Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F35 I0 R1
|
195 |
10216.4 |
8585726 |
98.3% |
8439768 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,674,244 |
T→G |
11.1% |
T182P (ACC→CCC) |
ygfB ← |
UPF0149 family protein YgfB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,674,244 | 0 | T | G | 11.1%
| 293.1
/ 8.9
| 184 | T182P (ACC→CCC) | ygfB | UPF0149 family protein YgfB |
| Reads supporting (aligned to +/- strand): ref base T (36/123); new base G (13/12); total (49/135) |
| Fisher's exact test for biased strand distribution p-value = 5.96e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 195 total aligned reads displayed.
GCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGATC > NZ_CP022686/1674105‑1674382
|
cggcgCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTGTTGTAC‑TTCTGGCGcggtc < 5:666973/138‑1 (MQ=255)
ggcgCTGCCGGGGTGCAGTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGTGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGcggtcggt < 8:531089/140‑1 (MQ=255)
ggagcTGCCGGTTTGCATTTGCTCTACCATGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCTCTAATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGcggtct < 6:303392/135‑2 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGAGGCTGAAACTCTTGCCGGTATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCgg < 7:192837/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGc < 6:766209/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCgg < 1:492125/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCGCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTAC‑TTCTGGCGCGGTCGGTTGCgg < 3:82072/140‑1 (MQ=255)
tGCCGGGGTGCATTTGCTCTACCAGGGCCTGCCGGAGACGCTGAAACTCTTGCCGGTATATATCTCTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCTGTCGGTTGCgg < 2:778044/140‑1 (MQ=255)
ccGTGTTGCATTTGCTCTACCCGGGCCTGTCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGAt < 1:898723/140‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGAt < 4:357305/140‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGAt < 2:400920/140‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGGCGGTTGCGGAt < 8:203529/140‑1 (MQ=255)
ttGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTa > 3:573339/1‑140 (MQ=255)
aaTTTGCTCTACCAGGGGCTTTCGGCGAAGCTGAAACTGTTGCCGGGATATATCACTCATAACACTCTCCTTAAATTTTTTTTTTTTAGTGTAGAGTCGTTTTTTGTAC‑TTCTTGAGCGGTCGGTTGCGGATGAGTAAAg < 3:42182/139‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGTCGAAGCTGAAACTCTTGACTGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGGGTAGAGTCTGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 7:959205/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 2:1002068/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 2:919605/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 2:139112/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 1:519440/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 8:247781/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 4:893811/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 4:706279/140‑1 (MQ=255)
gCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTAC‑TTCTGGCGCGGTCGGGTGGGGATGAGTAAAGgtttg > 4:647205/1‑137 (MQ=255)
gggCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATaa < 8:423763/140‑1 (MQ=255)
gCCTGACGGCGCCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTC‑TTATGGCGCGGGCGGTGGCGGATGAGTTAATGTGTGGTGGGCTAACa > 1:1005027/1‑140 (MQ=255)
tGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTAC‑TTGTGGCGCGGTCGGTTGCGGATTTGTAAAAGTGGGGGGGCATAAAAgcg > 2:382499/1‑140 (MQ=255)
tGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGGGGATGAGTAAATGGGTCGTGGCATAACAgcg > 1:658360/1‑140 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAgcgc < 5:187614/138‑1 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCgg < 1:765489/140‑1 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTATCCTTACATTTTTTGTTTTTAGTGTAGAGGCGGTGTTTGTAC‑TTCTGGCGCGGGCGGGTGCGGATGAGTAAAGGTGTCGTGGCATAACAgcgc < 6:119340/138‑1 (MQ=255)
cGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGc < 6:616248/138‑1 (MQ=255)
cGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCaa < 2:215415/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATCTCACTCAAAACACTCTCCTTACATTTTGTGGTTTTAGTGTAGAGTCGGTTTTTGTCC‑TTCAGGCGCGGTCGGCTGCGGTTGAGTAAAGGTGGCGTGGCATAACAGCGCGGCAaca < 8:986720/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAaca < 1:1000082/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAaca < 4:1049273/140‑1 (MQ=255)
cTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAacac < 5:632478/138‑1 (MQ=255)
cTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACgg < 3:840839/140‑1 (MQ=255)
gAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGAc < 2:971775/140‑1 (MQ=255)
aaaCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACg < 2:794508/140‑1 (MQ=255)
ctctTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTAc < 1:974535/140‑1 (MQ=255)
ctctTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTAc < 8:174389/140‑1 (MQ=255)
tctTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACt < 7:1004348/140‑1 (MQ=255)
ttGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGGGCGGTCGGTTTCGGCTGAGGAAATGGGTCGTGGCATAACAGCGCGGCAACAAGGCCCTACtag > 1:277637/1‑138 (MQ=255)
ccGGGATATATCACTCATACCAATCTCCGTGCATTTTTTTTTTTTAGGGTCGTGGCGGTTTTTGTAC‑TGCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCTCGGCATCACAGCGCGGCCACACGGACGTACTCgttg < 4:39708/140‑1 (MQ=255)
gtgATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGGCGGGGGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatgat < 7:628312/138‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCTGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatg < 6:660892/138‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatg < 5:517056/138‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTGTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCTGGGCATAACAGCGCGGCAACACGGACGTACTCgatgat < 4:438826/140‑1 (MQ=255)
cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCg < 2:691449/140‑1 (MQ=255)
cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCg < 4:418924/140‑1 (MQ=255)
cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTATTGCGCGGTCGGTTGCGGGTGAGTAAAAGTGTGGTGGGATAACAGCGCGGCACCACGGACGTAATCGCAGATATAGTCAAGCg > 2:1100937/1‑140 (MQ=255)
tCATAACACTCTCCTTACCTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCTGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGc < 5:864928/138‑1 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTGGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGa < 3:398746/140‑1 (MQ=255)
aTAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTGTTTGTAC‑ATATTGGGCGGTCGGGTGGGGGTGAGTAAATGTGTAGTGGGCTAAAAGCGCGGGAAAACCGTCGTACGCGATGTTAACTTAAAGCgg > 6:235111/1‑137 (MQ=255)
aaCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGGCGGTTGCGGGTGATTATAGGTGTGGTTGCATAAAAGCGCGGCAACACGCACGTTCTCGATGATATATTCAACCGACAtt > 2:471741/1‑140 (MQ=255)
aaCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTAC‑GTATTGGGCGGGGGGGTGCGGATGGGGAAAGGTGGCGTGGCCTAACAGCGCGGCAACCCGGGCGTACTCGGAGGACTCTTCAAGCGACa > 6:857357/1‑138 (MQ=255)
cacTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTTC‑TTATGGGGCGGTGGGATGCGGATTAGTTAACGTGTAGGTGCATAAAAACGCGGCAACACCGACGGTATCGTTGATACCTTAAAGCGACAatta > 8:704558/1‑139 (MQ=255)
cacTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTTC‑TTCTGGCGCGGGCGGGTGCGGATGAGTTAAGGTGTCGGGGGATAAACGCGCGGCCACACGGCCGGACTCGATGATCTCTTGAAGCCACAtt > 5:1057561/1‑138 (MQ=255)
acTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCa < 1:326404/140‑1 (MQ=255)
tctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAg < 7:417649/140‑1 (MQ=255)
tctcCTTACATATTTTGTTTTTAGTGTAGAGTCGGATTTTGTAA‑ATCTGTGGCCGTCGGTTGCTGATGAGTAAACTTGTCGTTGCATAACACCCCGGCCACACCGCCCTACTGCATGCTCTCGTAAAGCGACCGTTCAAg > 4:617734/1‑140 (MQ=255)
gctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTGTGTAC‑TTCTGGCGCGGGCGGGTGCGGATGAGTACAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGTTCTCTTCAAGCGACATTTCAAg < 3:227025/139‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTAC‑TTCTGGCGCGGGCGGTTGCGGATGAGTTAAGTTGTCGTGGCATAGCAACGCGGCCACACGGACGTACTCGATGATCTCTTCAAGCGACATTTAAAGc > 8:82597/1‑140 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTTC‑TTATGGCGCGGTCGGGTGCGGATTCGTTAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGGACGAGATGATATATTCAAGCGACATTTGAAGc > 8:574546/1‑140 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCATCACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 1:810921/140‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGGCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 4:1074898/140‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑GTAAGGCGCGGTAGGTTGCGGATTATTAAAGGTGTAGTTGCAAAAAAGCGCGGCCACCCGGCCGGACACCAGGATCTCTTCAAGCGACATATCAAGc > 4:815898/1‑140 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTAC‑TTCTGGCGCGGTCGGTTGGGGATGTGTAAAGGTGTCGTGGCATAACAGCGCGTCAACACGGACGTACTCGATGATATCTTCAAGCGACATTTAAAga > 2:293642/1‑139 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTC‑TTGTGGCGCGGGCGGGTGCCGCTGAGTAAAGGGGTGGTGGGATAACAGAGCGGCGACACCGACGTACGAGTTGATCACTTCAATCGACATTTCaatc > 2:760699/1‑138 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTTTCGTGGCATAAAAGCGCGGCAACACGGACGTAATCGATGATATATTCAAGCGACATTTCAAGc > 6:468238/1‑138 (MQ=255)
aCATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTTC‑TTATGGCGCGGTATGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACCAGGACGGACTAGATGATAGCTTAAAGCGACATTTCAAGCTCttac > 2:994178/1‑138 (MQ=255)
aCATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTGA‑TTATGGCGCGGTCGGGTGCGGATGCTTAAAAGGGTCGTGGCAAAACAGCGCGGCCACAAGGACGTACAGGAAGAAAACTTCAAGCGCCATTTAAAggtagtcc > 2:820139/1‑133 (MQ=255)
aTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTTCTTTGTGGC‑CGGGAGGGAGCGGATGAGGAAATGTGTCTTGGCATAACAGCTCGGCAACACGGACGGACAGGATGAACTCTTCAAGCCACATTACAAACTCttag > 6:55133/1‑136 (MQ=255)
ttttGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtc < 2:906379/140‑1 (MQ=255)
ttGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACg > 4:565854/1‑94 (MQ=255)
ttGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACg < 3:565854/94‑1 (MQ=255)
tttAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtct < 7:740569/140‑1 (MQ=255)
tttAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtct < 8:474762/140‑1 (MQ=255)
gtgcAGAGTCGGTTTTTGTAA‑TTCTGGGGCGTTCGGTTGGGGACTAGTTTAGGTGTCGTGGCATAAGAGCGCTGCAACACGGACGTTCTCGATGATCTCTTCAAGCGACATTTGAAGCTCTGCCTGAtcttcgtattc < 6:357275/138‑1 (MQ=255)
gtAGAGTCTGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTtcgtcg < 3:197739/140‑1 (MQ=255)
gtAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCTGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGTCAACACGGACGTACTCGAGGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTtcgtcg < 1:236720/140‑1 (MQ=255)
tagTCGGGTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTcgtcgt < 5:740735/137‑1 (MQ=255)
gggttttGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCaa < 3:475702/137‑1 (MQ=255)
ttttAC‑TTCTGGCGCGGTCGGGTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 5:847711/135‑1 (MQ=255)
ttGTAC‑TTCTGGCGCGTTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 2:594382/140‑1 (MQ=255)
ttGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 1:382499/140‑1 (MQ=255)
ttGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 2:232643/140‑1 (MQ=255)
ttGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 7:553845/140‑1 (MQ=255)
ttGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 5:945014/138‑1 (MQ=255)
ttGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 6:839096/138‑1 (MQ=255)
ttGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 5:468238/138‑1 (MQ=255)
ttGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTGCGTCGTAACCCAACTg < 5:568591/138‑1 (MQ=255)
gTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGAGTCGTGGCATAACAGCGCGTCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAGCTTCGTCTTCGTCGTAACCCAACTGcgcg < 3:865252/140‑1 (MQ=255)
ttCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGt < 7:3885/140‑1 (MQ=255)
tCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGtt > 3:533399/1‑140 (MQ=255)
ggCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACg < 1:13551/140‑1 (MQ=255)
gcgcGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAg < 8:1059/43‑1 (MQ=255)
gcgcGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAg > 7:1059/1‑43 (MQ=255)
gtcggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAtc > 4:670552/1‑140 (MQ=255)
gtcggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAta > 1:191204/1‑139 (MQ=255)
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GCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAC‑TTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGATC > NZ_CP022686/1674105‑1674382
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
