Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F35 I0 R1
|
304 |
9232.4 |
10623078 |
98.3% |
10442485 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,444,704 |
T→G |
16.2% |
T530P (ACC→CCC) |
btsT ← |
pyruvate/proton symporter BtsT |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,444,704 | 0 | T | G | 16.2%
| 377.9
/ 23.9
| 232 | T530P (ACC→CCC) | btsT | pyruvate/proton symporter BtsT |
| Reads supporting (aligned to +/- strand): ref base T (73/116); new base G (40/3); total (113/119) |
| Fisher's exact test for biased strand distribution p-value = 2.01e-11 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 234 total aligned reads displayed.
CTGGTTGGAAATACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGCCCATGTC > NZ_CP022686/3444570‑3444839
|
ggTTGGAAATACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTc < 5:708481/140‑1 (MQ=255)
ggAAATACCGAACAGCGGCCACAGGCTCTTAACGCCGACCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAg < 3:766955/138‑1 (MQ=255)
gAAATACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGCCCCACACAGCCCGCAGTACCGAGGATACCGGCACCCAGAGAGGCGGGGTTTTTGAGGaa > 7:70252/1‑140 (MQ=37)
aaaTACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACCCAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGagc > 7:1222062/1‑138 (MQ=255)
aCCGACCCGCGGACACAGGCTCTTAACGCCGCCCACCGTATCGACAACGCCCTGATACAGCAGGTAGACCCACAGACCCTCACAGCCCGCAGTACCGATGCTAACGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGa < 5:482243/140‑1 (MQ=255)
aCCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGa < 2:626489/140‑1 (MQ=255)
gAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGa < 2:1170567/140‑1 (MQ=255)
aaCAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGGACGGGATGaa > 1:1135914/1‑140 (MQ=255)
gCGGCCACAGGCTCGTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACCGCCAGCAGTACCGATGATACCGGCACCCAGAGAGTCGGGTTTTTTCAGGCCCGGGGTGatct > 4:305709/1‑135 (MQ=37)
cGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGCCCCACACAGCCCGCAGTACCGATGATACCCGCCACCAGAGAGTCGGGTTGTTTCATGGACGGGTTGAAGTTaa > 5:239814/1‑139 (MQ=38)
gCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTAccc > 6:516552/1‑140 (MQ=255)
gCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGGTTTTTAAGGAACGGGATGAAGTTaa > 3:445062/1‑137 (MQ=255)
acaGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCcagc < 5:500279/140‑1 (MQ=255)
acaGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCcagc < 6:1232857/140‑1 (MQ=255)
ggCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAgg < 1:128253/140‑1 (MQ=255)
ggCTCTAAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAgg < 7:840785/140‑1 (MQ=255)
ttAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACTGACCCTCACAGCCCGCAGTACCGATGATCCCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTg < 6:956854/140‑1 (MQ=255)
ttAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTg < 2:360580/140‑1 (MQ=255)
ttAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGGAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTg < 6:1045930/140‑1 (MQ=255)
cgccCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTGAGGAACGGGATGAAGTTACCCAGCAGGTGTTGCCGCAtt > 1:955519/1‑139 (MQ=255)
gccCAGCGGATCGCCCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGAACCCGATGAAGTTAACCCGCAGGTAGTTCCGCATaa > 1:1001807/1‑140 (MQ=255)
gccCAGCGGATCGACCACGCCCTGATCCAGCAGGTAGCCCCCCAGACCCCCACAGCCCGCAGTACCGATGATACCGGCACCCAGCGATTCGGTATTGTTGAGGAACGGGCTGAAGTTACCCAGCAGGGCTTGCAGCAGaa > 8:924652/1‑140 (MQ=255)
gccCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCCCAGACCCCCACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTGAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCCGCAtta > 8:729524/1‑138 (MQ=255)
gccCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCCCACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAAGAAAGGGAAGAATATACCCAACACGGCATGCAGCaaaa > 1:409481/1‑140 (MQ=37)
gccCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCACACAGCCCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTTAGGAACAGGATGAATTTTACCAACAGGTCTTGCAGCATaa > 1:543478/1‑140 (MQ=255)
ccAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACgg > 3:106621/1‑106 (MQ=255)
cAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATaaa > 3:365271/1‑138 (MQ=255)
cgCGGATCGACCCCGCCCTGATACTGCAGGTCGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCg < 5:337890/139‑1 (MQ=255)
cgtagcGACCACGCCCTGATACAGCAGGGAGCCCCACAGACCCACACAGCCCGCTGTTCCGATGATACCTGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCg < 3:866703/133‑1 (MQ=255)
cGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGc < 7:341198/140‑1 (MQ=255)
tCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGa < 8:517936/140‑1 (MQ=255)
cGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCCGCAGGTCTTGCAGCATAAAGCGGCCAGaa > 6:451243/1‑140 (MQ=255)
cccGCCCTGATACAGCAGGTAGCCCCACCTCCCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTGCAGGAACGGTATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACggg < 7:407461/138‑1 (MQ=255)
agcagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTAAGGAACGGGTTGAAGTTTCCCAGCAGGTCTTGGAGCATAAAGCGGCCAGAACGGGTTCCCCCCTcccc > 6:64498/1‑138 (MQ=255)
agcagGGAGCCCCACAGACCCACACAGCCCGCAGTAACGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCTTGAACGGGTTGAACTTTCCCAGCACGACTTTGAGCATAAACAGGCCAGAACGGGTACCCGCATCCAg > 8:211718/1‑140 (MQ=255)
cagGTAGCCCCACAGCCCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGCACGGGGTGAAGTTACCCAGCAGGGGTTGGCGCATAAAGCGGCCAGAACGGGTAACCCGATcccccg > 5:86191/1‑136 (MQ=255)
cagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCCCATACcgcg > 6:898203/1‑140 (MQ=255)
cagGGAGCCCCACCGCCCCCCACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGGACGGGGTGAAGTTTCCCAGCAGGGCTTGCAGGCTAAAGCGGGCAGAACAGGTACCCGCaaaccgcc > 6:1190341/1‑133 (MQ=255)
ggTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACGGGCAACCACAGAGTCGGGTATTTTCATGAACGGGTTTAAGGTACCCCGGATGGCTTGCAGCAGAAACCTGCCATCAACGGTACCCGAATGCAgcg > 4:51697/1‑138 (MQ=255)
ggTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGGCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGcgcg > 6:658652/1‑140 (MQ=255)
ggTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGAACGGGATGAAGTTACCCCGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGcgcg > 8:479699/1‑140 (MQ=255)
ggTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGCAAGGGATGAAGTTACCCATCAGGTCATTCAGCAATAATCGGCCACAACGGGTACCCGCATCCcgcgcg > 5:364020/1‑140 (MQ=255)
aGCCCCACAGACCCACACAGCCCGCTGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCgg < 4:264824/138‑1 (MQ=255)
aGCCCCACAGACCCACACAGCCCGCAGTACCTATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTc < 6:294216/140‑1 (MQ=255)
aGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTc < 1:389118/140‑1 (MQ=255)
aGCCCCACAGACCCACACAGCCCGCAGTACCGATGAAACCGGCAACCAGAGAGTCGGGTTTTTTCAGGAACGGGAGGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTc < 1:655292/140‑1 (MQ=255)
cccACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCa < 3:337108/138‑1 (MQ=255)
caGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGa > 5:569585/1‑140 (MQ=255)
caGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGAACGGGATGAAGTTAACCAGCAGGTCTTGCAGCATAAAGCGGACAGAAAGGGTACCCGCATCCCGAGCGGGAAGGAttg > 2:313256/1‑138 (MQ=255)
caGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGAACGGGATGAATGTACCCAGCAGGGCTTGAAGCATAAAGCGGCCAGAACGGGTACCCCCATCCCGCGCGGGCAGGAt > 4:548929/1‑138 (MQ=255)
aGACCCACACCGCTCGCATTACCGATGATACCGGCAACGAGTGAGTCGGTTTTTTTCAGGAACGTGATGAAGTTACCCAGCAGTTCTTGCAGCATAAAGCGGCCAGAACGGGTACCGGCATCCAGCGCGGTCAGTATGaa < 5:1279048/140‑1 (MQ=255)
gACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGTACGGGATGAAGTTACCCAGCAGGGCTTGCAGCATAAAGCGGGCCGCACGGGTACCCGCCTCCCGCGCGGGCAGGATGa > 3:585019/1‑138 (MQ=255)
aCCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGaa < 4:951063/138‑1 (MQ=255)
aCCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAACAGGTCTTGCAGCAAAAAGCGGCCAGAACGGGTACCAGCCACCAGCGCGGTGAGGATGAACa > 6:333542/1‑140 (MQ=255)
acacaGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGc > 2:105509/1‑140 (MQ=255)
acacaGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTAAGGGACGGGTTGAAGTTACCCAGCAGGTCGTGCAGCATAAAGCGGCCAGAACGGGTACCCCCAACCAGCGCGGTCAGGATGAACAGt > 4:1297731/1‑138 (MQ=255)
cacaGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCt < 7:1059593/140‑1 (MQ=255)
acaGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCCCATCCAGCGCGGTCAGGATGAACAGTGc > 4:1072770/1‑138 (MQ=255)
cccGCAGTACCGATGATCCCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGaa < 7:373959/140‑1 (MQ=255)
cccGCAGTACCGATGATACCTGCATCCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACACGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGaa < 7:582154/140‑1 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGTAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCg < 3:986371/138‑1 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCg < 4:1054703/138‑1 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGaa < 7:1003597/140‑1 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGAAGAAGTTAACCCGCAGGTCTTGCAGCATAAAGCGGGCAGAACGGGTACCCGCATCCAGCGCGGTCAGGTTGAACAGGGCTTCGaa > 1:708412/1‑140 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATTCACAGTGCTTGGaa > 2:929057/1‑140 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGCACGGGATGAAGTTACCCCGCAGGTCTTGCAGCACAAAGCGGCCAGCACCGGTACCCCCATACCGCGCCGTCAGGAAGCACAGTGCTTCgca > 2:621625/1‑138 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTAAGGAACGGGATGAAGTTAACCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGGACCCGCATCCAACGCGGGACGGATGAACAGTGCGTCGaa > 7:180469/1‑140 (MQ=255)
cGCAGTACCTATGATACCGGCAACCAGAGTGGCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACa < 8:1098249/140‑1 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGCAAGGGATGCAGTTACCCAGCAGGGGTTTCAGCATAAAGCGGACAGAACGGGTTCCCCCAGCAAGCGCGGTCAGGATGCACAGTGCTTCGaa > 3:542983/1‑138 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGGTGAAGTTACCCAGCAGGTCTTGCAGCATTAATCGGCCCGAACGGGTAACCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACa > 8:879065/1‑140 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGaa < 3:851264/138‑1 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGaa < 4:1290179/138‑1 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACa < 1:821718/140‑1 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACa < 5:1248094/140‑1 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCCCCTCCCGCGCGGTCAGGATGAACAGTGCTTCGaa > 4:425570/1‑138 (MQ=255)
cAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATTAATTTACCCAGCATGTATTGCCGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGa > 2:777506/1‑140 (MQ=255)
tACCGATGATACCGTCAACCAGAGAGTCGGTTTTTTGCAGGAACGTGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATa < 8:466976/140‑1 (MQ=255)
tACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGTTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGaa < 4:767450/138‑1 (MQ=255)
cgctgatACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCGGAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCg < 8:1255371/137‑1 (MQ=255)
cGATGATACGGGCAAACAGAGAGTAGTTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATAc < 4:749835/138‑1 (MQ=255)
gatgatACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATAcc < 3:1332623/138‑1 (MQ=255)
atgatACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTc < 6:305842/108‑1 (MQ=255)
atgatACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGaa < 1:173481/140‑1 (MQ=255)
atgatACCGGCAACCAGAGAGTCGGTTTTTTTAAGGCACGGGATGAAGTTAACCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCAACCAGCGCGGTCAGGATGAACAGTGCGTCGAACAGAATACCGaa > 5:325984/1‑140 (MQ=255)
gatACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACCGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAACCGCCAGAACGGGTACCCGCAAACAGCGCGGTCATGAAGAACAGTGCTTAGAAACGAATACCCaa > 3:116118/1‑138 (MQ=255)
aCCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATAcc < 6:737435/132‑1 (MQ=255)
aCCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATAcc > 5:737435/1‑132 (MQ=255)
aCCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGAt < 8:1048868/140‑1 (MQ=255)
aCCGGCAACCAGAGAGTCGGTTTTTTTAAGGAACGGGATGAAGTTACCCACCAGGGCTTGCAGCAAAAAGCGGCCAGAACGGGTAACCGCATACATCGCGGTCAGGATGAACAGTGCTTAGAACAGAATACCGAAGTGAt > 8:663908/1‑140 (MQ=255)
aCCGGCAACCAGAGAGTCGGGTTTTTTAAGGTACGGGATGAAGTTAACCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACCGGTACCCGCATCCCGCTCGGGAAGTATTAACAGTGCTTCGAACAGAATAACGAAgatat > 8:27218/1‑136 (MQ=255)
aCCGGCAACCAGAGAGTCGGGTTTTTTAAGGAACGGGATGAAGTTTCCCAGCAGGTCTTGCAGCATAAATCGGCCAGAACGGGTACCAGCATACAGCGCGGGCAGGATGAACAGTGCTTCTAACAGAATAACGAAGTGAt > 2:201469/1‑140 (MQ=255)
cGGCAACCAGAGAGTCGGGTTTTTTCCGGAACGGGGTGAAGTTACCCAGCATGTCTTGCAGCATAAAGCGGCCACCACGGGTTCCCGCATCCCGCGCGGTCAGGCTTAACAGTGCTTCGAAAAGAATACCGAAGGGATAc > 2:111981/1‑140 (MQ=255)
gCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCa < 1:999271/140‑1 (MQ=255)
gCAACCAGAGAGTCGGGTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGAAGAACAGTGCTTCGAACAGAATACCGAAGTGATAc > 4:1252455/1‑138 (MQ=255)
cAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTATCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATAcc < 3:273893/138‑1 (MQ=255)
aCCAGAGAGTCGGGTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCAg > 3:1250453/1‑138 (MQ=255)
cccgatagTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCAGa < 4:349150/132‑1 (MQ=255)
gTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGCCCAt < 4:912737/138‑1 (MQ=255)
gTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGCCCATGt < 2:897626/140‑1 (MQ=255)
ggTTTTTTTCAGGAACGGGATGACGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGCCCATGTc < 4:928097/138‑1 (MQ=255)
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CTGGTTGGAAATACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGCCCATGTC > NZ_CP022686/3444570‑3444839
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
