Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F36 I0 R1 179 8076.5 8499890 98.3% 8355391 135.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NZ_CP022686 1,674,244 T→G 14.4% T182P (ACC→CCC)  ygfB ← UPF0149 family protein YgfB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0226861,674,2440TG14.4% 245.7 / 9.6 160T182P (ACC→CCC) ygfBUPF0149 family protein YgfB
Reads supporting (aligned to +/- strand):  ref base T (36/97);  new base G (18/9);  total (54/106)
Fisher's exact test for biased strand distribution p-value = 2.09e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 175 total aligned reads displayed.

GCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGATC  >  NZ_CP022686/1674105‑1674382
                                                                                                                                           |                                                                                                                                            
gcgcGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGcggt                                                                                                                                              <  1:44197/140‑1 (MQ=255)
     gcgcTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGtt                                                                                                                                         <  4:388189/140‑1 (MQ=255)
         tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg                                                                                                                                     <  4:2148/140‑1 (MQ=255)
         tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg                                                                                                                                     <  2:395961/140‑1 (MQ=255)
         tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg                                                                                                                                     <  6:336978/140‑1 (MQ=255)
         tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg                                                                                                                                     <  1:769267/140‑1 (MQ=255)
         tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCgg                                                                                                                                     <  4:187743/140‑1 (MQ=255)
         tGCCGGGGTGGATTTGCTCTACAAGGGCCTGTCTGCGACGCTGAAACTCTTGCCGGGATATAGCACTCATAACACTATCCTTAGATTATTTTTTTTTCGTGTAGCGTAGGGTTTTGTACTTCTGGCGCGGTCCGTTGctg                                                                                                                                     <  4:189086/140‑3 (MQ=255)
           gcgtgTTGAATTTGGTCTACGAGGGCCTGACGGCGTCGCTGAATCTCTTGGCGGTATATATCAGTGATATCTCTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGTCTCGGGCGGTTGAGG‑At                                                                                                                                  <  4:945919/136‑1 (MQ=255)
           ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑At                                                                                                                                  <  1:572529/140‑1 (MQ=255)
           ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATAGCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGGGTAGAGTCGGGTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑At                                                                                                                                  <  4:688733/140‑1 (MQ=255)
            cGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATg                                                                                                                                 <  3:475879/140‑1 (MQ=255)
                   cATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTAATTATGGCGCGGTCGGGTTCGG‑ATGA‑GTtaat                                                                                                                         >  1:72299/1‑139 (MQ=255)
                       tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGgtgt                                                                                                                     <  2:60541/140‑1 (MQ=255)
                         ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCg                                                                                                                   <  3:1020720/140‑1 (MQ=255)
                         ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCg                                                                                                                   <  2:914612/140‑1 (MQ=255)
                         ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTAATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCg                                                                                                                   <  1:967480/140‑1 (MQ=255)
                         ctctAAGAGGGCCTGACTGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCATTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCg                                                                                                                   <  4:923971/140‑1 (MQ=255)
                         cgctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCg                                                                                                                   <  6:523125/138‑1 (MQ=255)
                            aaCCAGGTCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑ATAAAGGTGTCGTgg                                                                                                                <  5:703608/139‑1 (MQ=255)
                              ccAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTTCTTCTGGCGCGGGCGGTTGGGG‑ATGA‑TGAAATgtgtgctggga                                                                                                              >  3:532905/1‑133 (MQ=255)
                                  ggCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTAAATCTTGCGCGGTCGGTTTCGG‑ATGA‑GTAAAGGTGTCGTGGGATaaa                                                                                                          >  4:310818/1‑139 (MQ=255)
                                      tGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTATTGTGGCGCGGTCGGTTGCGG‑ATGG‑GTATATGTGGAGTGGCATCACAgcg                                                                                                      >  3:894849/1‑140 (MQ=255)
                                        aCGGCGACTCTGAAACTCTTGCCGGGATATATCACTCATAACAATCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATACCAGcgcg                                                                                                    <  4:559118/140‑1 (MQ=255)
                                        aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTGTGGCGCGGTCGGGTGCGG‑ATGA‑GTAAATGTGTCGTGGCATAACAGcgcg                                                                                                    >  3:46087/1‑140 (MQ=255)
                                        aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTATTATGGCGCGGTCGGTGGGGG‑ATGA‑GTAAATGTGTCGTGGCATTACAGcgcg                                                                                                    >  6:17051/1‑140 (MQ=255)
                                        aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTAGTCTTGGGCGGGGGGTGGGGG‑TTGA‑GGATAGGGGGAGTGGGAGATCAGcgcg                                                                                                    >  5:465566/1‑140 (MQ=255)
                                         cgtcGACGCTGAAACTCTTGACGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCgg                                                                                                   <  3:841702/137‑1 (MQ=255)
                                              aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAaca                                                                                              <  6:1043157/140‑1 (MQ=255)
                                              aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAaca                                                                                              <  4:953038/140‑1 (MQ=255)
                                              aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTCTTGTGGGGCGGGCGGGTGGGG‑ATGA‑GTAAAGGTGTAGTTGGATAACACCGCGGcca                                                                                                >  7:257091/1‑136 (MQ=255)
                                                  tGAAACTCTTGCCGGGATATATCACTCATAACCCTCTCCTTACATTTTTTGTTATTAGTGTAGAGTCGGATTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGAGTCGTGGCATAACAGCGCGGCAACACGGa                                                                                          <  4:725805/140‑1 (MQ=255)
                                                    aaaCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACg                                                                                        <  1:851170/140‑1 (MQ=255)
                                                      aCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTa                                                                                      <  4:454364/140‑1 (MQ=255)
                                                          ttGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTAAGTCTGGCGCGGTCGGTTGGGG‑ATTA‑GTTAAGGTGTCGGGGGATAACCTCGCCGCCACACCGCCGGACTCg                                                                                  >  6:24785/1‑140 (MQ=255)
                                                          ttGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCg                                                                                  <  6:407413/140‑1 (MQ=255)
                                                          ttGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTATTAGTGTAGAGTCGGTTTTTGTAATTATGGCGCGGTGGGTTGCGG‑TTTA‑GTTAATGTGTCGCGGAGAAACAGCCCGGCAACACTGACGAACACg                                                                                  >  1:155077/1‑140 (MQ=255)
                                                             ccGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGGCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatg                                                                               <  2:126930/140‑1 (MQ=255)
                                                                      atCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTTTAGAGTCGGTTTTTGTACTTCTGGCTCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCtt                                                                        <  7:344415/138‑1 (MQ=255)
                                                                      atCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCCTAAAAGCGCGGCAACACGGACGTACTCGATGATCTCTTCa                                                                      >  2:615695/1‑140 (MQ=255)
                                                                          cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCTGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCg                                                                  <  3:862635/140‑1 (MQ=255)
                                                                          cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTCTGGGGCGGTCGGGTGCGG‑ATGA‑GTAAAGGTGTGGTGGCATAACAGCGCGGCAACACGGCCGTACTCGATGATCTCTTGAAGCg                                                                  >  4:526665/1‑140 (MQ=255)
                                                                           tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTACATCTGGGGCGGTCGGGTGCGG‑ATGA‑GTAAATGTGGCGTGGCATAAAAGCGCGGCAAAACGGACGTACAAGATGATGACTTAAAGCGa                                                                 >  2:481536/1‑140 (MQ=255)
                                                                            cATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGGGGGTGGGG‑ATGA‑GGAAAGGTGGAGTGGGATAAAAGCGCGGCAACACCGACGTACTCGATGATCTCTTCAAGCGAc                                                                >  1:334326/1‑140 (MQ=255)
                                                                             aTAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGGTTTTTACGTATGGCGCGGGAGGTTGCGG‑ATGA‑GTTAAGGTGTGGGGGGATAAACGCGCCGCAACACCGCCCTACTCGATGATGTCTTAAAGCGa                                                                 >  8:419427/1‑138 (MQ=255)
                                                                              tAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGAGG‑ATTA‑GGAAATGTGTCGTGGCATAACAGCGCGGACACACGGACGTACAGGATGATAGCTTAAAGAGACAt                                                              >  5:796952/1‑140 (MQ=255)
                                                                               aaCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAAATATTGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCTGGGCAAAAAATCGAGGCAACACCGACGTAATCCATGCTCTCTTCAAGCGAcc                                                               >  8:102589/1‑137 (MQ=255)
                                                                                 cacTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTGCTTCTGGCGCGGTAGGTTGCGG‑ATGA‑GTAAAGGGTTGGTGGGATAACAGCGCGGCAACACGGACGTACTAGATGGTCTCTTGAAGCGACAtt                                                             >  8:847661/1‑138 (MQ=255)
                                                                                    tctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTAATTCTTGCGCGGGCGGGTGAGG‑ATGA‑GTAAATGTGTCGTTGCATAACAGAGCGGCAAAACGGAAGTACTAGATGATCACTTAAATCGACATATCaat                                                        >  2:842292/1‑139 (MQ=255)
                                                                                     ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACTTATGGCGCGGGGGGTTGGGG‑ATGA‑GTAAAGGTGTAGTGGCCTAACAGCGCGGCCACACGGACGTACTCGATGAGATCCTCAAGCGAAATTTCaaac                                                       >  5:87774/1‑138 (MQ=255)
                                                                                     ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTGCTTCGGGCGCGGTCGGGGGCGGCATG‑‑GTAAAGGTGTGGGGGCAGAACAGCCCCGCCACAAGGCCGTACGAGGTGATGACGTCTCGCGACAtttgcagc                                                       >  4:226393/1‑135 (MQ=255)
                                                                                     ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa                                                         <  7:448851/138‑1 (MQ=255)
                                                                                     ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa                                                         <  8:773535/138‑1 (MQ=255)
                                                                                     ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc                                                       <  3:325857/140‑1 (MQ=255)
                                                                                     ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTAGGTTGCGG‑ATGA‑GTAAAGGTGTAGTGGCATAACAGCGCGGCAACACGGACGTACTCGAAGATCTCTTCAAGCGACATTTCAAGc                                                       >  4:648870/1‑140 (MQ=255)
                                                                                     ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTGTTTGTACATAAGGCGCGGTCGGTTGCGG‑AAGA‑CTAAATGTGTGGTGGCCAAACAGCCCCGCCACACGGAACTACTCGGTGATCTCTTCAATCGACATTTCAAGc                                                       >  4:734638/1‑140 (MQ=255)
                                                                                     ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTTAATCTGGCGCGGTAGGGTGTGG‑ATTATGTAAA‑GTGTGTGGGGATAAACCCGCGGCAACACCGTCGTCCTCGAAGAAAAGATCAAGAGACAATTCaacc                                                       >  5:17993/1‑138 (MQ=255)
                                                                                     ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTACTTAAGGCGCGGTCGGGTGCGG‑ATGA‑GTAAATGTGTCGTGGCATAAAAGAGCGGCACCACAGACGTTCTCGATGAAGTATTCAAGAGACAATTGAAga                                                       >  4:926092/1‑139 (MQ=255)
                                                                                     ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTGTGGCGCCGTCGGGTGGGG‑ATTA‑GTAAAGGTGTCGTGGCATAAACGCGCGGCAAAACGGACCTACACGAGGCTCTCGTCAAGCGACATTTAAAGc                                                       >  2:122304/1‑140 (MQ=255)
                                                                                     ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGCCGGACACGATGATCTCTTCAAGAGACCTTTCAAGc                                                       >  2:408602/1‑140 (MQ=255)
                                                                                     ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTAATTAATGCGCGGGCGGTTGCGG‑ATTA‑GATAATATGTCGTGGCATAACCGCGCGGCCACACCGACCTACTCCCTGATCACAACAAACGACAattagatc                                                       >  2:539531/1‑135 (MQ=255)
                                                                                           aCATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTcc                                                 <  2:728138/140‑1 (MQ=255)
                                                                                            cATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCt                                                <  1:1033527/140‑1 (MQ=255)
                                                                                            cATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTACTTCTGGCGCGGTCGGGTGCGG‑AAGA‑GTAAAGGTGTAGGGGCATAACAGCGCGGCAACACCGACGGACGCGAAGATCTCTTCAAGCGACATTTCAAGCTCttgca                                                >  4:21031/1‑137 (MQ=255)
                                                                                              ttttttGTTTTTAGTGTAGAGTCGGTTTTTGTACGTATGGGGGGGGCGGGGTCGG‑ATGA‑GTAAAAGTGTAGTGGCCTAAACGCCCGGCCACCAGGACGTACACGATGATAACATCAAGCGCCATTTCAAGCTCTTccagt                                              >  4:1008970/1‑137 (MQ=255)
                                                                                                  ttGTTTTTAGTGTAGAGTCGGGTTTTGTTCGTCTGGCGCGGTCGGTTGGGG‑ATGA‑GTTAAGGGGTCGTGGGGTAACAGCGCGGCAGCACGGCCGGACGCGATGCTCTCGTCAAGCGACATTTCGAGCGGTTCCGGAtctt                                          >  6:453790/1‑140 (MQ=255)
                                                                                                    gTTTTTAGTGTAGAGTCGGTTTTTTTAATTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGGCGTACTCGATGATATCTTAAAGCGCCATTTAAATCTCTTACTGAtctt                                          >  8:703549/1‑138 (MQ=255)
                                                                                                       tttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtct                                     <  6:277826/140‑1 (MQ=255)
                                                                                                       tttAGTGTAGAGTCGGGTTTTGTACTGCTGTCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGGCGGGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgt                                       <  7:539505/138‑1 (MQ=255)
                                                                                                        ttaggttAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtctt                                    <  1:259462/134‑1 (MQ=255)
                                                                                                        ttAGTGTCTAGTCGGTTTTTGTACTTCTGGCGCTGTCGGGTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtctt                                    <  2:74005/140‑1 (MQ=255)
                                                                                                        ttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtctt                                    <  5:551146/140‑1 (MQ=255)
                                                                                                        ttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtctt                                    <  6:657362/140‑1 (MQ=255)
                                                                                                           gtgtAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATcttcgtcttcgt                                 <  6:1002718/140‑1 (MQ=255)
                                                                                                           gtgtAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATcttcgtcttcgt                                 <  6:687542/140‑1 (MQ=255)
                                                                                                           gtgtAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATcttcgtcttcgt                                 <  1:903740/140‑1 (MQ=255)
                                                                                                             gtAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTtggtcg                               <  4:144124/140‑1 (MQ=255)
                                                                                                             gtAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTtcgtcg                               <  6:829663/140‑1 (MQ=255)
                                                                                                                     ggTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCTCGGCAACACGGACGTACTCGATGAGCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCaa                       <  4:801480/140‑1 (MQ=255)
                                                                                                                     ggTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAAccc                         <  8:158216/138‑1 (MQ=255)
                                                                                                                     ggTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCaa                       <  3:102896/140‑1 (MQ=255)
                                                                                                                     ggTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGGGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCGCTTCCTGATCTTCGTCTTCGTCGTAACCCaa                       <  4:48617/140‑1 (MQ=255)
                                                                                                                          ttGTACTTCTGGCGCGGTTGGGTGCTG‑CTGA‑GTTACGGTGTCGTGGCATAACAGCGCGGCAACCCGGACGTACTCGATGATCTCTTCACGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTCACCCAACTg                    <  8:503429/138‑1 (MQ=255)
                                                                                                                          ttGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg                  <  1:418497/140‑1 (MQ=255)
                                                                                                                          ttGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg                    <  7:337546/138‑1 (MQ=255)
                                                                                                                          ttGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg                    <  7:703437/138‑1 (MQ=255)
                                                                                                                          ttGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg                    <  7:869568/138‑1 (MQ=255)
                                                                                                                            gTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGcgcg                <  3:713033/140‑1 (MQ=255)
                                                                                                                            gTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGGCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGcgcg                <  5:844860/140‑1 (MQ=255)
                                                                                                                            gTACTTCTGGCGCGGGCGGTTGCGG‑AGGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCATCTGcgcg                <  4:580136/140‑1 (MQ=255)
                                                                                                                            gTACGTCTGGCGCGGTCCGTTGCGG‑AAGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACAATTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGcgcg                <  5:621720/140‑1 (MQ=255)
                                                                                                                                    ggCGCGGTCGGTTGCGG‑ATGA‑GTAAACGTGGCGGGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCTAGCGACATTGCAAGCTCTTCCTGAGCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTa          <  7:78582/138‑1 (MQ=255)
                                                                                                                                     gcgcGGTCGGTTGCGG‑ATGA‑GAAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGc       >  6:639843/1‑140 (MQ=255)
                                                                                                                                        cggtgggtGGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAAGAGGGACTTACTCGATGATCTCTTCAAGCTACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCa      <  8:885616/138‑1 (MQ=255)
                                                                                                                                        cggtcggtTGCGG‑ATGA‑GTAAAGGGGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGa    <  4:192998/140‑1 (MQ=255)
                                                                                                                                          gtcggtTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGcgcg                                                                                                    <  5:485967/42‑1 (MQ=255)
                                                                                                                                          gtcggtTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAtc  >  3:283220/1‑140 (MQ=255)
                                                                                                                                          gtcggtTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAtc  >  5:368902/1‑140 (MQ=255)
                                                                                                                                          gtcggtTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTAGATGATCTCTTCATGCCACATTTCAAGCACTTCATGAGATTCGTCTTCGAGGAACCCCAACTGCGCGAGGTTACGCTGAtc  >  4:761402/1‑140 (MQ=255)
                                                                                                                                          gtcggtTGCCG‑ATGA‑GTAAAGGTGACGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTAATCAAGCGACATATCAAGCTCTTCCTGAAGTTCGTCTTCGGCGTTACCCACCTGCGCGATGTTACGCAGAtc  >  6:604399/1‑140 (MQ=255)
                                                                                                                                           |                                                                                                                                            
GCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGG‑ATGA‑GTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGATC  >  NZ_CP022686/1674105‑1674382

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A