Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F13 I0 R1
|
203 |
11425.2 |
8793538 |
98.4% |
8652841 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,444,704 |
T→G |
11.4% |
T530P (ACC→CCC) |
btsT ← |
pyruvate/proton symporter BtsT |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,444,704 | 0 | T | G | 11.4%
| 427.5
/ 15.8
| 231 | T530P (ACC→CCC) | btsT | pyruvate/proton symporter BtsT |
| Reads supporting (aligned to +/- strand): ref base T (68/131); new base G (29/2); total (97/134) |
| Fisher's exact test for biased strand distribution p-value = 1.67e-10 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 238 total aligned reads displayed.
CATCTGGTTGGAAATACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGCCCATGTCAGCC > NZ_CP022686/3444567‑3444843
|
cATCTGGTTGGAAATACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGt > 4:510593/1‑138 (MQ=255)
cATCTGGTTGGAAATACAGCACAGCGGCCACAGGCTCTTAACGCCGCCCAGAGGAAAGACAACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCACTACACATGAAAACGGCATCCAGACAGACGGt > 4:213429/1‑138 (MQ=255)
tGGGTGTAACTACCGCACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCCCGCCCTGCTCCAGCAGGTAGCCCCCCAGACCCACACACCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGttttttt < 8:604210/140‑1 (MQ=255)
gTTGGAAATACCGAACAGCAGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGCTACCGGCAACCAGAGAGTCGGTTTTTTTCa > 7:184143/1‑140 (MQ=255)
gtaaaTACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAg < 3:321434/136‑1 (MQ=255)
gAACTACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGACCGCAGTACCGATGATATCGGCAACCAGAGAGTCGGTTTTTTTCAGGaa < 6:439969/140‑1 (MQ=255)
gAAATACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCGGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTAAggcg > 5:85303/1‑138 (MQ=255)
aaTACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTTAGGGACg > 1:713088/1‑140 (MQ=255)
tACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACggg > 5:662982/1‑140 (MQ=255)
aCCGAAAAGCGGCCACAGGCTCTTAACGCCGCCCAGAGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGa < 6:347482/140‑1 (MQ=255)
agcgCGGCAACAGGCTCTTAACGCCGCCCAGCTGATCTACCACGCCCTGATACAGCTGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGGCGGTTTTTTTCTGGAACGGGATGAAg < 2:687372/137‑1 (MQ=255)
aCAGCGGCCACAGGCGCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGa < 4:1052946/138‑1 (MQ=255)
cAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGAAAGGGATGaa > 4:858981/1‑138 (MQ=255)
acaGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACCGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCcagc < 7:119950/140‑1 (MQ=255)
acaGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCcagc < 1:450629/140‑1 (MQ=255)
ctTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGCGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGAAGGGCtt > 6:520331/1‑140 (MQ=255)
ctTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCtt < 2:364321/140‑1 (MQ=255)
ttACCGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGGAGCCCCACCGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTg < 6:217184/140‑1 (MQ=255)
ttAACGCCGCCCAGCTGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTg < 1:75129/140‑1 (MQ=255)
ttAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTg < 8:387850/140‑1 (MQ=255)
ttAACGCCGCCCAGCGGAGGGACCAGGCCCTGATACATGAGGGAGCCCCACACACCCACACACCCCGCAGTACCGATGATACCGGCTACCAGTGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTg < 2:1590/140‑1 (MQ=255)
gccCAGCGGATCGCCCACGCCCTGATACAGCAGGTAGCCCCACAGAACCACACAGCCCGCAGTACCGCTGAGACCGGCAACCAGAGCGTCGGTGTTTTTAAGGAACGGGAGGAAGTTACCCCGCAGGGCTTGCCGCAGaa > 5:829223/1‑140 (MQ=255)
ccAGCGGATCGCCCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGCTACCGGCAACCAGAGAGTCGGTGTTTTTCAGGAACGGGATGTAGTTACCCAGCAGGTCTTGCAGCATaa > 4:829186/1‑138 (MQ=255)
ccAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCGTGCAGCATaaaa > 7:935788/1‑139 (MQ=255)
ccAGCGGATCGACAACGCCCTGATACAGCAGGTAGCCCCACAGACACACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTGAGGATCGGGATGAAGTTACCCAGCATGTATAGCAGCATaa > 3:265408/1‑138 (MQ=255)
gATCGACCACGCCCTTATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGc < 4:931521/138‑1 (MQ=255)
gATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCa < 6:776293/140‑1 (MQ=255)
ctCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGAACGGGATGAAGTTACCCAGCAGGTGTTGCAGCATAAAGCGGCCac > 7:813213/2‑139 (MQ=255)
tCGACCACGCCCTGATCCAGCAGGTAGCCCCACACACCCACACAGCCCGCAGTACCGATGAAACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGa < 7:968941/140‑1 (MQ=255)
gcGACCACGCCCTGATACAGCAGGTAGCCCCACAGAACCACACAGCCCCCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGCAACGGGATGAAGTTACCCAGAAGGTCTTGCAGCATAAAGCGGCCa < 3:962619/137‑1 (MQ=255)
aCCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACAGTCAACCAGAGAGTCGGTTTTTTTCATTATCGGGATGAACTTACCCAGCACGTCTTTCAGCATAAAGCCGCCAGaa > 4:1084360/1‑138 (MQ=255)
cACGCCCTGATACAGCACGTAGCCCCACAGACCCACACAGCCCGCCGGACCGCTGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCCGGTCTGGCAGCATAACGCGGCCAGAACggg < 1:306979/140‑1 (MQ=255)
cccgtaTACATCAGGTAGACCCAAAGAACCACACAGCCCGCAGTACCGATGATACCGGCAACCATAGAGTCGGTTTTTTTCATGAACGGGATGAAGTTAACCAGCAGTTCTTTCAGCATAAAGCGGCCAGAACGGGTa < 4:971515/133‑1 (MQ=255)
cccTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTa < 3:556833/138‑1 (MQ=255)
ccTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACTGGATGAAGTTACCCAGCAGGTCTTTCAGCATAAAGCGGCCAGAACGGGTAc > 4:251693/1‑138 (MQ=255)
aTACAGCAGGTAGCCCCACAGACCCACACCGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGTACGGGTTGAAGTTACCCCGCAGGGCTTGCAGCAAAAACCGGCCAGCACGGGTACCCGcct > 8:938014/1‑138 (MQ=255)
aTACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGCGTCGGTTTTTTTAAGGAACGGGATGAAGTTACCCACCATGTCTTGCAGCATAAAGCGGCCCTCACCGGGACCCGCaa > 2:759350/1‑139 (MQ=255)
cgcagGTAGCCCCACAGCCCCACACAGCCCGCAGTACCGATGATACCGGCAACCCGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAg < 8:524979/139‑1 (MQ=255)
cagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGTACGGGCTGAAGTTACCCAGCAGGTCTTGCAGCAATAAGCGGCCACAACGGGTAACCGCCTCCAgcg > 6:977861/1‑140 (MQ=255)
cagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAATTTACCCCGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCCACCAgcc > 6:29678/1‑139 (MQ=255)
cagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAg < 4:138252/138‑1 (MQ=255)
cagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTAACCCGCAGGTCTTGCGGCATAAAGCGGCCAGAACGGGTACCCGCATCCAgcg > 7:418753/1‑140 (MQ=255)
cagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCACAACGGGTACCCGCATACAccg > 2:29292/1‑140 (MQ=255)
cagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGGCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAgcg < 1:80733/140‑1 (MQ=255)
cagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACAAGAGAGTCGGTTTTTTTAAGGCTCGGGTTGAAGTTACCCAGCAGGTCGTGACGAATAAAGCGGCCAGACCGGGTACCCGCATCCcgcg > 5:538509/1‑140 (MQ=255)
cagGGAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGTTGAATTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAgcg < 5:334926/140‑1 (MQ=255)
ggTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGCACGGGCTGAAGTTCAACCGCAGGTCTGTCAGCATAAATCGGCCCGACAGGGTACCCGCATCCAgcc > 3:876265/1‑137 (MQ=255)
gTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAATTTACCCAGCAGGTGTTGCAGCATAAATCGGCCAGAACCGGTACCCGCATCCAGCGCgg > 2:1068163/1‑140 (MQ=255)
tAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGGACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCggg > 1:636919/1‑139 (MQ=255)
tAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCt < 4:424607/96‑1 (MQ=255)
tAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCt > 3:424607/1‑96 (MQ=255)
tAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGAATAAATCGGCCAGAACGGGTACCCGCATCCAGCGCGGt < 2:271040/140‑1 (MQ=255)
tAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGGTACCCAGCAGGTCTTGCCGCATAAAGCGGCCACAACGGGTACCCGCATCCCGCCCggg > 1:882821/1‑139 (MQ=255)
aGCCCCACAGACCCACACATCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCgg < 3:691653/138‑1 (MQ=255)
aGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTc < 8:912475/140‑1 (MQ=255)
aGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGCACCGGATTAAAGTACCCAGCAGGTCTTGCCGCAAAAATACGACAGCACGGGGTCCCGCATCCAGCGCGGTc > 1:473703/1‑140 (MQ=255)
aGCACCCCAGACCCACCCAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCgg < 4:272454/138‑1 (MQ=255)
ccccACAGACACACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTAACCCGCAGGTGTTGCAGCATAAAGCGGCCAGAACGGGTACCCCCATACCGCGAggac > 3:855022/1‑136 (MQ=255)
cccAGAGACCCACTCTGCCCGCAGTTCCGTTGATACCGGCACCCAGAGAGGCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAgg < 2:534390/140‑1 (MQ=255)
cccACAGCCCCACACAGCCCGCAGTACAGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAgg < 5:443019/140‑1 (MQ=255)
cacaGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAgg < 8:848564/138‑1 (MQ=255)
aGACCCACACAGCCCGCAGTCCCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATg < 4:64759/138‑1 (MQ=255)
aGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGaa < 8:407256/140‑1 (MQ=255)
gACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTGAGGAACGGGATGAAGTTACCCAGCAGGTCTTTCAGCATAAAGCGGCCCGAACGGGTACCCGCATCCCGCGCGGGCAGGGTGAAc > 1:209876/1‑140 (MQ=255)
aCCCACAGACCCAGCACTACCCTTGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGCATGAAGTTACCCTGCAGGTCTTGCAGCATAAAGCGGCCAGATCGGGTACCCGCATCCAGCGCGGTCAGGATGaa < 4:286357/138‑1 (MQ=255)
acacaGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCCTACAGCGCGGTCAGGATGAACAGt > 3:36644/1‑138 (MQ=255)
cacaGCACGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCATGTGTTGCAGAATAAATCGTCCAGAACGGGTAACCCAATCCAGAGCGCTCAGTATGAACATTgat > 8:329670/1‑138 (MQ=255)
caGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGAACGGGATGGAGTTACCCCGCCGGTCTTGGCGCATAAAGCGGCCCCCACCGGTACCCCCCAACACCGCGGGCAGGATGAACAGTGcg > 3:1110312/1‑137 (MQ=255)
aGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTAAAGAACGGGATGAAGTTACCCAGGAGGTCATGCAGGATAAAGCGGCCAGCACGGGTACCCGCATACAGCGCGGGCAGGAGGAACAGTGGTTCg > 8:878362/1‑140 (MQ=255)
cccGCAGTACCGATGATACCTGCAAACAGAGAGTCGGTTTTTTTCAGGAACGGGATTAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGaa < 5:160375/140‑1 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGTTGAAGTTACCCAGCAGGTCTTGCAGCAAAAAGCGGCCACAACGGGTACCCCCATCCAGCGCGGTCAGGATGAAAATTGCTTAGaa > 2:1054464/1‑140 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGaa < 6:614927/140‑1 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGaa < 7:745945/140‑1 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGAACCGGATGAAGTTCCCCAGCAGGTCTTGCAGCATAAAGCGGCCAGACCGGGTACCCCCATCCCGCGCGGGCAGGATTCACAGTGCTGCGaa > 1:502747/1‑140 (MQ=255)
ctcAGTACCGTTGATACCTGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTTCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACa < 2:476687/138‑1 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTTCCCAGCAGGTCTTGCAGCATAAAGCGGCCCGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACa > 5:122767/1‑140 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGaa < 4:87537/138‑1 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACa < 6:680703/140‑1 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACa < 1:1084922/140‑1 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTGAGGAACGGGATGAAGTTAACCCGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCCTCCCGCGCGGGCACGATGAACAGTGCGTCGAACa > 5:18954/1‑140 (MQ=255)
cAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGATACCCCCCACGTCATGCAGCATAAAGCGGCCAGCACGGGTAACCGCATCCAGCGCCGGAAGGATGAACAGTGCTTAGacaaga > 2:828324/1‑135 (MQ=255)
aGTACCTATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAg < 3:207934/138‑1 (MQ=255)
ccGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATAcc < 6:801755/140‑1 (MQ=255)
atgatACCGGCAACCAGAGAGTCGGTTTTTTTGAGGAACGGGATGAAGGTACCCAGCACGTCGTGCAGCATAAAGCGGCCAGAACGGGTTCCCCCATCCAGCGCGGGCAGCATGAACACTGCTTAGAACATAATAACGaa > 5:270029/1‑140 (MQ=255)
atgatACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGTCCAGCACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCg < 4:671110/138‑1 (MQ=255)
atgatACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACgg < 1:420193/87‑1 (MQ=255)
atgatACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGGCAGGATGAACAGTGCTTCGAACAGAATACCGaa < 2:297920/140‑1 (MQ=255)
atgatACCGGCAACCAGAGAGTCGGGTTTTTTCAGGAACGGGATGAAGTTTCCCAGCAGGTCTTGCCGCATAAAGCGGCCAGAAAGGGTACCCGCATCCCGCGCGGTCAGGAAGAACAGTTCTTCGCAACGAATACCGaa > 8:793699/1‑140 (MQ=255)
atgaaACCGGCAACCAGAGAGTCTGTTTTTTTCATGATCGGGATGAAGTTACCCACCAGGCCTTGCAGCATAAAGCGGCCATAACGGGTACCCGCATCCAGCGCGGTCAGGATTAACAGTGCTTCGAACAGAATACCGaa < 5:71153/140‑1 (MQ=255)
atACCGGCAACCAGAGAGTCGGTTTTTTTCATGAACGGGATGAAGTTAACCACCAGGGCTTGCAGCATAAAGAGGCCCGAAAGGGTTCCCGCATCCAGCTCGGGCAGGATGAACAGTTCTTGGCACAGAATACCGAAGtt > 6:569704/1‑139 (MQ=255)
aaCCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAACGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGa < 6:88677/139‑1 (MQ=255)
aCCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGa > 2:86277/1‑38 (MQ=255)
aCCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCTGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGAt < 1:1036800/140‑1 (MQ=255)
aCCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACa > 2:34683/1‑125 (MQ=255)
aCCGGCAACCAGAGAGTCGGTTTTTTTCAGGAAAGGGATGAAGTTAACCAACAGGGATTTCAGCAAAAAGCGGCCATAACGGGTTCCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTAGAACAGAATACCGAAGTGAt > 2:947463/1‑140 (MQ=255)
aCCGGCAACCAGAGAGTCGGGTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACACTGCTTCGAACAGAATAACGAAGTGaa > 5:977155/1‑139 (MQ=255)
aCCGGCAACCAGAGAGTCGGGTTTTTTCAGGAAACGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATACAGCGCGGTCCGGATGAACACTGCTTCGAACAGAATACCGAAGGGAt > 2:706426/1‑140 (MQ=255)
cGGCAACCAGAGAGTCGGTTTTTTTCAGGAACCGGATGAAGTTACCCCGCAGGTCTTGCAGCATAAAGCCGCCAGAACGGGTACCCGCATCCAGCGCGGTCACGATTAACAGTGCGTCGCACAGAATACCGCAGTGATaa > 6:133815/1‑139 (MQ=255)
gCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCa < 1:382808/140‑1 (MQ=255)
cAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGc < 5:105508/140‑1 (MQ=255)
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CATCTGGTTGGAAATACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGCCCATGTCAGCC > NZ_CP022686/3444567‑3444843
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
