Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F13 I0 R1
|
230 |
5035.0 |
9125430 |
98.4% |
8979423 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,674,244 |
T→G |
7.5% |
T182P (ACC→CCC) |
ygfB ← |
UPF0149 family protein YgfB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,674,244 | 0 | T | G | 7.5%
| 406.9
/ 6.1
| 216 | T182P (ACC→CCC) | ygfB | UPF0149 family protein YgfB |
| Reads supporting (aligned to +/- strand): ref base T (47/147); new base G (14/8); total (61/155) |
| Fisher's exact test for biased strand distribution p-value = 2.76e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 231 total aligned reads displayed.
GCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGATCG > NZ_CP022686/1674105‑1674383
|
gcgcGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGcggt < 3:717121/140‑1 (MQ=255)
cggcgCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCAGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGcggtg > 7:362898/1‑137 (MQ=255)
cgcgGCCGGGTTGCATTAGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTATAGTGTAGAGTCGGTTTTTGTACTTCTGGCGcgggcggt < 7:1037778/138‑1 (MQ=255)
cgcTGCCGGGTTGCATTTGCTCTACACTGGCCTGACGGCGACGCTGAAACTCTTGCCGGTATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTg < 5:332080/140‑1 (MQ=255)
tGCCGGGTTGCTTTTGCTCTACCAGGGTCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 2:1069201/140‑1 (MQ=255)
tGCCGGGTTGCTTTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 2:960763/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 1:1125977/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 2:1062805/140‑1 (MQ=255)
ggCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTCCgg < 4:1036899/139‑1 (MQ=255)
ccGGGTTGCTTTTGCTCTACCAGGGCCTGACGGCGACGCTTAATCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGAt < 3:509736/140‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGTCGACGCTGAAACTCTTGCAGGTATATATCACTCATAACACTCTTCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGTTCGGTTGCTGAt < 6:725628/140‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCTCTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGAt < 2:1089300/140‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGAt < 6:1012370/140‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTCTGGGTCGGTCGGTTGGGGAt > 4:229061/1‑140 (MQ=255)
tagtaTTTGCGCTACCAGGGCCTGTCGGCGACGCTGAAACGCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTAGGTTTTTGTTCTTCTGTCGCGGTCGGTTGCGGATGAGTa < 5:831905/136‑1 (MQ=255)
tGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTaa < 6:705660/140‑1 (MQ=255)
cATTTGATCTACCAGGGCCTGACGTCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCATTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAg < 5:694164/140‑1 (MQ=255)
aaTTTGCTCTACCAGGGACTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAg < 5:688239/139‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 4:155020/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 4:313051/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 4:713400/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 7:401460/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 7:629190/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 7:90366/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATAGCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCTGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 4:828476/140‑1 (MQ=255)
gtctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCCTAACACTCTCCTTACATTTTTTGTTTTTAGTGTCGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGTATGAGTATAGGTGTCg < 6:212644/139‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTTCTTATTGCGCGGTCGGTTGGGGATGAGTTAAGGTTTCg > 3:147109/1‑140 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 1:490307/140‑1 (MQ=255)
aCCAGGGCCTGACGGCGACGCTGAAACTCTTGCTGGGATATATCACTCATAACACTCTCCTTACATATTTTGTTTTTAGGGTAGAGTCGGTTTTTTTTCATCTGGGGCGGGCGGTTGTGGATGAGTAAAGgggtgctggg > 2:941742/1‑134 (MQ=255)
gCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTAGTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTTTGGTGGCATAACa > 3:749672/1‑140 (MQ=255)
tGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTTATTCTTGGGCGGGCGGGTGGGGAGTTGTAAAGGTGTCGTGGCATTACAgcg > 5:1091388/1‑140 (MQ=255)
tGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTGTTTTTTCTTATGGCGCGGGGGGTTGCGGATGTGTAAAGGTGTCGTGGGATAACAggg > 5:132680/1‑138 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTGGGTTGCGGGTGAGTAAAGGTGTGGTGGGATAACcgcgcg > 6:1034449/1‑140 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAATTATGGCGCGGTCGGGTGGGGATGACTAAAAGTGTAGTGGCATaaaaaaccc > 1:413170/1‑133 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCgg < 2:174250/140‑1 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCgg < 5:518865/140‑1 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCgg < 6:688086/140‑1 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCgg < 4:868408/140‑1 (MQ=255)
cGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGGTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCaa < 2:578779/140‑1 (MQ=255)
cGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTACTTATGGCGCGGTCAGTTGAGGATGATTAAAGGTCTAGTGGCATAAGAACGCGGcca > 2:438592/1‑138 (MQ=255)
aCGCTGATACTCTTGCCGGGAGATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTCGAGGCGGTTTATGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAATGTGTCGTGGCATAACAGCGCGGCAaca < 6:475709/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAaca < 2:391215/140‑1 (MQ=255)
aaaCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTGTTTAGTGTAGAGGCGGGTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGa < 8:889953/138‑1 (MQ=255)
aCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACg < 7:266922/138‑1 (MQ=255)
ttGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCg < 6:364962/140‑1 (MQ=255)
gCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTTCTTCGTGCGCGGGTGGTTGGGGATGAGGAAATGTGTGGGGGGCTAACAGCGCCGCGACACGGTCGTACTCgtt > 5:94956/1‑138 (MQ=255)
ccGGGATATATCACTCATAACACTCTCCTTTCATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTCTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTTGCATAACAGCGCGGCAACACGGACGTACTCga < 8:1074785/138‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatgat < 1:832668/140‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGACGTGGCATAACAGCGCGGCAACACGGACGTACTCgatgat < 4:726252/140‑1 (MQ=255)
atatCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTTCTTAAGGAGCGGGCGGGTGGGGATGAGTAAATGGGTTCTGGCATAACAGCGCGGCCACACGGCCGGTCTCGCTGATCTCtt > 3:607651/1‑140 (MQ=255)
atatCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAATTCTGGCGCGGTCGGTTGGAGATGAGTAAATGTTTCGTGGCCTAACAGCGCGGCAACACGGACGTACTCgatgataga > 8:110879/1‑135 (MQ=255)
atCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACATCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGGGGCATAACCGCGCGGCAACACCGAATTAATAGAAGATCTCTTCa > 2:866774/1‑140 (MQ=255)
cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTAAGTATGGCGCGGTGGGTTGCGGATGAGTAAAGTTGTAGTGGCATAACAGCCCGGCCTCCCGCACCTACTCGATGATCTATTAAAGCg > 3:106290/1‑140 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGa < 1:957061/140‑1 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTAGGGTTTTTTACTTATGGGGCGGTGGGTGGGGGATGAGTAAATGTGTCGTGGGATTACCGCGCGGGGACACGGGCGTACTGGATGATCTAATGAAGCgc > 3:96857/1‑139 (MQ=255)
aTAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 4:851472/72‑1 (MQ=255)
ctctCCTTACATATATTGTTTATATTGTAGAGTCGGGTTTTGTACTTCTGGCGCGGTCGCGTGAGGATGAGTAAAGGTGTCGTGTCATAACAGCGCGTCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTc < 7:692763/138‑1 (MQ=255)
tctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTTCATCTGGGGAGGTCGGGTTCGGATGAGTAAATGTTTCGTGGGATAACACCGCGGCAACACGGACGTAAAGGAAGATATCTTAAAGCGACATTTCaac > 4:761180/1‑139 (MQ=255)
ctcCTTACATTTTTTTTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGGGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa < 8:441771/138‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTTCTTATGTCGCGGTCGGGTGCGGTTTTTTAAATGTGTCGTTGCATAAAAGAGCGGAAACACGGACGTACTGGATGATATCTTCAATCGACATTTCAAga > 4:112702/1‑139 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACTTCTGGCGCGGTCGGTTGCTGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa < 7:336638/138‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg > 1:1076213/1‑80 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa < 7:341823/138‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGACGGTTTTTGGACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAAAAGCGCGGCCACACGGCCGTTCTCGATGATATCTTTAAGCGACAATTCAAgg > 2:1136570/1‑139 (MQ=255)
aCATTTTTTGTTTTAAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGGTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTcc < 5:8304/140‑1 (MQ=255)
tttAGTGTAGAGTCGGGTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtct < 2:268482/140‑1 (MQ=255)
ttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtctt < 3:929961/140‑1 (MQ=255)
ttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtctt < 4:939859/140‑1 (MQ=255)
tAGTGTAGAGTCGGTTTTTGTACTTGTGGCGCGGTGGGGTTCGGATGTGTAAAGGTGTCGTGGCATAACAGCGCGGCCACAAGGACCTAGTCGATGATCTGTTCAAGCGCAATTTCAAGCTGTTGATTAtgttcgtgt > 8:801165/1‑136 (MQ=255)
gtgtAGAGTCGGTTTATGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCGCTTCAAGCGACATTTCAAGCTCTGCCTGATcttcgtcttcgt < 2:694383/140‑1 (MQ=255)
gtAGAGTCGGTTTTTGTACTTCTGGCGCGTTCGGTTGCGGATGAGTAAAGTCGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTtcgtcg < 6:838518/140‑1 (MQ=255)
gtAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAATGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATcttcgtcttcgt < 7:1000511/138‑1 (MQ=255)
gtAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTtcgtcg < 5:707647/140‑1 (MQ=255)
gtAGAGTAGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTtcgtcg < 1:1005084/140‑1 (MQ=255)
ggTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCaa < 1:866774/140‑1 (MQ=255)
gTTTTTGTACGTATGGCGCGGTAGGTTTCGGTTGTGGAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGGTCTCGATGATCTCTTCAAGCGACAATTAAAGCTCTTCCGGCTCGTCGGAGTAGTCGTTAccccaa > 2:613144/1‑137 (MQ=255)
ttGTCCTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 7:13504/138‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCTGTTGCGGATGAGTAAAGGTGTCGTGTCATAACAGCGCTGCAACAAGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgct < 3:259084/140‑2 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGCTGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 1:313695/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGATTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGAACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 5:463265/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 3:29355/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 3:406974/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 8:462956/138‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 8:824435/138‑1 (MQ=255)
ttGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 5:283095/140‑1 (MQ=255)
ttGTACTTCTGGCGAGGTCGGTTGCGGATGAGTAAAGGAGTCGTGGCATAACAGCGCGTCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 3:442287/140‑1 (MQ=255)
ttGTACATATGGCGCGGTCGGTTGCGGATGAGTAAATTTGTCGTGGCATAAAAGCGCGGCAACACGGACGTAATCGATGATCTCTTCAAGCGACATTTAAAGCTCTTCCTGATCTTAGTCTTCGTCGTAACCCCACta > 8:347728/1‑137 (MQ=255)
gTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 8:206690/138‑1 (MQ=255)
gTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGcgcg < 5:22661/140‑1 (MQ=255)
aCTTCTGGCGCGGTCGGGTGCGGATGAGTAAAGGGGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGAt < 6:1053141/140‑1 (MQ=255)
cTTCTGGCGCGGTCGGTTGCGGATGAGGAAAGGTGTCGTGGCATATCAGCGCGGCAACACGGACGTACTCGATGATCTCTTAAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATg < 1:359314/140‑1 (MQ=255)
tCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGtt > 3:840774/1‑140 (MQ=255)
tGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTAc > 6:436709/1‑140 (MQ=255)
ggCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACg < 4:583519/140‑1 (MQ=255)
ctgtcgttAGCGGATGAGTAAAGGTGTCGTTTCATATCAGCTCGGAAACACGGACTTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAGCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGa < 6:847619/138‑1 (MQ=255)
ctgtcggtTTCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGa < 1:906500/138‑1 (MQ=255)
cggtcggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGa < 1:554051/140‑1 (MQ=255)
cggtcggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGa < 1:65387/140‑1 (MQ=255)
cggtcggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGa < 1:794443/140‑1 (MQ=255)
gtcggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAtc > 1:182582/1‑140 (MQ=255)
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GCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGATCG > NZ_CP022686/1674105‑1674383
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
