Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F2 I0 R1
|
252 |
7301.5 |
9636800 |
98.5% |
9492248 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,674,244 |
T→G |
16.2% |
T182P (ACC→CCC) |
ygfB ← |
UPF0149 family protein YgfB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,674,244 | 0 | T | G | 16.2%
| 301.1
/ 17.1
| 206 | T182P (ACC→CCC) | ygfB | UPF0149 family protein YgfB |
| Reads supporting (aligned to +/- strand): ref base T (38/129); new base G (27/10); total (67/139) |
| Fisher's exact test for biased strand distribution p-value = 1.34e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 218 total aligned reads displayed.
GCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGATC > NZ_CP022686/1674105‑1674382
|
gcgcGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGcggt < 8:616740/140‑1 (MQ=255)
cgcgGCGCTGCCGGGTGGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGcggtc < 7:698922/140‑1 (MQ=255)
cggcgCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGcggtcgg < 3:288167/140‑1 (MQ=255)
cgcTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTACTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAAGTATTGCGCGGTCGGTTg > 7:262596/1‑140 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 2:74256/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 3:48569/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 6:326326/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGAACTTCTGGCGCGGTCGGTTGCgg < 4:868259/140‑1 (MQ=255)
tGCCGGGTGTCAGTTGCTCTACCAGGGCCTGACGGCGACGGTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 1:1196783/138‑1 (MQ=255)
tGCCGGGTAGCATTTGCTCTACCAGGGCCTTACTGCGACGCTGAAACTCTTGCAGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTATAGTCGGGTTTTGTAATTCTGGCGCGGTCGGTTGCgg < 3:329119/140‑1 (MQ=255)
gCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTCTTCTGGCGCGGGGGGTTggg > 2:233119/1‑136 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGAt < 3:970874/140‑1 (MQ=255)
tGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTaa < 4:359372/140‑1 (MQ=255)
gCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACATCTGGCGCGGGCGGTTTCGGGTGAGTaaa > 6:1151617/1‑140 (MQ=255)
tGCTCTACCAGGTCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 2:85915/138‑1 (MQ=255)
tGCTCTACCAGGTCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCAATCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 6:265758/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGTCTGCGACGCTGAAACTCTTGCCGGGATATATCTCTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTTGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTATAGgtgt < 3:245677/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGCCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 4:789546/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTAGATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 5:714248/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 7:102464/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 4:1021667/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 7:795285/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 6:146143/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 8:760793/140‑1 (MQ=255)
tGCTCTACCAGGGACTGACGGCGACGATGAACCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGGTGCGGAGGAGTAAAGgtgt < 6:365248/140‑1 (MQ=255)
tGCGCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATACCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 2:162599/138‑1 (MQ=255)
gtctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTAATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCTCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 8:320632/139‑1 (MQ=255)
ctctACCAGTGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTGTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 8:1113385/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 4:708561/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 8:825263/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 4:400922/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 8:1009491/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 4:266403/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 6:87148/140‑1 (MQ=255)
aCCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTAAATTATGCGCGGGAGGGTGCCGCAGAGTAAATGTGTCGT‑ggg > 4:958730/1‑139 (MQ=255)
cAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCAt < 3:616323/140‑1 (MQ=255)
gCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTAGGGGGCGGTCGGGTGCGGATGATTAAAGGTGTGGT‑GGCGTA‑ACa > 7:220740/1‑140 (MQ=255)
cTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTTCTGGTGGCGCGGGAGGTTGGGGATAAGTATAGGTGTCGT‑GGGATC‑Acc > 1:151351/1‑137 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTCTTCGGGGGCGGGGGGGTGGGGGTGTGGTAATGTGGGGT‑GGGATA‑ACAGcgcg > 3:474580/1‑140 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCgg < 7:151898/140‑1 (MQ=255)
ggCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTTATTCAGGCGCGGGGGGTTTGGGATGAGTAAATGTGTGGT‑GGGAGA‑AAAGcccg > 1:67523/1‑138 (MQ=255)
ggCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTTATTGTGGCGCGGGCGGGTTGGGATGAGTAAAGGTTTCGT‑GGGATT‑AAAGcgcg > 1:821946/1‑138 (MQ=255)
cGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCTTA‑ACAGCGCGGCaa < 7:907109/140‑1 (MQ=255)
aagCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAaca < 5:377987/138‑1 (MQ=255)
aCGCTGAAACTCTTGCCGTGATATATCTCTCATAACACTCTTCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTATGTTGCGGATGAGTAAAGGTTTCGT‑GGCATA‑ACAGCGCGGCAaca < 4:578488/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACCCTCTCCTTACATTTTTTGTTTTTAGTGGAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAaca < 4:1104125/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCaa < 2:1135490/138‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTGTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAaca < 8:523074/140‑1 (MQ=255)
cTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTAATTGTGGCGGGGGGGGGTGCGGATGAGTAAAGGTGTGGT‑CGGAAA‑ACACCGCGGccaacc > 1:244329/1‑133 (MQ=255)
aaaCTCTAGCCGGGAAATATCACTCATAACACCCACCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACg < 5:976457/140‑1 (MQ=255)
ctctTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTAc < 7:849844/140‑1 (MQ=255)
ttGCCGGGATATATCACTCATAACACTGTCCTTAAATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTAATTAATGGGCGGTAGGTTGAGTATTTTTTAAGTTGTATT‑GTCATACACA‑CGCGGCAACACGGACGTTCtag > 8:659619/1‑138 (MQ=255)
ttGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTGTCTTGTGGGGCGGTCGGGTGCGGTTGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGGACTCg > 4:1197097/1‑140 (MQ=255)
ttGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTATGGCGCGGTCGGGTGCGGATGCGTTAAGGTGTCGT‑GGCATA‑ACCGCCCGGCAACACGGCCGTAATCg > 8:236894/1‑140 (MQ=255)
atatatCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACTTATGGCGCGGTGGGTTGCGGAATCGTAAAGGTGTAGT‑GGGATA‑ACATCGCGGGACCACGGACGTAAGAgatgatatg > 6:1078844/1‑137 (MQ=255)
atCACTCATAACACTCTCCTTACATTTTTTGTTTTAAGTGTAGATTAGGTTTTTTGACAGATGTGGAGGGAGGTTTATTGAGAGTTAAGGTGTCGT‑GGGATG‑ACGGCGCGGCAACACTGCCGTAAGCgatgatagcttga > 4:1009028/1‑133 (MQ=255)
cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTGTTAGTGCGCGGGCGGTTGCGGTTGGGGAAATGTGTGGTGGGCTTA‑AC‑GCGCGGGAACCCGGCCGGACGCGATGATGTGTTCAACCg > 5:1142844/1‑140 (MQ=255)
tCATAACACTCTCCTTACATTTTTTTTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGa < 5:503125/140‑1 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTACTTATGGCGCGGGAGGTTTCGGATGAATAAAGGTGTGGT‑GGCATA‑ACAGCGCGGCCACACGGACGTACTCGATTATATCTTAAATCGa > 4:389163/1‑140 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGGTTTTTACTTGTGGGGCGGTCGGGTGCGGATGAGTAAAGGTGTGGT‑GGGATA‑ACAGCGCGGCAACCCGGCCGGACACGATGATCTCTGCAAGCGa > 5:84546/1‑140 (MQ=255)
cATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTGTGGCGCGGTGGGTTGGGGATGAGTAAAGGTGTGGT‑GGCATA‑ACAGCGCGGCCACACGGACGTACTCGTTGATATCTTACAGCGAc > 7:505213/1‑140 (MQ=255)
aTAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTATGGGGGGGTCGGTTGGGGCTGGGTAAAGGTGGGGT‑GGCATA‑ACAGCGCGGCGACACGGGCGGACTCGGTGAGATCTTCAAGCGACa > 8:843017/1‑140 (MQ=255)
ccacTCTCCTTACATATTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACAt < 2:759835/137‑1 (MQ=255)
tctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAg < 8:410580/140‑1 (MQ=255)
tctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGG‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCTAg < 5:1056751/140‑1 (MQ=255)
tctcCTTACATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCa < 2:639930/138‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 3:64858/140‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 6:926082/140‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 6:202530/140‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAATTGAGGCGCGGGCGGGTGCGGATGAGGAAATGTGTCGG‑GGGATA‑ACAGCGCGGCAACACGGACGGACTCGATGATCTCTTCAAGCGACATTTCAAGc > 8:560335/1‑140 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa < 1:353929/136‑1 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa > 2:353929/1‑136 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGTGTTTGTACTTGTGGCGCGGGCGGGTGGGGATGAGTTAAGGTGTGGT‑GGCATA‑ACACCGCGGCAACCCGGCCGGACTCGATGATCTCTTAAAACGACATTTAAAGctc > 4:625182/1‑140 (MQ=255)
ccTTACATTTTTTGTTTATAGTGTAGAGTCGGTTTTTTTACTTATAGCGCCGTCGGGTTCGGTTGAGTAAAGGTGTCCT‑GGCATA‑AACGCCCCGCAACAAGGACGGACACGAAGCTCTCTACAAACGACATTTCaaac > 2:252583/1‑136 (MQ=255)
aaaTTTTTTGTTTTTAGTGTAGAGTCTGTTTTTGTACTTCTGTCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTcc < 6:775174/138‑1 (MQ=255)
aCATTTTTTGTTTTTAGTGTCGAGTCGGTTTTTGTACTTCTGGCGCGGGCTGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTcc < 5:912969/140‑1 (MQ=255)
aCATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCTGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTcc < 5:204306/140‑1 (MQ=255)
ttGTTTTTAGTGTAGAGTCGGTTTTTGTTAATCATGCGCGGTAGGTTTGGGATTAGTAAATGTGTAGT‑GGCATA‑AAATCGCGGCAACACGGACGTTCTCGATTATATCTTAAAGCTACATTTCCAGATATTCCAGAtctt > 6:594287/1‑140 (MQ=255)
ttGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtc < 2:67523/138‑1 (MQ=255)
ttGTTTTTAGTGTAGAGTCGGGTTTTTTACTTGTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGCCGGAAAAGATGATCTCTTCAAGGGACATTTAAAGCTCTTACAGAta > 2:39146/1‑137 (MQ=255)
ttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATATCAAGCTCTTCCTGAtcttcgtctt < 6:386916/140‑1 (MQ=255)
gtgtAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGTTGAGCTCTTCAAGCGACATTTCAAGCTCTTCCTGATcttcgtcttcgt < 6:525278/140‑1 (MQ=255)
gtgtAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGGTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATcttcgtcttcgt < 3:1209095/140‑1 (MQ=255)
gtgtAGAGTCGGTTTTTGGACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATcttcgtcttcgt < 5:669169/140‑1 (MQ=255)
gtAGAGGCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTtcgtcg < 4:692895/140‑1 (MQ=255)
cGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAAcc < 1:964772/138‑1 (MQ=255)
ggTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCaa < 3:711963/140‑1 (MQ=255)
ggTTTTGGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGAGCGGCAAGACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAAccc < 1:1189842/138‑1 (MQ=255)
ttGTAGTTCTGGCGCGGTCGGTTGCGGATGAGTAAATGTGTCGT‑GTCATT‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 5:51804/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACTCGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 3:534292/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 3:10724/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 7:1013732/140‑1 (MQ=255)
gTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGGCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGcgcg < 5:277344/140‑1 (MQ=255)
tCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGtt > 3:208356/1‑140 (MQ=255)
tGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGtt > 1:482014/1‑138 (MQ=255)
tGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACAGCGCGATGtt > 1:1228646/1‑138 (MQ=255)
cggtcggtTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGa < 7:414470/140‑1 (MQ=255)
gtcggtTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGa > 2:105728/1‑138 (MQ=255)
gtcggtTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAtc > 7:355124/1‑140 (MQ=255)
gtcggtTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAtc > 4:504563/1‑140 (MQ=255)
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GCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATA‑ACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGATC > NZ_CP022686/1674105‑1674382
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
