Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F2 I0 R1
|
252 |
7301.5 |
9636800 |
98.5% |
9492248 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,868,753 |
T→G |
14.5% |
T18P (ACC→CCC) |
fdoH ← |
formate dehydrogenase O subunit beta |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,868,753 | 0 | T | G | 14.5%
| 314.2
/ 17.4
| 176 | T18P (ACC→CCC) | fdoH | formate dehydrogenase O subunit beta |
| Reads supporting (aligned to +/- strand): ref base T (28/119); new base G (24/5); total (52/124) |
| Fisher's exact test for biased strand distribution p-value = 7.77e-11 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 184 total aligned reads displayed.
CCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCT‑CCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCTGCGTGTTCGCATCACCGACGAATGGCGTC > NZ_CP022686/2868614‑2868892
|
ccAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTCACAGGCTTTACAGCCGAAACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTACCTGGACGTCCCGCGCCTGAGGCGCGGGGGt < 7:716571/140‑1 (MQ=255)
caaaTGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTCACCACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGt < 3:1215777/138‑1 (MQ=255)
cAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGtg > 4:508719/1‑139 (MQ=255)
aTGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAg > 8:1050598/1‑140 (MQ=255)
aTGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCAGCGGCGCGGGGGTc > 1:1161856/1‑138 (MQ=255)
aTGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCCCCCCAGAGGCGCGGGGGtg > 2:546091/1‑137 (MQ=255)
aTGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCAGATACAGGTGGTTACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCCCGCCCGGGGCGGGGGGGTc > 1:692394/1‑138 (MQ=25)
aTGTTATTCCCCACGTTAACGCGATGGTCGTTCCACTCTGAACACGCCACCTGACAGGTTTTACAGCCGATACAGTGGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGACGTCCCGCGCCTGAGGCGCGGGGGGCAg < 3:926296/140‑1 (MQ=255)
ttATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCCCGCCGGCGGCGCGGGGGGCAG‑a > 1:903540/1‑138 (MQ=255)
ttGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCCCCCCGTCGGCGCGGGGGGCAG‑ACCGtt > 7:165715/1‑140 (MQ=21)
ttGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGAGACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCCCGCCAGAGGCGGGGGGGTGAGCACCGt > 3:382490/1‑140 (MQ=21)
aCGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCCCGCCGGCGGCGCGGGGGGCAC‑CCCGTTAGTcgc > 8:1027689/1‑140 (MQ=21)
cGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTGAG‑ACCGTGAGTcg > 1:1149064/1‑138 (MQ=255)
tCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGaa < 2:998429/138‑1 (MQ=255)
tCGCGAATGGCGTTCCACTCTGAACACGCCACCTGCCAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAacg < 8:625810/140‑1 (MQ=255)
tCGCGAATGGCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAacg < 4:191328/140‑1 (MQ=255)
tCGCGAATGCCGTTCAACTCTGAACACGCCACCTGCCAGGCTTTACCGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGACGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGaa < 1:495701/138‑1 (MQ=255)
ccgcgAATGTCGTTCCACGCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGAGGAGTTTCGCCACTTCTTCCTGCAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGaa < 2:523842/137‑1 (MQ=255)
gAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGCGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAAcgacga < 4:326961/140‑1 (MQ=255)
gAATGTCGTTCAACTCTTAAAACGTCCCCTGACTGGCTTTACATCGGATACAGGTGGTAACGTCGATGTGGTTCGCCACTTCTTCCTGGAAGGCCCGCGCCTGCGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAAcgacga < 6:504506/140‑1 (MQ=255)
gTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTGCCGCGCCGGCGGGGGGGGGGGGCG‑GCCGGTAGTCGCGGGACGACGAATGa > 7:103643/1‑140 (MQ=18)
gTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGa < 3:80669/140‑1 (MQ=255)
gTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCCCGCCGGAGGCGCGGGGGGGAG‑CCCGGTAGTAGCGGCacgacgcaaga > 8:849540/1‑135 (MQ=21)
ttCCACTCTGAACAGGCCACGTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATc < 5:392532/140‑1 (MQ=255)
ccACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCAGAGGCGCGGGGGGCAG‑ACCCTTAGTAGCGGAACGACGAAatatata > 1:897158/1‑137 (MQ=25)
ctctGAACACTCCACCTGACAGGGTTTAGAGCCGACACAGGTGGTAACGTCGATGAGTTTCTCCACTGATTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCg < 4:131648/140‑1 (MQ=255)
tGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCCCCGGGGGGGCGGGGGGCGG‑ACCGTTTGTGGCGGGACGCCGGATGATATATTggggtt > 7:353365/1‑135 (MQ=18)
tGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCCCGCCGGGGGCGCGGGGGGGCG‑ACCCGTAGTGGCGGGACGACGAATGGTATATTTGGAtt > 5:30764/1‑140 (MQ=18)
aaCCCGCCACCTGACAGGCTTTACAGCCGATTCAGGTGGTAACGTCGATGAGTTTCGCCACTTCTT‑CTGGAAGTCCCGCGCCGGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGAt < 3:1064659/140‑1 (MQ=38)
ccacGCCACCTGACAGGATTTACAGCCGATACAGGTGGTACCGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCGGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTg < 1:727247/137‑1 (MQ=255)
acccGCCACCTTACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGGCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGAt < 5:947514/137‑1 (MQ=255)
acccGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGCTTCGCCACTTATTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGAt < 7:61504/137‑1 (MQ=255)
acccGCCACCGGACAGGCTTTACAGCCGATACTGGTTGTTACGTCGATGAGTTACGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGTCGAATGATATCTTGCGATTg < 1:998202/135‑1 (MQ=38)
acacGCCACCTTACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCTCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGAt < 3:685034/140‑1 (MQ=255)
acacGCCACCTGACCGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGAt < 7:767566/140‑1 (MQ=255)
acacGCCACCTGACAGGCTTTCCAGCCGATACAGGTGGTAACGTCGATGAGGTTCGCCACTTCTTCCTGGAAGTCCCGCGCCGGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTg < 1:764891/138‑1 (MQ=255)
acacGCCACCTGACAGGCTTTACTGCCGATCCAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGGGCCTGCGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGAt < 7:534962/140‑1 (MQ=255)
acacGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGCAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGAt < 6:387840/140‑1 (MQ=255)
acacGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTg < 2:1018941/138‑1 (MQ=255)
acacGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTg < 2:458484/138‑1 (MQ=255)
acacGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGAt < 6:1138985/140‑1 (MQ=255)
acacGCCACCTGACAGGATTTACAGCCGATACAGGTGGTAACGTCGTTGTTTTTCGCCACTTCTTCCTGGTAGCGCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGAt < 5:577802/140‑1 (MQ=38)
acaaGCCACCTGACAGGCTTTACCGCCGATACAGGTGGTAACGTCGATTAGTTGCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTg < 2:794279/138‑1 (MQ=255)
acaaGCCACATGACTGGATTTACAGCCTATACTGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGTACGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACAACGAATGATATCTTGCGATTGAt < 6:33339/140‑1 (MQ=255)
cacGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCCCGCCTGAGGCGCGGGGGTCAG‑CCCGTTAGTCGCGGGACGACGAATGATATATTGCGATTgg > 2:949334/1‑137 (MQ=255)
gCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCCCGCAAGGGCCGCGGGGGGCAG‑ACCGTTATTCGCGGAACGACGAAAGTTAAAGTGCGATTGGTaatc > 4:900957/1‑138 (MQ=21)
ccACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCTATTAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCCGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGcc < 8:393433/140‑1 (MQ=255)
ccACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGcc < 4:676012/140‑1 (MQ=255)
cccTGACAGGCTTTACAGCCCATACAGGTGGTAACGTCGATGAGTTGCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCat < 4:616554/139‑1 (MQ=255)
tggCTTTACAGCCGTTACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATgtcgt < 5:476140/139‑1 (MQ=255)
cggCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATgtcgt < 4:731990/139‑1 (MQ=255)
cggCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATgtc < 2:869218/137‑1 (MQ=255)
aGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGACGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATgtcgt < 6:815864/140‑1 (MQ=255)
aGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATgtcgt < 8:603160/140‑1 (MQ=255)
aGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATgtcgt < 6:1088092/140‑1 (MQ=255)
aGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATgtcgt < 6:936427/140‑1 (MQ=255)
aGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATgtcgt < 7:5016/140‑1 (MQ=255)
aGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATgtc < 2:859557/138‑1 (MQ=255)
aGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATgtc < 2:597305/138‑1 (MQ=255)
ggCTTTAAAGCCTATACAGGTGGTAACGTCGATTAGTTGCGCCACTTCTTCCTGGAAGTCCCGCGCCGGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATgtcgtc < 7:332761/140‑1 (MQ=255)
gCTTTTGAGCCGATAATGGTGGTAACTTCGTTGTGTTTCGCCAGTTCTTCCTGGACGTCCCGCGCCTGAGGCGCGGGGGTCAG‑AGCGTTAGTCGCTGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGtct < 4:1198971/140‑1 (MQ=255)
gCTTTACAGCCGATACAGTTGGTAACGTCGATGAGCTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGtct < 8:1140270/140‑1 (MQ=255)
gCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGGCTGTGGCGCGGGGGGGCG‑ACCGTTATTCGGGGTACCCCGATATATATGTTTCGATTGGTAAGCCAAATgtgct > 2:713083/1‑135 (MQ=19)
gCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCCCGCCGGAGGCGCGGGGGGCTG‑ACCGGTATTAGCGGCACGCCGTATGATATATTGCGCTTGATAAGCGATATgtcggcg > 4:836362/1‑137 (MQ=25)
tACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCGGAGGCGCGGGGGTCAG‑GCCGTTAGTGGCGGCACGCCGCAAGATATATTTCGCTTTATAAGCCATATATCGTAT‑CCgg > 4:80104/1‑139 (MQ=37)
aGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCT‑CCGtt < 1:1002764/138‑1 (MQ=255)
aTACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGCGGCGCGGGGGTCAG‑ACCGTTAGTAGCGGAACGACCAAAGAAATAGTGGGATTGAAAAGCCAAATGTCGGCT‑CCGTTaacccat > 8:755059/1‑134 (MQ=255)
aCAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCCAGCCTTTGGCGCGTGGTGAAG‑ACCAGTATTGGCGGTAAGACGAATGATATTGTGGGAGTTATAAGGCAAATTTAGTCT‑CCGTGacacgag > 2:725789/1‑135 (MQ=255)
aGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCT‑CCGTTACACCTTTTcc < 5:282055/140‑1 (MQ=255)
ggtggtAACGTCGATGAGTGTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCATTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCT‑CCGTTACACCTTTTCca < 4:108855/140‑1 (MQ=255)
gtggtAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGCGGCGCGGGGGTCAG‑ACCCTTAGTGGCGGAACGCCGCATGATATATTGGGATTTTTAAGCCAAATTTAGTCT‑CCGTTTCACCATTTacac > 4:716435/1‑140 (MQ=255)
gtggtAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCT‑CCGTTACACCTTTTCcac < 3:128875/140‑1 (MQ=255)
gtggtAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCCCCCCGGAGGCGCGGGGGTCAG‑ACCGGTAGTCGCGGGCACACGAATGATATATTTCGATTTATAAGCCATAATTGGTAG‑GCGTTACACCATTTGcaa > 6:282055/1‑139 (MQ=255)
gtAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCGGAGGCGCGGGGGGCCG‑CCCGTTAGTCGCGGGACGCCGAATGATATATTGCGCTTGATTAGCCATATTTGGTGT‑GCGGTACACCGTTTTcaca > 2:678729/1‑138 (MQ=255)
aaCGTCGAGGTGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCT‑CCGTTACACCTTTTCCACAtt < 1:1024541/138‑1 (MQ=255)
gTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCGGGGGGGCGGGGGGGCG‑GCCATTAGTGGCGGTACGGCGACTGATATCGTGGGGTTGTTAATCCCTATGTGGTGTCCCGTTCCACGTTTACC‑CACTCACaa > 6:687985/1‑140 (MQ=255)
gATGAGTTTCGCCACTTCTTCCTGGACGCCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTAGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCT‑CCGTTACACCTTTTCCACATTCACaagga < 4:421646/140‑1 (MQ=255)
gATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCT‑CCGTTACACCTTTTCCACATTCACaagga < 8:212732/140‑1 (MQ=255)
gATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCT‑CCGTTACACCTTTTCCACATTCACaagga < 7:288616/140‑1 (MQ=255)
gATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCT‑CCGTTACACCTTTTCCACATTCACaagga < 3:971981/140‑1 (MQ=255)
gATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCT‑CCGTTACACCTTTTCCACATTCACaag < 1:368922/138‑1 (MQ=255)
gATGAGTTTCGCCACTTCTTCCGCGACGTCCGGCGCCTGCGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCT‑CCGTTACACCTTTTCCACATTCACaagga < 4:918939/140‑1 (MQ=255)
gATGAGTTGCGCCTCTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGGCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCT‑CCGTTACACCTTTTCCACATTCACaag < 2:1172747/138‑1 (MQ=255)
ttcttcCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCT‑CCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTc < 2:910871/138‑1 (MQ=255)
cTGTAAGTCCCGCGCCCGAGGCGGGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCT‑CCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCt < 8:580910/140‑1 (MQ=255)
ccccGCGCCTGAGGCGAGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCT‑CCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCTGCTTGtt < 5:1040602/139‑1 (MQ=255)
cctcgcCGGCGGCGCGGGGGGAAG‑ACCGTTAGTCGCGGAACGACGATTGATATCTTGCGAGTGATAAGGCATATGTCGTCT‑ACGTTAAACCTTTTCCACATTCACAAGGAAGGACTTATACTCCGGCGTCTGCGGGTTCg < 6:120119/137‑1 (MQ=255)
cgcgCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCT‑CCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCTGCGTGTTCGc < 8:434429/140‑1 (MQ=255)
cgcCTGAGGGGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCT‑CCGTTACACCTTTTCCACATTCACAATGAAGGACTTAAACTCCGGCGTCTGCGTGTTCGCAt < 5:1158655/140‑1 (MQ=255)
cgcCTCAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAAGGATATCTTGCGATTGATAAGCCATATGTCGGCT‑CCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCTGCGTGTTCGCAt < 7:131314/140‑1 (MQ=255)
ccTGTGGCGCGGGGGTCAG‑ACCGTTAGTCGCGTAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCT‑CCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCTGCGTGTTCGCATCa < 6:197591/140‑1 (MQ=255)
aGGCGGGGGTGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGGCGGCT‑CCGTTACACCTTTTCCACATTCAAAAGGAAGGACTTAAACTCCGGCGTCTGCGTGTTCGCATCACaga < 4:1149404/140‑1 (MQ=255)
cgGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCT‑CCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCTGCGTGTTCGCATCACcgacga < 2:238726/138‑1 (MQ=255)
cgGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCT‑CCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCTGCGTGTTCGCATCACCGACGAAt > 4:27523/1‑140 (MQ=255)
cgGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCT‑CCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCTGCGTGTTCGCATCACCGACGAAt > 6:616054/1‑140 (MQ=255)
cgGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCT‑CCGTTACACCATTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCTGCGTGTTCGCATCACCGACGAAt > 3:997387/1‑140 (MQ=255)
ggggTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATgtc > 1:295417/1‑61 (MQ=255)
ggTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCT‑CCGGTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCTGCGTGTTCGCATCACCGACGAATgg > 2:308547/1‑138 (MQ=255)
tCAG‑ACCGTTAGTCGCGGAACGACTAATGATATCTTGCGATTGTTAAGCCATATGTCGTCT‑CCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCTGCGTGTTCGCATCACCGACGAATGGCGTc < 4:744427/140‑1 (MQ=255)
tCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCT‑CCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCTGCGTGTTCGCATCACCGACGAATGGCGTc < 3:716435/140‑1 (MQ=255)
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CCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAG‑ACCGTTAGTCGCGGAACGACGAATGATATCTTGCGATTGATAAGCCATATGTCGTCT‑CCGTTACACCTTTTCCACATTCACAAGGAAGGACTTAAACTCCGGCGTCTGCGTGTTCGCATCACCGACGAATGGCGTC > NZ_CP022686/2868614‑2868892
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
