Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F36 I0 R1
|
107 |
8366.7 |
6299831 |
98.3% |
6192733 |
135.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,444,704 |
T→G |
17.4% |
T530P (ACC→CCC) |
btsT ← |
pyruvate/proton symporter BtsT |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,444,704 | 0 | T | G | 17.4%
| 315.8
/ 15.7
| 185 | T530P (ACC→CCC) | btsT | pyruvate/proton symporter BtsT |
| Reads supporting (aligned to +/- strand): ref base T (56/91); new base G (35/2); total (91/94) |
| Fisher's exact test for biased strand distribution p-value = 9.44e-11 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 190 total aligned reads displayed.
TGGAAATACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGCCCATGTCAGCC > NZ_CP022686/3444575‑3444843
|
gAAATACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAgg < 3:232290/138‑1 (MQ=255)
gAAATACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGaa < 5:555872/140‑1 (MQ=255)
cccGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGa < 6:290163/139‑1 (MQ=255)
gAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGCTCGACCCCGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCACCCAGAGAGTCGGTGTTTTGGAGGCTCGGGAt > 4:35148/1‑138 (MQ=255)
gAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGCCCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGAt > 2:671103/1‑138 (MQ=255)
gAACAGCGGCCACAGGCGCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGAt < 2:504422/138‑1 (MQ=255)
aCAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGCACGGGATGAAg > 5:675135/1‑140 (MQ=255)
gCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGCTACAGCAGGTAGCCCAACAGACCCACCCAGCCCGCAGTACCGATGATACCGGCAACAAGAGAGTCGGTTTTTTTAAGGAAAGGTATTaatt > 4:476924/1‑136 (MQ=38)
cGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTAc > 6:70616/1‑140 (MQ=255)
cacaGGCTCTTAACGCCCCCCTGCGGATCGCCCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACTCAGCCCGCAGTACCGATGATACCGGCAACCAGAGATGCGGGTTGTTTCAGGTACGTGATGAAGGTAccc > 1:753779/1‑138 (MQ=255)
ggCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCcagca < 2:294689/138‑1 (MQ=255)
ttAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGTCCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTg < 8:135293/140‑1 (MQ=255)
ttAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCt < 2:416139/138‑1 (MQ=255)
tAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGGTGAAGTTACCCAGCAGGTCtt > 4:566698/1‑138 (MQ=255)
ccgccCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGCCCCACACCGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTAAGGAACGGGATGAAGTTAACCCGCAGGTCTTgcagcct > 6:109790/1‑138 (MQ=38)
gccCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCCCACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAAAGGGATGAAGTTTCCCAGCAGGTCTTGCAGCCTaa > 6:730169/1‑140 (MQ=255)
gccCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATAACGGCAACCAGAGAGTCGGTTTTTTTAACGCACGGGATGAAGTTACCCAGCAGGTGGTGCAGCaaaa > 8:9132/1‑140 (MQ=39)
cccAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGTACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATa > 3:497394/1‑138 (MQ=255)
cccAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTAAGGAACGGGATGCAGTTAACCAGCAGGTCTTGCAGGATa > 1:378167/1‑138 (MQ=39)
ccAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCATCAGGTCTTGCAGCATaa > 4:685331/1‑138 (MQ=255)
cGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGc < 6:54478/140‑1 (MQ=255)
tCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCCCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGa < 6:513627/140‑1 (MQ=255)
cGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGt < 3:632336/105‑1 (MQ=255)
cGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCCGCAGGACTTGCAGCATAAAGCGGCCGGaa > 5:271560/1‑140 (MQ=255)
gACCACGCCCTGCAACCTGAGGTACCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCTGCAACCAGAGAGTCGGAATTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAAc < 6:213811/140‑1 (MQ=255)
aCCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACg > 5:764428/1‑140 (MQ=255)
ctcGCCCTGATACAGCAGGTAGCCCCCCAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACggg < 5:532671/138‑1 (MQ=255)
cACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGaaag < 4:201635/138‑3 (MQ=255)
cACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACg < 3:684981/138‑1 (MQ=255)
cACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTTCAGCATAAAGCGGCCAGAACg > 4:788001/1‑138 (MQ=255)
cACGCCCTGATACAGCAGGAAGCCCCACAGACCCACACAGCACGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACg < 1:124278/138‑1 (MQ=255)
cACCCCCTGATACCGACGGGAGCCCCACAGCCCCACACAGCCCGCAGTCCCGAAGATACCGGCAACCAGAGAGTCGGTTTTCTTCAGGAACGGGACGAAGTTACCCAGCAGGTCTTGCAGCCTAAAGCGGCCAGAACggg < 8:223885/140‑1 (MQ=255)
cccTGATACAGGAGGTAGCCCCACAGCCCCACACAGCCCGCAGTACCGATGATACCGGAAACCAGAGAGTCGGTTTTTTTCAGGAACGGTATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTAcc < 5:539898/140‑1 (MQ=255)
cccTGATACAGCAGGTAGCCCCACATCCCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTa < 4:146076/138‑1 (MQ=255)
cccTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCTATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTa < 1:680183/138‑1 (MQ=255)
cccTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTAcc < 7:416810/140‑1 (MQ=255)
catgTATCCCCACATACCCAAACACCCCCCATTTCCGATGCTACAGGCAACCCGTGAGTCGGTTTTTTTCCGGAACGGGAGGTAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCAGCATCCAg < 2:130255/135‑1 (MQ=255)
cagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCACCCAGAGAGTCGGGTTTTTTCAGGAACGTGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGAGGCCAGAACGGGTACCCGCATCCAgcg < 5:444056/140‑1 (MQ=255)
cagGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATCATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGAACCGGATGAAGTTAACCAGCACGGCTTGCACCAAAAAGCGGCCAGCACGGGTTCCCCCATCCAgcc > 7:258736/1‑139 (MQ=255)
ggTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTGAGGACCGGGTTGAAGTTACCCAGCAGGTGTTGCCGCATAAAGCGGCCCGCACGGGTACCCGCCTCCAgcg > 2:159115/1‑138 (MQ=255)
ggTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTGAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAgcg > 3:603793/1‑138 (MQ=255)
ggTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGAACGGGATGAAGTTACCCCGCAGGGCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCcgcgcg > 6:760254/1‑140 (MQ=255)
ggTAGCCCCACAGACCCACACAGCCCACAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCca < 1:23954/90‑1 (MQ=255)
ggTAGCCCCACAGACCCACACAGCCCACAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCca > 2:23954/1‑90 (MQ=255)
tAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCACAACGGGTACCCGCCACCCGCGCggg > 6:640887/1‑139 (MQ=255)
tAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGAACCGGAAGAAGTTACCCCGCAGGTCATGCCGCAAAAAGCGGGCCGCACGGGTACCCGCCTACAGCGCggg > 7:451669/1‑139 (MQ=255)
cgCCCCACAGACCCACACAGCCCGCATGAACGATGATACCTGCAACGAGAGAGTCGGGTTTTTTCTGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCTTAAAGCGGCCAGAACGGTTACCCGCATCCAGCGCgg < 1:111678/137‑1 (MQ=255)
cgCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCCGAGAGTGGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCgggc < 8:701437/139‑3 (MQ=255)
aGCCCCCCAGACCCACTCAGCCCGCTGTACCTATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGGAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTc < 7:385788/140‑1 (MQ=255)
aGCCCCACAGACCCACACAGCCCGCAGTACCGATGCTACCGGCAACCAGAGAGTCGGTTTTTTTAAGGAACCGGATGAAGTTACCCAGCAGGTCTTGCCGCAAAATCCGGCCACAAAGGGTACCCGCATCCCGCGCGGTc > 5:17005/1‑140 (MQ=255)
aGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTc < 5:70616/140‑1 (MQ=255)
aGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTAGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGTCCAGAACGGGTACCCGCATCCAGCGCgg < 2:109337/138‑1 (MQ=255)
gCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGCACGGGTACCCGCATCCAGCGCggg > 3:395955/1‑137 (MQ=255)
ccccACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCCGCATAAAGCGGCCAGAACGGGTACCCCCCTCCCGCGCGGTCAg > 8:509191/1‑140 (MQ=255)
cccACAGACCCACAACGCCCGAAGTACCGATGATACCGGAAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCa < 4:526962/138‑1 (MQ=255)
cacaGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTAAGGAACGGGCTGAAGTTACCCACCAGGGCGGTCCGCATAAAGCGGCCCCCACGGGTACCCGCCTACCGCGCGGTCAGGAt > 8:655096/1‑140 (MQ=255)
acaCCCACACAGCCCGCAGCACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGATACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGaa < 6:669197/138‑1 (MQ=255)
ccACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACa < 1:637399/138‑1 (MQ=255)
cacacaGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTGAGGAACGGGATGAAGTTACCCAGCAGGGCGTGCAGCCTAAAACGGCCAGCAACGGTACCCGCATCCAGCGCGGGCAGGATGAACAggg > 7:585577/1‑138 (MQ=255)
cacaGCCCGCAGTACCGATGATCCCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTg < 4:608833/138‑1 (MQ=255)
cacaGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTGAGGCACGGGATTAAGGTCCCCAGCCGGGCTTGCCGCATAAAGCGGCCCGCACGGGTCCCCCCATCCCGCGCGGGCAGGGAGAACCGGGCt > 6:207402/1‑140 (MQ=255)
cacaGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTCAGGGACGGGATGAATTTACCCAGCAGGGCTTGCAGCATAAATCGGCCAGAACGGGGACCCGCATCCCGCGCGGTCAGGATGCAccattct > 6:341922/1‑134 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCATGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCg < 4:299352/138‑1 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGTAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCg < 1:533053/138‑1 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGGACGGGATGAAGTTAACCCGCAGGTCTTGCCGCAAAAAGCCGCCAGAACGGGGACCCGCCTCCAGCGCGGTCAGGAAGAACAGTGCATCGaa > 8:340033/1‑140 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCg < 3:7865/138‑1 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCg < 3:267816/138‑1 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGaa < 5:636214/140‑1 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGaa < 5:734992/140‑1 (MQ=255)
cccGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGaa < 7:336333/140‑1 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCCGCAGGTCTTGCAGCAAAAACCGGCCAGAACGGGTACCCGCCTCCAGCGCGGTCAGGATGAACAGTGCTTCGaa > 1:425163/1‑138 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCGGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACa < 5:241898/140‑1 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCCGAACGGGTACCCGCCTCCAGCGCGGGCAGGATGAACAGTGCTTCGac > 2:87791/1‑137 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGaa < 4:43718/138‑1 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGCACGGGATTAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACCGGTACCCCCAACCAGCGCGGTCAAGATTAAAAGTGCATCGaa > 1:181103/1‑138 (MQ=255)
cGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGAACGGGATGAATTTACCCAGCAGGACTTTCAGCATAAAGCGGCCACAACGGGTACCCCCATCCAGCGCGGTCAGGATGAACAGTGCTTCGaa > 1:788704/1‑138 (MQ=255)
cAGTACCGATGATACCGGCAACCAGAGAGTCGGGTTTTTTAAGGAACGGGATGAATTTTACCAGCAGGTCTTGCCGCATAAAGCGGCCCGAACCGGTACCCCCAACCAGCGAGGTCAGGATGAACAGTGCTTCGAACAGa > 7:653317/1‑140 (MQ=255)
gTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCg > 1:319813/1‑132 (MQ=255)
gTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCg < 2:319813/132‑1 (MQ=255)
gTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAATGCAAGCGATGAAGTTAACCAGCAGGTATTGCAGCATAAATAGGCCAGAACGGGTACCCGCCAACAGCGCGGGCAGGATGAACAAGGCTTCGAACaaa > 3:158848/1‑136 (MQ=255)
cGATGATACCGGCAACCAGAGAGTCGGTTTTTTTAAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGAGGCCAGAACGGGTACCCGCATCCAGCGCGGGCAGGATGAACAGTGCTTCGAACAGAATAACg > 8:151037/1‑140 (MQ=255)
cGATGATACCGGCAACCAGAGAGTCGGGTTTTTTAAGGAACGGGATGAAGTTACCCATCAGGTCTTGCAGCATAAATCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCCAACAGAAAACCg > 5:394428/1‑140 (MQ=255)
atgatACCGGCAACCAGAGAGTCGGTTTTTTTGAGGAACGGGATGCAGTTAACCAGCAGGTCTTGCAGGCTAAAGCGGCCAGAACGGGTACACGCATCCAGCGGGGGGAGGCTGAACAGTGAGTGGCACAGTATAACGaa > 8:276019/1‑140 (MQ=255)
atgatACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGTATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGaa < 7:655096/140‑1 (MQ=255)
atgatACCGGCAACCAGAGAGTCGGTTTTTTGCAGGAACGGGATGTAGTTACCCACCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCg < 2:320374/138‑1 (MQ=255)
atgatACCGGCAACCAGAGAGTCGGGTTTTTTCAGGAACGGGATGAAGTTAACCCGCAGGTCTTGCCGCATAAAGCGGCCAGAACGGGTACCCCCCTCCAACGCGGGGAGGATGAACAGTGCTTCGAACAGAATACCgca > 6:352427/1‑138 (MQ=255)
gatACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGAGGAAGTTTACAAGCAGGTCTTGCAGCATAAAGCGGCCACAAAGGGTACCCGCATCCAGCGCGGTCAGCATGAACAGTTCTTCGAACAGAATACAGaa > 3:469341/1‑138 (MQ=255)
gatACCGGCAACCAGAGAGTCGGGTTTTTTCAGGGACGGGATGAAGTTACCCAGCAGGTCTTGCCGCATAAAGCGGCCCGAACGGGTACCCGCATCCCGCGCGGTCAGGTTGAACAGTGCTTCGAACAGAATACCGaa > 4:120578/1‑138 (MQ=255)
tcccGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCGAGCAGGTCTTGCAGCATAAAGCGGCCAGAACTGGTACCCGCATCCAGCGCGGTCAGGATTAACTGGGCTTCGATCAGAATACCGAAGt < 2:794633/136‑1 (MQ=255)
tACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGt < 1:158630/138‑1 (MQ=255)
tACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGa > 8:151304/1‑140 (MQ=255)
aCCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGAGGCCCGAACGGGTACCCGCATCCAGCGCGGACAGGATGAACCGTGCTTCGCACAGAATACCGAAGTg > 4:78066/1‑138 (MQ=255)
aCCGGCAACCAGAGAGTCGGGTTTTTTCAGGAACGGGTTGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATACAGCGCGGTCAGGATGAACACTGCTTCGAACAGAATACCCAAGTGAt > 7:13943/1‑140 (MQ=255)
cGGCACCCAGAGAGTCGGTTTTTTTCAGGGACGGGATGAAGTTACCCAGCAGGTCGTGCAGCATAAAGCGGCCCGAACGGGTACCCGCCTCCCGCGCGGTCAGGATGAACAGGGCTTCGCCCAGAAGACCGACGTGag > 4:443212/1‑137 (MQ=255)
cGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCCGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCCCAACCAGCGCGGGCAGGATGCACAGTGCTTCGAACAGACTTACGAAATGAt > 2:210663/1‑138 (MQ=255)
ggCAACCAGCGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATAcc < 8:323434/140‑1 (MQ=255)
cAGAGAGTCGGTTTTGTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGc < 6:295987/140‑1 (MQ=255)
gTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGCCCATGt < 7:162042/140‑1 (MQ=255)
tttttttCAGGATCGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGCCCATGTCAg < 1:110613/138‑1 (MQ=255)
tttttttCAGGAACGGTATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGCCCATGTCAg < 4:329635/138‑1 (MQ=255)
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TGGAAATACCGAACAGCGGCCACAGGCTCTTAACGCCGCCCAGCGGATCGACCACGCCCTGATACAGCAGGTAGCCCCACAGACCCACACAGCCCGCAGTACCGATGATACCGGCAACCAGAGAGTCGGTTTTTTTCAGGAACGGGATGAAGTTACCCAGCAGGTCTTGCAGCATAAAGCGGCCAGAACGGGTACCCGCATCCAGCGCGGTCAGGATGAACAGTGCTTCGAACAGAATACCGAAGTGATACCAGAAGCCCATGTCAGCC > NZ_CP022686/3444575‑3444843
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
