAACCGTGCTTCgca > 1:164144/1‑138 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTg < 3:577342/77‑1 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGaa < 8:380663/140‑1 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGTACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAATAGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGaa > 3:817376/1‑140 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGCACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCAAGAACGGGTACCCGCATCCCGCGCGGGCAGGATGAACAGTGCTTCGaa > 1:33099/1‑140 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCCGCGCGGTCAGGATGAACAGTGCTTCGaa > 8:930565/1‑140 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGaa > 2:827000/1‑140 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTGTTTTCAGGACCGGGAGGAAGTTACCCAGCAGGGCTTTCAGCATAAAGCGGCCCGCACGGGTACCCGCATCCACCGCGGTCAGGAAGAACAGTGCGTCGag > 2:622798/1‑139 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTGAGGCACGGGATGAAGTTACCCAGCAGGTCTTGCACCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTGAGGGTGAACAGTGCTTCGaa > 2:221757/1‑140 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTGAGGAACGGGATGAAGTTACCCAGCAGGGCTTGCAGCATAAAGCGGCCAGAACCGGTACCCGCCGCCAGCGCGGTCAGGATGCACAGTGCGTCGaa > 4:384612/1‑140 (MQ=255)
cccGCAGTACCGAAGATACCGGCAACCAGAGAGTCGGGTTTTTTCATGAAACGGAAGAACTTACCCAGCAGGTCATGCAGCATAAAGCGGCCAGAACGCGTACCCGCATACCGCGCCTGCAAGATCAACAGTGCTTCGaa > 4:924021/1‑140 (MQ=255)
ccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAAc < 2:308325/140‑1 (MQ=255)
ccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGAACGGGATTAAGTTACACAGCAAGTCTTGCAGCATAAATCGGCCACAACGGGTACCCGCATCCCGCGCGGTAAGGATGAACAGTGCTTCGAAc > 1:593776/1‑140 (MQ=255)
cGCAGTCCCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACa < 4:669038/140‑1 (MQ=255)
cGCAGTACCGATGATACCGGCCACCAGAGAGTCGGGGTTTTTCAGGAACGGGATGAAGGTACCCAGCAGGTCTTGCAGCAGAAAGCGGCCCGAACGGGGACCCGCATCCAGCGCGGGCAGGATTCACAGTGCTGCGaa > 6:554144/1‑138 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGCTGAAGTTAACCAGCAGGTCTTGAAGCATAAAGCGGCCAGAACGGGTACACCCATCCAGCGCGGTCAGGCTGGACAGTGCTTAGaa > 6:860361/1‑138 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACa < 3:246209/140‑1 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACa < 3:1014501/140‑1 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGAACGGGATGAAGTTACCCAGCCGGTCTTTCATCAGAAAGCGGCCAGAACGGGGACCCCCCTCCAGCGCGGTCAGGATGAACAGTGGTTCGaa > 5:1045654/1‑138 (MQ=255)
aGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGaa < 1:1091340/140‑1 (MQ=255)
cGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCg > 3:1101030/1‑140 (MQ=255)
atgatACCGGCAACCAGAGAGTCGGTTTTTTTGAGGGACGGGATGAAGTTTCCCAGCAGGGCTTGCGGCATAAAGCGGCCAGAACGGGGACCCGCATCCAGCGCGGGGAGGATGAACAGTGCTTCGGAAAGaaaaacgca > 2:408360/1‑133 (MQ=255)
atgatACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGaa < 2:526542/140‑1 (MQ=255)
atgatACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTAGCAGCATAAAGCGGCCAGAAAGGGTACCCGCCTCCAGCGCGGGGAGGATGAACCGTGCTTCGAACAGAAGACCGaa > 4:465722/1‑140 (MQ=255)
gatACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCa > 6:1124867/1‑107 (MQ=255)
gatACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCa < 5:1124867/107‑1 (MQ=255)
tACCGGCATCCTGAGAGTCTGTTATTTTCTGGAACGGGATTATGTTCCCCAGCAGGGATTGCTGCATAATGCGGCCAGAACGGGTTCCGGCATCCAGCGCGGTCAGGATGAACTGTGCTTCGAACAGATTACCGTAGTGa < 4:134256/140‑1 (MQ=255)
tACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGa < 3:1154257/140‑1 (MQ=255)
aCCGGCAACCAGAGAGTCGGTTTTTTTCAGGCACGGGATGCAGTTTCCCAGCAGGGCTTGCAGCAAAAAGCGGCCCGCACCGGTACCCGCCTCCAGCGCGGTCCGGATGCACAGTGCTTAGAACACAATAACGAAGTTAt > 4:732387/1‑140 (MQ=255)
aCCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAAAACTGCTTCGCACAGAATACCGAAGTGAt > 4:610802/1‑140 (MQ=255)
aCCGGCAACCAGAGAGTCGGGTTTTTTGAGGGACGGGTTGAAGTTTCCCAGCAGGTCTTGCAGCAAAAAGCGGCCAGAACGGGTACCCGCCTCCAGCGCGGGCAGGATGAACAGTGCGTCGAACAGAATAACGAAGTGAt > 8:503631/1‑140 (MQ=255)
cGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGAt > 6:329827/1‑138 (MQ=255)
agTCGGGTTTTTTAAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCCGCAAAAAGCGGGCAGCACGGGTAACCCCATCCACCGCGGGCAGGATTAACAGTGCTTAGAACAGAATAACGAAGTGAAAACAAAAGACCAta > 2:387653/1‑139 (MQ=255)
gTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGCCCAt < 6:892139/138‑1 (MQ=255)
gTTTTTTTAAGGAACGGGATGAAGTTAACCAGCAGGTCATGCAGCATAAAGCCGCCAGAACGGGTTCCCGCATCCAGCGCGGTCAGGATGACCACTGCTTCGAACAGAATACCGCAGTGATAACAGAACCCCATCTCAGc > 4:1023973/1‑140 (MQ=255)
tttttttCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAACGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTGCGAACAGAATACCGAAGTGATACCAGAAGCCCATGTCAg < 5:395720/138‑1 (MQ=255)
tttttttCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGTATTAAAAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGCCCATGTCAg < 6:830641/138‑1 (MQ=255)
tttttttCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGCCCATGTCAGcc < 4:884393/140‑1 (MQ=255)
tttttttCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGAATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAATTGATACCAGAAGCCCATGTCAGcc < 7:969222/140‑1 (MQ=255)
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CTGGTTGGAAATACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGCCCATGTCAGCC > NZ_CP022686/3444570‑3444843
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
