Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F13 I0 R1
|
203 |
11425.2 |
8793538 |
98.4% |
8652841 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,674,244 |
T→G |
11.9% |
T182P (ACC→CCC) |
ygfB ← |
UPF0149 family protein YgfB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,674,244 | 0 | T | G | 11.9%
| 310.6
/ 6.5
| 183 | T182P (ACC→CCC) | ygfB | UPF0149 family protein YgfB |
| Reads supporting (aligned to +/- strand): ref base T (32/122); new base G (18/9); total (52/131) |
| Fisher's exact test for biased strand distribution p-value = 4.49e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 196 total aligned reads displayed.
CGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGATC > NZ_CP022686/1674106‑1674382
|
cgcgGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGGAGAGTCGGTTTTTGTAGTTGTGGCGcggtg > 1:914954/1‑139 (MQ=255)
cggcgCTGCCGGGTTGCATTTGCTCTACCAAGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTCTTGTTGGGcggtg > 3:175809/1‑137 (MQ=255)
ctcTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTg < 7:724045/138‑1 (MQ=255)
cgcTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTg < 5:148426/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 1:110808/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 8:379138/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 5:341636/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 5:946378/140‑1 (MQ=255)
ggCCGGGTTGCATTTGCTATACCAGGGCCTGACGGCGACGCTGAAACTCTAGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 6:719780/139‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGAt < 8:920861/140‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGAt < 5:295387/140‑1 (MQ=255)
ttGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTa < 6:913627/140‑1 (MQ=255)
tGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTaa < 7:210866/140‑1 (MQ=255)
gCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTGTTAGTGGGCGGGGGGTTGGGGATGAGtt > 4:1104287/1‑137 (MQ=255)
gCATTTGCTCTACCAGGGCCTAACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTa < 3:216119/138‑1 (MQ=255)
aaTTTGCTCTACCCGGGCCTGACGGCGACGCTGAACCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAg < 8:787117/139‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTTTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 6:228221/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATTAGTAAAGGTGTCg < 2:142147/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 4:946705/138‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 1:200371/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 2:232679/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 6:1052403/140‑1 (MQ=255)
tctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTATGGCGCGGTCGGTTGCGGATGAGTTAAGgtgtg > 3:692491/1‑137 (MQ=255)
aCCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTTCATCTGGCGCGGTCGGTTGCGGATGAGTAAATGTGTCGT‑GGc > 8:502874/1‑140 (MQ=255)
ggCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGGACTTATGGCGCGGTGGGTTTCGGATGTGTAAACGGGGAGT‑GGCATaaa > 8:287156/1‑139 (MQ=255)
gCCTGACGGCGACGCTGAATCTCTTGCCGGGATATATCACTCATAACACTCTCCTGACATTTTTTGTTTTTAGTGTAGAGTCGGGGTTTGGCCGTAGGGCGGGGTCCTGTGGGGATTAGTTAAGGTGTCGT‑TGccttccc > 5:102293/1‑134 (MQ=255)
gCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCATTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAATTCTGGGGCGGTGGGTTGCGGATGAGTAAAGGTTTCGT‑TGCATaaaa > 2:613414/1‑138 (MQ=255)
ccTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAAc < 3:337951/138‑1 (MQ=255)
tGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTACTTCTTGCGCGGTCTGTTGCGGATGAGTAAAGGTGTCGT‑TGCATAACAgcg > 2:687678/1‑140 (MQ=255)
tGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACGTATGGGGGGGTCGGTTGCGGATGAGTTAAGGTGTCGT‑GGCATTACcgcg > 2:779595/1‑140 (MQ=255)
tcGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAATTCTGGGGACGACCGGTGTGGAAGAAATAAGGTGTCGT‑GGCATAACcgcgcg > 6:641115/2‑140 (MQ=255)
aCGGCGACGCTGAAACTCTTGCAGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTGTGGGGCGGGCGGTTGCGGATGAGTAAAGGGGTCGT‑GGCATAAAAgcg > 4:1055285/1‑138 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCgg < 5:854966/140‑1 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCgg < 1:659895/140‑1 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCgg < 1:712235/140‑1 (MQ=255)
aCGCTGATACTCTTGCCGGGATATATCACTCATAAAACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAaca < 1:61198/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGTGAAATATCACTCATAACACTCTCCTTTCATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCaa < 4:1010846/138‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTATAGGTGTCGT‑GGCATAACAGCGCGGCAaca < 5:118684/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCaa < 3:1104287/138‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAaca < 2:1032156/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAaca < 7:259705/140‑1 (MQ=255)
tGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGa < 8:728851/140‑1 (MQ=255)
aCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTa < 5:903942/140‑1 (MQ=255)
ttGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTAGTTATTGCGGGGGGGGTTGGGGGTTGGTAAAGGTGTGGTGGGCTTAAC‑GCGCGGCACCACCGGCGTTCTCg > 2:189661/1‑140 (MQ=255)
gCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAATTCTGGCGCGGGCGGTGGGGGATGAGGAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACCGACGTACTCgat > 1:896034/1‑140 (MQ=255)
gCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTTATTATGGGGCGGTCGGTTTGGGATTAGTAAATGTGTAGT‑GGCATAACAGCGCGGCCACAAGGACGGTCTCgat > 7:16522/1‑140 (MQ=255)
gCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTATTCTGGGGCGGGCGGGTGCGGAGGAGTAAATGTGTCGT‑GGGCTAAAAGCGCGGGAACACGGACGTaaagtct > 1:1074398/1‑134 (MQ=255)
cGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCgatga < 7:87633/140‑1 (MQ=255)
gggATCTATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTAGT‑GGCATAACAGCGCGGCAACACGGACGTACTCgatgat < 6:354063/140‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCgatgat < 6:914690/140‑1 (MQ=255)
ccTCATAACACTCTCCTTACATTTTTTGTTTTTAGCGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGc < 2:240322/139‑1 (MQ=255)
cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAg < 4:415463/138‑1 (MQ=255)
cTCATAACACTCTCCTTAAATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGGTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCg < 2:319153/140‑1 (MQ=255)
cATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAAGTGTCGT‑GGCATAACAGCGCGGCAACCCGGACGTACTCGATGATCTCGTAAAGCgcc > 2:300261/1‑138 (MQ=255)
aaCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTACTTATGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGGATAACAGCGCGGCAAAACGGACGTACTAGAAGATCTATTAAAGCGCCAtt > 5:504653/1‑140 (MQ=255)
cctctCCATACATATTTTGTATTTAGTGTAGAGTCTGTTTTTGTCCTTCTGGCGCGGTCGCTTGCGGATGAGTAAAGGCGTCGT‑GGCATAACAGCGCGTCAACACGGCCGTACTCGATGATCTCTTCAAGCGACAttt < 4:88910/137‑1 (MQ=255)
acTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCa < 6:1029251/140‑1 (MQ=255)
tctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GTCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAg < 1:749763/140‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 1:449220/140‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTCTGGCGCGGGGGGGTGCGGAAGAGTAAAGGTGTAGT‑GGCATAAAAACCCGGCAACACCGCCGTACACGATGATCTCTTCAAACGGCAATTaaatc > 2:917787/1‑138 (MQ=255)
atcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑TGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 6:765355/139‑1 (MQ=255)
tcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTATGGCGCGGTGGGTTGGGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGCCGTACACGATGATGTCTTAAAGCGCCATTTAAAg > 3:787299/1‑138 (MQ=255)
tcCTTACATTTTTTGTTTATAGTGTAGAGTCGGTTTTTTTAATTATGGCGCGGGAGGTTGCGGCTTAGTAAAGGTGGCGT‑GGGATAAAGGGCCGGGAACCCGGACGGACGAGATGATATCTTCAAGCGCCAATTGAAg > 4:714692/1‑138 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACATCTGGCCCGGGCGGGTGCGGAGGATTAAAGGTGTCGT‑GGCATAACACCGCGCCAACACCGACGGAATAGATGATCTCTTCAAGCCACATTTAAAGc > 3:815671/1‑138 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTAGT‑GGCATAACAGCGCGGCCAACCGGACGTACTAGATTATCTCTTCAAGCGACATTTCAAGc > 4:464769/1‑138 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTAAGGCGCGGTCGGTTGCGGAAGATGAAAGGTGTCGT‑GGCATAAAAGCGCGGCAACACGGACGGACTCGATGATCTCTTCAAGCGACATTTCAAggac > 2:422024/1‑137 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAATTATGGCGCGGTCGGTTGCGGATGAGGAAATGGGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACGAGCTGATCTAGTACAGAGACATTTAAAgata > 6:86620/1‑137 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAATTATGGCGCGGGCGGTTGCGGATGAGTAAATGTGGCGT‑GGCATAAAAGCGCGGCAACACGGACGGACTCGAAGATATATTCAAACGACATTTCAAGc > 4:649233/1‑138 (MQ=255)
ttACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGGGGAGGTGGAAATGTGTCGT‑GGCATAACAGCGCGGGCACACGGACGGACTCGATGTTCTCTTCAAGCGACATTTGAAGctg > 4:221972/1‑137 (MQ=255)
ttttGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCCGGCGCGGGCGGGTGCGGATGAGTAAAGTTGGCGT‑GGCATAACAGCGCGGCCACACCGACGTACTCGATGCTCTCTTCAATCGACATTTCAAGCTCTTCCTGa > 4:781876/1‑138 (MQ=255)
ttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtctt < 1:25071/140‑1 (MQ=255)
gtgtAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATcttcgtcttcgt < 5:415498/140‑1 (MQ=255)
tCGGGTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAATGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTAAAGCTACATTTCAAGCACTTACTGATATTCGTCTTCGTCGTAAccc > 2:650985/1‑140 (MQ=255)
gcGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAAccc < 2:12936/139‑1 (MQ=255)
cGGGTTTTGTACTTCTGGCGCGGGCGGGTGCGGATGAGTAAAGGCGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCa < 6:596484/140‑1 (MQ=255)
ggTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCaa < 7:502874/140‑1 (MQ=255)
ggTTTTTGGACATCTGGCGCGGTCGGTTGCGGATTAGTAAATGTGTCGT‑GGCATAACAGCGCGGCATCACGGACGTACTCGATGAACTCTTCAAGCGTCATTTCAAGCTCTACCTTATCTTCGTCTTCGTCGTAACCCaa < 1:376215/140‑1 (MQ=255)
ttGTAGTTCTGGCGCGGTCGGTTGCTGATGAGTAAAGGTGTCGT‑GGCATAACAGCTCTGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGTTCTTCGTCTTCGTCGTAACCCAACTgcg < 7:459200/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 7:385387/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 2:1060663/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 2:216434/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 7:966137/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 3:581527/138‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTGGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 7:601350/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGGTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 1:1033776/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 4:350091/138‑1 (MQ=255)
gTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGTTGTCGT‑GGCATAACAGCGCGGCTACACGGACGTACTAGATGATCGCTTCAAGCGACATTTCAAGCTGTTCGTGATCTTCGTCTTCGTCGTAACCCAACTGctcg < 2:1079640/140‑1 (MQ=255)
gTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGcgcg < 1:625655/140‑1 (MQ=255)
tcTTCTGGCGCGGTCGGTTGCGGATGAGTTAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGAt < 7:287156/139‑1 (MQ=255)
cTTCTGGCGCGGTCGGTTGCGGATGAGTATAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATg < 1:407438/140‑1 (MQ=255)
ggCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTa < 3:649233/138‑1 (MQ=255)
ggCGCGGTCGGTTGCGGATGAGTAAAGGGGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACg < 6:309459/140‑1 (MQ=255)
gcgcGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGc < 5:37832/140‑1 (MQ=255)
gcgcGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGc > 5:572411/1‑140 (MQ=255)
gtcggtTGCGGATGAGTAAAGGTGTCGT‑GGCATaa < 6:651691/35‑1 (MQ=255)
gtcggtTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAaca < 5:755349/48‑1 (MQ=255)
gtcggtTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTACCCCAACTGCGCGATGTTACGCAGAtc > 6:1069383/1‑140 (MQ=255)
gtcggtTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAtc > 1:968475/1‑140 (MQ=255)
gtcggtTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAtc > 5:988376/1‑140 (MQ=255)
gtcggtTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTACAAGCGACATTACAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACATCTCGATGATCCGCAGAtc > 8:124753/1‑140 (MQ=255)
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CGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGT‑GGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGATC > NZ_CP022686/1674106‑1674382
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
