Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F13 I0 R1
|
150 |
9496.0 |
7621532 |
98.4% |
7499587 |
136.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,868,753 |
T→G |
18.3% |
T18P (ACC→CCC) |
fdoH ← |
formate dehydrogenase O subunit beta |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,868,753 | 0 | T | G | 18.3%
| 251.3
/ 23.7
| 159 | T18P (ACC→CCC) | fdoH | formate dehydrogenase O subunit beta |
| Reads supporting (aligned to +/- strand): ref base T (12/115); new base G (28/4); total (40/119) |
| Fisher's exact test for biased strand distribution p-value = 1.21e-17 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 170 total aligned reads displayed.
CAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCTGCGTGTTCGCATCACCGACGAATGGCGTC > NZ_CP022686/2868615‑2868892
|
cAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGtg > 3:67551/1‑139 (MQ=255)
cAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCGGCGGGGC‑GGGGGtg > 3:704977/1‑139 (MQ=255)
cAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCGGAGGCGC‑GGGGGtg > 6:807675/1‑139 (MQ=255)
cAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCCGGGGGGC‑GGGGGtg > 6:495193/1‑139 (MQ=255)
cAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCCCGCCTGAGGCGC‑GGGGGtg > 3:624398/1‑139 (MQ=255)
aaTGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTGCCCCGCCTGAGGCGC‑GGGGGtgg > 2:77361/1‑138 (MQ=255)
tGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGTCCC‑GGGGGTCaag > 7:49811/1‑138 (MQ=255)
ttGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCCCCTGACAGGCTTTACAGACGATACAGTGGGTAACTGCGATGAGTTTCGCCCCATCGTCCTGGAAGTCCCACGCCGGCGGCGG‑GGGGGGCAGCCCGtg > 6:847190/1‑139 (MQ=255)
ttGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACATGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCCGAGGCTC‑GGGGGGAAGACCCtt > 8:440810/1‑140 (MQ=25)
ttGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCTCTTCTTCCTGGAAGTCCCGCCCCGGAGGCGC‑GGGGGTGCGACCGtt > 6:283299/1‑140 (MQ=25)
ttGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCGCGGGCGG‑GGGGGGCAGGCCggt > 4:759486/1‑138 (MQ=21)
ttGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCCCCCCAGAGGGGCGGGGGGGCAGACCGt > 4:115013/1‑140 (MQ=21)
gCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCGGGGGCGG‑GGGGGGGAGACCGTTat > 8:72194/1‑139 (MQ=25)
gCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCCCCGGCGGCGC‑GGGGGTGACACCGGTat > 2:952778/1‑139 (MQ=21)
tCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAacg < 4:249972/140‑1 (MQ=255)
gcgAATGGCGTTCCCCTCTGAACCCGCCACCTTACAGGCTTTACACCCGATACAGGTGGTAACGTCGAAGAGTAGCGCCACTTCTTCCTGGCAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAacgac < 2:731979/140‑1 (MQ=255)
gAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAAcgacga < 5:58941/140‑1 (MQ=255)
gAATGTCGTTACACTCCTAACACGCCACCTTACATGGGTTACAGACGATACAGGTGGTAAGGGCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGG‑GGGGGTCAGACCGTTAGTCGCGGAAcgacga < 6:68614/140‑1 (MQ=255)
tGTCGTTCCACTCTGACCCCGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGCGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATg < 6:753404/140‑1 (MQ=255)
tGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCGGAGGCGC‑GGGGGTGCGACCCGTAGTCGCGGGACGGCCAAtt > 4:564574/1‑139 (MQ=21)
gTCGTTCCACTCTTAACACGCCACCTGACAGGATTTCCAGCCTATACAGGTGGTAACGTCTATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGa < 8:380164/140‑1 (MQ=37)
gTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTGCCCCCCCGGGGGGGC‑GGGGGGGAGCCCCGGAGTTGCGGAACACCGaaagt > 5:547988/1‑137 (MQ=17)
gTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGGGCCGGCGGGGC‑GGGGGGGAGCGCGGTAGTGGCGGGACGACGGAttg > 8:614142/1‑138 (MQ=18)
gTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGa < 6:151292/140‑1 (MQ=255)
gTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGGGAGCCCCGTAGTCGCGGGCCGACGAATgt > 6:270527/1‑139 (MQ=21)
gTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCGGGGGGGC‑GGGGGGGCGACCGTTAGTCGCGGCCCGCCGAATGa > 2:773764/1‑140 (MQ=21)
gTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCGGCGGGGG‑GGGGGGGAGACCCTTTGTCGCGGGACGACGACTgt > 6:642969/1‑139 (MQ=18)
ttCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCCCCCCGGCGGCGC‑GGGGGGCAGACCGTTAGTGGCGGAACGACGAATGatata > 2:64251/1‑139 (MQ=25)
ttCCACTCTCAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTTGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGG‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATc < 2:631345/140‑1 (MQ=255)
cACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTg < 2:466874/140‑1 (MQ=255)
ctctGACCACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGTAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCg < 7:597316/140‑1 (MQ=255)
tctGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCCCCCCGGGGGCGG‑GGGGGGGAGCCCCGGTGTAGCGGGACGCCGAAAGATATATTgggg > 5:735829/1‑137 (MQ=12)
tctGAACACGCCACCTGACAGGCGTTACAGCCGATACAGGTGGTAACGTAGATGAGTTTCGCCCCTTAGTCCTGGAAGTCCAGCGCCGGAGGCGA‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGa < 7:728328/140‑1 (MQ=37)
aaCACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGa < 4:85271/140‑1 (MQ=255)
aaCACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCCCGCCGGGGGGGC‑GGGGGGGAGGCCCGTAGTCGCGGGACGGCCCAAGGTATATTGGGATTgt > 1:373107/1‑139 (MQ=18)
ccacGCCACCTGACAGGCTTTACCGCCGAAACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGAt < 8:515929/139‑1 (MQ=255)
ccacGCCACCTGACAGGCTTTACAGCCGATTCAGGTGGTAACTTCTATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGTCGAATGATATCTTGCGATTGAt < 2:226877/139‑1 (MQ=255)
acccGCCACCTGACAGTCTTTACAGCCGATACAGGTGGTAAGTTCGATGAGTTTCGCCACTTCTTCCTGGACGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGAt < 6:605727/137‑1 (MQ=38)
acacGCCCCCTGACTGGCTTTACAGCCGATACAGGTGGTAACGGCGATGAGTTTCGCCACTTCTTCCGGGAAGTCCCGCGCCTGCGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGAt < 7:35970/140‑1 (MQ=38)
acacGCCACGTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCTATTAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGAt < 8:157670/140‑1 (MQ=255)
acacGCCACCTGCCAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGAt < 3:489254/140‑1 (MQ=255)
acacGCCACCTGACAGGCTTTACAGCCTATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGACGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGAt < 3:967626/140‑1 (MQ=255)
acacGCCACCTGACAGGCTTTACAGCCTATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGAt < 1:491906/140‑1 (MQ=255)
acacGCCACCTGACAGGCTTTACAGCCGATACTGGTGGTAACGTCGATGTGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGAt < 3:476815/140‑1 (MQ=255)
acacGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTTACGTCGATGAGGTTCGCCACTTCTTCCGGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGAt < 2:816311/140‑1 (MQ=255)
acacGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGAt < 4:891245/140‑1 (MQ=255)
acacGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGAt < 5:392634/140‑1 (MQ=255)
acacGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGAt < 1:746403/140‑1 (MQ=255)
acacGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGAt < 3:764672/140‑1 (MQ=255)
acacGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGAt < 3:25140/140‑1 (MQ=255)
acacGCCACCTGACAGGATTTACAGCCGATACAGGTGGTAACGTCGTTGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGAt < 6:73082/140‑1 (MQ=255)
acacGCCACATGACAGGTTTTACATCAGATACAGGTGTTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGAt < 4:156632/140‑1 (MQ=255)
gCCACCTGCCAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCGGAGGCGC‑GGGGGGCCGACCGTTAGTGGGGGCACGTCGAATGATATATTGGGATTGATaatc > 8:526377/1‑138 (MQ=25)
gCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAAcgacga < 1:973499/117‑1 (MQ=255)
gCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCCCGCCGGGGGCGG‑GGGGGGGAGGCCGGTATTCGCGGCACGCACAATTATATATTTGGATTGAtttgg > 8:637265/1‑136 (MQ=16)
ccACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGcc < 6:219799/140‑1 (MQ=255)
aCCTGACAGGCTTTACAGCCTATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCat < 3:389783/140‑1 (MQ=255)
cggatttACCGCCGATCCACGTGGTAACGTCGATGATTTTCACCACTACTTCCTGGAAGGCCCCCGCCGGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATgtcgt < 1:597657/136‑1 (MQ=255)
cggCTTTACAGCCGATACAGGAGGTAACGGCGCTGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATgtcgt < 1:100107/139‑1 (MQ=255)
cggCTTACCAGCCGATACAGGTGGTAACGTCTATGCTTTTCGACACTTCTTCCTGGACGGCCCGCGCCTGCGGCGA‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATgtcgt < 6:208931/139‑1 (MQ=255)
aGGCTTTACCGCCGATACAGGTGGTAACGTCGATGTTTTGCGCCACTTCTTCCTGGAAATCCCGCGCCTTAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATgtcgt < 5:484417/140‑1 (MQ=255)
aGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATgtcgt < 7:217305/140‑1 (MQ=255)
aGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATgtcgt < 7:118147/140‑1 (MQ=255)
aGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCCCCGGGGGCGC‑GGGGGGCAGACCGGTAGTCGCGGGACGACGAATGATATATTTCGATTTATAAGCCATATttcgg > 4:389783/1‑139 (MQ=37)
aGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTACTGGAAGTCCCGCGCCTGAGGCGC‑GGGTGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATgtcgt < 2:278296/140‑1 (MQ=255)
ggCTTTAGAGCCGATACTGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGACGTCCCGCGCCTGAGGCGC‑GGGGGGCAGACCGTTCGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATgtcgtc < 4:45914/140‑1 (MQ=255)
ggCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATgtcgtc < 7:87016/140‑1 (MQ=255)
aTACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCCCGCCGGGGGGGC‑GGGGGGCCGGCCGGTAGTGGCGGCACGCCGACTGCTATATTGCGCTTGTTAATCCAAATGGGGTGTCCGGTACAccgt > 4:954335/1‑138 (MQ=255)
cggaggtATCGTCTATGAGCTTCGCCACTTCATCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTcc < 3:170079/136‑1 (MQ=255)
tggtAACGGCGATGAGTATCGCCACTTCTTCCTGGACGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCcaca < 8:583800/140‑1 (MQ=255)
tggtAACGCCGATGAGTTTCGCCCCATCTTCCTGGAAGTCCCGCGCCGGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCcaca < 8:756654/140‑1 (MQ=255)
gtttcGTCGATGAGTTTACCCACTTCTTCCTGGAAGTCCCTCGCCTGAGGCGC‑GGGGGTCAGACCGTTTGTAGCGGAACGACGAATGATTTCTTGCGATTGTTAAGCCATATGTCGTCTCCGTTACACCTTTTCCACAtt < 2:591018/136‑1 (MQ=255)
aatgTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGGTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCCACATTca < 7:74712/137‑1 (MQ=255)
cGTCGAGTAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCCACATTcaca < 2:148977/140‑1 (MQ=255)
gttGAGTTTCCTCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCTC‑GGTGGTCAGACCGTTAGTCGCGGAACGACGTATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTGCACATTCACaagga < 1:458559/138‑1 (MQ=255)
gATGAGTTTCTCCACTTCTTCCTGGAAGTCGGGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGAAGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCCACATTCACaagga < 3:188775/140‑1 (MQ=255)
gATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCCACATTCACaagga < 2:964192/140‑1 (MQ=255)
gATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCCACATTCACaagga < 8:471621/140‑1 (MQ=255)
gATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCCACATTCACaagga < 2:180119/140‑1 (MQ=255)
gATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCCACATTCACaagga < 7:707720/140‑1 (MQ=255)
caTGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCCACATTCACaagta < 2:424121/139‑3 (MQ=255)
ttCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCCACATTCACAAGGAAGGACtt < 1:193766/140‑1 (MQ=255)
aCTTCTTCCTGGACGTCACTCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGTAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTc < 3:88529/140‑1 (MQ=255)
aCTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTc < 7:634691/140‑1 (MQ=255)
ttcttcCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCg < 8:1366/140‑1 (MQ=255)
cttcCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGc < 1:34748/140‑1 (MQ=255)
ccTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTc < 2:899057/140‑1 (MQ=255)
cTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCt < 3:50759/140‑1 (MQ=255)
aaGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCTGCgt < 8:167504/140‑1 (MQ=255)
aGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCTGCgtg < 5:782316/140‑1 (MQ=255)
tCCCGCGCCTGAGGAGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAATCCATATGTCGTCTCCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCTGCGTGtt < 8:11875/140‑1 (MQ=255)
ccggAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTATCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCTGCGTGTTCGCATCa < 2:380256/137‑1 (MQ=255)
gc‑gGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCTGCGTGTTCGCATCACCGACGaa < 2:303170/140‑1 (MQ=255)
gc‑gGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCTGCGTGTTCGCATCACCGACGaa < 5:599015/140‑1 (MQ=255)
c‑gGGGGTCAGACCGTTAGTCGCGGAACGACGAATg > 4:540970/1‑35 (MQ=255)
ggggggTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCTGCGTGTTCGCATCACCGACGAAt < 6:120304/139‑1 (MQ=255)
ggggTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTACACATTAACAAGGAAGGACTTAAACTCCGGCGTCTGCGTGTTCGCATCACCGCCGAATgg > 5:882557/1‑140 (MQ=255)
tCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCTGCGTGTTCGCATCACCGACGAATGGCGTc < 4:783701/140‑1 (MQ=255)
tCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCTGCGTGTTCGCATCACCGACGAATGGCGTc < 2:559277/140‑1 (MQ=255)
tCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCTGCGTGTTCGCATCACCGACGAATGGCGTc < 1:110067/140‑1 (MQ=255)
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CAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGC‑GGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCTCCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCTGCGTGTTCGCATCACCGACGAATGGCGTC > NZ_CP022686/2868615‑2868892
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
