Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F35 I0 R1
|
195 |
10216.4 |
8585726 |
98.3% |
8439768 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,444,704 |
T→G |
15.5% |
T530P (ACC→CCC) |
btsT ← |
pyruvate/proton symporter BtsT |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,444,704 | 0 | T | G | 15.5%
| 322.6
/ 17.4
| 195 | T530P (ACC→CCC) | btsT | pyruvate/proton symporter BtsT |
| Reads supporting (aligned to +/- strand): ref base T (62/98); new base G (33/2); total (95/100) |
| Fisher's exact test for biased strand distribution p-value = 4.71e-10 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 199 total aligned reads displayed.
GGAAATACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATG‑AACAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGCCCATGTCAGCC > NZ_CP022686/3444576‑3444843
|
ggAAATACCTAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCATGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGa < 1:1098296/140‑1 (MQ=255)
ggAAATACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGCCCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAg < 6:670853/138‑1 (MQ=255)
gAAATACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGaa < 4:184102/140‑1 (MQ=255)
aCCGATCAGCGGCCACAGGCTCTTAACTCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGa < 7:31792/140‑1 (MQ=255)
aCCGAACAGCGCCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGa < 4:231846/140‑1 (MQ=255)
ccGAACAGCGGCCACAGGCTCTTAACGACGCCCAGCGGATCGACAACGCCATGATACAGCAGGTAGCCCAACAGACCCACACAGCCCGCAGTCCCGATGATACCGGCAACCAGAGATTCGGTTGTTTTCAGGACAGGGAt > 3:451336/1‑140 (MQ=255)
gaccAGCGGCCACAGGCTCTTATCGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGGAGCCCCACAGACCCACACAGCCCGCATGACCGCTGATACCGTCAACCAGAGAGTCTGGTTTTTTCAGGAACGGGATGa < 7:169534/137‑1 (MQ=38)
gAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGa < 1:336393/140‑1 (MQ=255)
gAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGAACggggt > 5:454870/1‑136 (MQ=255)
aCAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATTCAGCAGGTAGCCCCACAGACCCTCACAGCCCGCAGTACCGATGATTCCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGTAg < 8:359762/140‑1 (MQ=255)
aCAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAg < 1:209959/140‑1 (MQ=255)
gCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACCCAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGGACGGGATGAAGTTTccc > 8:28437/1‑140 (MQ=255)
acaGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCCCACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGAGGAAGTTACCcagc < 4:808632/140‑1 (MQ=255)
acaGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCcagc < 4:251437/140‑1 (MQ=255)
acaGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCcagc < 7:732206/140‑1 (MQ=255)
acaGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCcagc < 7:901274/140‑1 (MQ=255)
acaGGCTCTTAACGCCGCCCAGCGGAGCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCcagc < 8:773613/140‑1 (MQ=255)
ttAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTg < 7:942823/140‑1 (MQ=255)
ttAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTg < 3:27374/140‑1 (MQ=255)
ttAACGCCGCCCAGCGGAGCGACCACGCCCTGATACAGCAGGGAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGGCGGGTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCt < 5:756378/138‑1 (MQ=255)
aaCGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGATTCGGTTTTTTTCAGGAACGGGAGTAAGGTACCCAGCAGGTCTTg > 6:424132/1‑138 (MQ=255)
ccgccCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACAGATGATACCGGCAACCAGAGAGTCGGGTTTTTTGACCTACGGGATGAAGTTACCAAGCAGGTCTTggcgact > 7:395801/1‑134 (MQ=38)
cgccCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGAACGGGATGAAGTTAACCAGCAGGTCTTGCAGCATa > 4:1034960/1‑140 (MQ=255)
gccCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCCGCATaa > 1:427695/1‑140 (MQ=255)
gaacGACCACGCCCTGATCCAGCAGGTAGGCCCACCGACCCACACAGCCCTCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGGTACCCTGCAGGTCTTGCAGCATAAAGCGGCCa < 7:990314/137‑1 (MQ=255)
aTCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAg < 2:428898/140‑1 (MQ=255)
cGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAATCGGCCAGaa > 1:749846/1‑140 (MQ=255)
cGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGaa < 8:535275/140‑1 (MQ=255)
aCCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCATGTACGGGCTGAAGTTAAACAGCAGGGGTTTCAGCATAAAGCGGCCAGaaaa > 3:825186/1‑138 (MQ=255)
ccACGCCCTGATACAGCAAGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGAACGGGTTTAAGTTACCCAGCGGGACTTGCAGGAAAAAGCTGACAGAActg > 8:763246/1‑138 (MQ=255)
cccGCCATTATACAGACGGTAGCCCCACAGAACCACACAGCCCGCTGTACCGATGATACCGGCAACCATATAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCTGTTCTTGCAGCATAAAGCGGCCAGCACggg < 1:1003350/138‑1 (MQ=255)
cACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCTGAGAGGCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACggg < 7:424490/140‑1 (MQ=255)
cACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACggg < 8:937959/140‑1 (MQ=255)
gCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGTAACGGGATGAAGTTACCCAGACGGTCTTGCAGCATAAAGCGGCCAGAAcccgt > 6:286478/1‑134 (MQ=255)
cccTGATACAGCAGGTAGCCCCACAGACCCGCACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTAcc > 2:1028633/1‑140 (MQ=255)
cccTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTAcc < 1:588566/140‑1 (MQ=255)
tGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCGTGCAGCATTAAGCTGCCAGAACGGGTACCCGc > 2:802665/1‑140 (MQ=255)
aTACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTGATGGACGGGTTGAAGTTAACCAGCAGGTGTTGCCGCATAAAGCGGCCAGCACGGGTACCCGCAt > 8:498825/1‑140 (MQ=255)
agcagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAg < 2:1082971/140‑1 (MQ=255)
agcagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTAGGTTTTTTTAAGGAACGGGATGAAGTTACCAGCCACGGCTTGCAGCATAAAACGGCCATAACGGGTAACCCCATACac > 1:418608/1‑139 (MQ=255)
cagGTAGCCCCACAGACCCACACATCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCCGGAACGGGCTGTAGTTTCCCAGCAGGTCTTGCAGCATAAAGCCGCCAGAACGGGTTCCCGCATCCcgcg > 4:281900/1‑140 (MQ=255)
cagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGCAGTTACCCCGAAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCCTCCTgcg > 4:1051500/1‑140 (MQ=255)
cagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACggg < 1:99674/125‑1 (MQ=255)
cagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTAAGGAACGGGGTGAAGTTACCCAGCAGGTATTGCAGCATAAAGCGGCCAGAACCGGTACCCGCAAcccccc > 7:536112/1‑136 (MQ=255)
cagGTAGCCCCACAGACCCACAAAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTGACGAACCGGATGAAGTTTCCCCGCAGGTCTTGCAGCATAAAGCCGGCCCAACGGGTACCCGCAACCAgcg > 3:145762/1‑140 (MQ=255)
ggTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAAGAAAGGGATGAAGTTACACAGCATGTATTTAAGCAAAAAGCGGCAAGAACGGGTACCCCCATACAGagcg > 2:571350/1‑140 (MQ=255)
ggTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTAAGGAACGGGATGAAGTTACCCAGAAGGTCTTGCAGCATAAAGCCTCCAGAACGGGTACACGCATcccacg > 5:784670/1‑134 (MQ=255)
gTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATATAGCGGCCAGAACGGGTACCCGCATCCAGCGCgg < 3:734971/140‑1 (MQ=255)
tAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGt < 8:512730/140‑1 (MQ=255)
tAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCCCCATAAAGCGGCCCGATCGGGTACCCCCATCCCGCGCggg > 2:860421/1‑139 (MQ=255)
aGCCCCCCCGACCCACACAGCCCGCAGTACCGCTGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCgg < 6:779610/138‑1 (MQ=255)
aGCCCCACAGACCCACCCAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTc < 4:546999/140‑1 (MQ=255)
aGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTc < 4:268663/140‑1 (MQ=255)
aGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTAAGGAACGGGATGAATTTACCCAGCAGGTCGTGCAGCATAAAGCGGCCAGCACGGGTACCCGCAACCCGCCCGGtg > 2:164093/1‑139 (MQ=255)
aGCCCCAAAGACACACACATCAGGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGTAACGGGATTAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTc < 3:963047/140‑1 (MQ=255)
cccACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGACCGGGTACCCGCATCCAGCGCGGGCa > 6:1026951/1‑138 (MQ=255)
aGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATG‑aa < 1:539086/140‑1 (MQ=255)
ccccacccaGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATG‑AACa < 4:467012/139‑1 (MQ=255)
aCCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGAACGGGATGATGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCCCCTCCACCGCGGTCAGGATG‑AACa > 8:642066/1‑140 (MQ=255)
ccACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTAAGGTACCGGATGAAGTTACCCAGCCGGTGTTGGAGCCAAAATCGGCCAGCACCGGTACCACCCTCCAGCGCGGGCAGGATG‑AACAGt > 1:171006/1‑140 (MQ=255)
cacacaGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATG‑AACAGTg > 4:800903/1‑140 (MQ=255)
cacaGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCCCCTCCCGCGCGGGCACGATG‑AACAGTGCt > 4:721719/1‑140 (MQ=255)
cacaGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGAAACGGATGAAGTTAACCAGCCGGTCTTTCACGATAAATCGGCCAGAACGGGTACCCGCATCCAGCGCGGTAAGGATT‑AACAGTTCt > 3:546343/1‑140 (MQ=255)
cacaGCCCGCAGTACCGATGAGACCGGCAACCAGAGCGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATG‑AACAGTGCt < 1:613438/140‑1 (MQ=255)
caGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATG‑AACAGTGCTTc < 2:1067542/140‑1 (MQ=255)
cccGCAGTACCGATGATAGCGGCACCCAGAGAGTCGGTTTTTTTCAGTAACGGGATGAATTTACCCAGCAGGTCTTGCAGCATAACGCGGCCAGAAGGGGGACCCGCATCCTGCGCGGTCAGGATG‑AACAGTGCTTCGaa < 7:329904/140‑1 (MQ=255)
cccGCAGTACCGATGATACCGTCAACCAGAGAGTCGGTTTTTTTCAGGACCGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATG‑AACAGTGCTTCg < 5:986517/138‑1 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGCGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGGCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATG‑AACAGTGCTTCg < 5:544885/138‑1 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATTAAGTTACCCAGCAGGGCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCAAACAGCGCGGTCAGGATG‑AACAGTGCGTCGaa > 4:660675/1‑140 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCCGCAGGTCTTGCAGCATAAAGCGGCCAg > 2:960341/1‑94 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATG‑AACAGTGCTTCg < 6:126711/138‑1 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATG‑AACAGTGCTTCGaa < 8:250850/140‑1 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGAACGGGATGAAGTTACCCCGCAGGTCTTGCAGCATAAAGACGCCAGCACGGGTACCCGCATCCAGCCCGGTCAGGCTG‑AACAGTGCTTCgca > 2:521287/1‑138 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGAACCGGATGAAGTTAACCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCCCAACCAGCGCGGTCAGGATG‑AACAGTGCTTCGaa > 1:896735/1‑140 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGTACGGGAGTAAGGTTCCAAGCGTGTAATGCCGCATAAAACGGCCAGAACGGGGACCAGCATCCAGCGCGGTAAGGCTGAAACAG‑GCTTCGac > 8:203851/1‑139 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCCGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATG‑AACAGTGCTTCGAACa > 2:651114/1‑140 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACg > 5:1030318/1‑96 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATG‑AACAGTGCTTCGaa > 6:344070/1‑138 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATG‑AACAGTGCTTCGAACa < 1:477456/140‑1 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATG‑AACAGTGCTTCGAACa < 8:880782/140‑1 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATG‑AACAGTGCTTCGAACa < 1:858229/140‑1 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTAAGGCACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAATCGGCCAGAACGGGTACCCGCATCCAGCGCGGGGAGGATG‑AACAGTGCTTCGaa > 6:552739/1‑138 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTAAGGCACGGGATGAAGTTAACCACCAGGGATTGCACCATAAAGCGGCCCGAACCGGTACCCCCATACCCCGCGGTCAGCTTG‑AACACTGCTTCGaa > 6:996134/1‑138 (MQ=255)
aGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCCGCGCGGTCAGGATG‑AACAGTGCTTCGCAccaaa > 8:468106/1‑136 (MQ=255)
aCCGAGTATACCGGCAACCAGAGTGTCTGTTTTTTTCAGGAACGTGTTGAAGTTACCCAGCAGCTATTGCAGAATAAAGCGGCCAGAACGGGTACCCGCATCCAGAGCGGTCAGGATT‑AACAGTGCTTCGAACAGAATAc < 7:308805/140‑1 (MQ=255)
ccGATGATACCGTCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATTAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGCGTACCCGCATCCAGCGCGGTCAGGATG‑AACAGTGCTGCGAACAGAATAcc < 8:595491/140‑1 (MQ=255)
ccGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATTAAGGTACCCAGCAGGTCTTGCAGCATATAGCGGCCAGAACGGGTACCCTCATCCAGCGCGGTCAGGATG‑AACAGTGCTTCGAACAGAATAcc < 8:310002/140‑1 (MQ=255)
ccGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATG‑AACAGTGCTTCGAACAGAATAcc < 8:388085/140‑1 (MQ=255)
ccGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATG‑AACAGTGCTTCGAACAGAATAcc < 8:711136/140‑1 (MQ=255)
gatACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATG‑AACAGTGCTTCGAACAGAATACCGAAGt < 4:738296/140‑1 (MQ=255)
atACCGGCAACCAGAGAGTCGGTTTTTTTAAGGAACGGGATGAAGTTAACCCGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTAACCGCATCCAGCGCGGTCAGGATG‑AACAGTGCTTAGAACAGAATACAGAAATg > 4:35334/1‑140 (MQ=255)
aCCGGCAACCAGAGAGTCGGTTTTTTTCATGAACGGGATGAAGTTACCCAGCAGGTCATGCAGGATAAAACGGCCACCACCGGTACCCGCATCCCCCGCGGTGAGGATG‑AAAAGTGCTGAGCACCGAATACCgcatttct > 7:162870/1‑133 (MQ=255)
aCCGGCAACCAGAGAGTCGGGTTTTTTAAGGAACGGGATTAAATTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTTCCCGCATACAGCGCGGTCAGGATG‑AACAGTGCTTAGAACAGAATACCGAAGttct > 3:637171/1‑137 (MQ=255)
cGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTTCAGCATAAAGCGGCCAGAACGGGTACCCGCCTACCTCGCGGGCAGGATG‑AACAGGTCTTCGAACAGAATACCGAAGGGATAc > 1:1042421/1‑140 (MQ=255)
caacaaGAGATTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATG‑AACAGTGCTTCGAACAGAATACCGAAGTGATAcc < 5:214501/138‑1 (MQ=255)
cAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATG‑AACAGTGCTTCGAACAGAATACCGAAGTGATAcc > 5:349857/1‑138 (MQ=255)
cAACCAGAGAGTCGGTTTTATTGAGGAACCGGAAGAAGTTACCCAGCAGGGCTTGCAGCAAAAAGCGGCCAGAACCGGTACCCGCATCCAACGCGGGCAGGTTG‑AAAAGAGCATAGCACAGAATAACTAAGTTATACCaa > 2:71152/1‑139 (MQ=255)
gTCGGTTTTTTTCAGGAACTGGATGAAGTTACCCAGCAGGTCTTGCAGCATATAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATG‑AACAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGCCCATGt < 2:898575/140‑1 (MQ=255)
tttttttCAGGAACGGGATGTAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCGAGAACGGGTACCCGCATCCAGCGCGGTCAGTATG‑AACAGTGCTTCGAACAGAATACCGAAGTGATAGCAGAAGCCCATGTCAGcc < 2:1057827/140‑1 (MQ=255)
tttttttCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATG‑AACAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGCCCATGTCAGcc < 7:656242/140‑1 (MQ=255)
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GGAAATACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATG‑AACAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGCCCATGTCAGCC > NZ_CP022686/3444576‑3444843
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
