Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A30 F36 I0 R1
|
275 |
10897.2 |
10515506 |
98.4% |
10347257 |
135.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,674,244 |
T→G |
14.7% |
T182P (ACC→CCC) |
ygfB ← |
UPF0149 family protein YgfB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,674,244 | 0 | T | G | 14.7%
| 319.7
/ 19.1
| 221 | T182P (ACC→CCC) | ygfB | UPF0149 family protein YgfB |
| Reads supporting (aligned to +/- strand): ref base T (53/131); new base G (25/12); total (78/143) |
| Fisher's exact test for biased strand distribution p-value = 1.76e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 231 total aligned reads displayed.
GCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGATC > NZ_CP022686/1674105‑1674382
|
gcgcGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGcggt < 7:467805/140‑1 (MQ=255)
ctcTGCCGGTATGCATTTGCTCTACCAGGGACTGACTGCGACGATGAAACTCTTGCAGGGATATATAACTCATAACAATCTCCATCCATTTTTTTTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTg < 8:287751/138‑1 (MQ=255)
cgcTGCCGTGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACTCTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGcggtcggt < 4:274706/138‑1 (MQ=255)
cgcTGCCGGGTTTCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGcggtcggt < 2:1207693/138‑1 (MQ=255)
cTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTGACTTATGG‑CGCGGGCGGTTGCg > 8:209904/1‑140 (MQ=255)
tggcGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGTGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCgg < 7:1001974/137‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGc < 4:1271998/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTATTGTACTTCTGG‑CGCGGTCGGTTGCgg < 7:863184/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTAACCGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCAGTCATAACACTCTCCTTAAATTTTTTGTTTTTAGTGTAGAGTCTGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCgg < 7:215059/140‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCgg < 1:790973/138‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCgg < 1:847730/138‑1 (MQ=255)
gCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATCTATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTa < 2:931344/138‑1 (MQ=255)
tGCTCTACCAGTGCCTGACGGCGACGCTGAAACTCTTGCCTGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTGTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGgtgt < 6:297429/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACTGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCTGATGAGTAAAGgtgt < 8:850088/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGgtgt < 5:214906/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGgt < 4:727182/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGgt < 4:820371/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGgt < 3:496861/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGAGGATGAGTAAAGgt < 4:646225/138‑1 (MQ=255)
gtctctACCCGGGCATGGCGGCGACGCTGAAACGCTTGCCGGGATACATCACTCATAAGACTCTACTTACATTTTTTGTTTTTAGTGGAGAGTCGGTTTTTGTACTTCTGG‑CTCGGTATGTTGCTGATGAGTAAAGgt < 3:778908/136‑1 (MQ=255)
gtcgcaaCCAGGGCCGGACGTCTACGCTTAAACACTTGCCGGTTTATCTCCCTCATAACACTCTCCTTACATTTTTTGTTTTTATTGTAGAGTCTGTTTTTGTACTTCTGG‑CGCGGTCGGTGTCGGATGAGTAAAGgtgt < 6:65487/134‑1 (MQ=255)
gCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTCTTATGG‑GGCGGGGGGTTGGGGGTTTGTTAAGgtgtg > 5:371967/1‑139 (MQ=255)
ctctACGAGGGCCTGACGGCGACGCTGAATCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTAGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 5:1041829/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCTTAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGgtgt < 2:189423/138‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGgtgt < 2:154024/138‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 6:25979/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 7:754952/140‑1 (MQ=255)
cAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACTTCTGT‑CGCGGGCGGGTTCGGATTAGTTAAGTTGTCGTggg > 2:346273/1‑137 (MQ=255)
aGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGGTGCGGATTAGTAAAGGTGTCGTGGcc > 2:1030465/1‑137 (MQ=255)
ggCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTTCTTGTGG‑GCCGGGGGGTTGGGGATGAGGAAATGTGTAGTGGGCTAAc > 7:519685/1‑140 (MQ=255)
ccTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAAc < 4:1061586/138‑1 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCTGTTTTTTGACTTCTGG‑CGCGGTGGGTTGGGGATGAGTAAAGGTGTCGGGGCATTACacaggg > 8:307854/1‑135 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTTAATATGG‑CGCGGTCGGGTGCGGTTGAGTAAAATTGTGGTGGGATAACAgcc > 1:1010785/1‑137 (MQ=255)
cGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGGAGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGc < 3:841950/138‑1 (MQ=255)
ccGCTGCAACTCTAGCCGGGAACTATCACTCATAACACTCTCCTTACATTTTATGTTTTTAGTTTAGAGTCGTTGTTTGTACTTCTGG‑CGCGGGCGGGTGCGGATGAGTAAAGGTGTCGTGGCATTACAGCGCGGCAaca < 8:626009/139‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCGCCTAACATTTTTTGTTTTTAGTGTAGAGTCGGTATTTGTACTTCTGG‑CGCGCTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCaa < 1:442962/138‑1 (MQ=255)
cGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAATTGTGG‑GGCGGTGGGGTGGGGGTGAGTAAAAGTGTGGTTGGATAAAAGCGCGGCAac > 1:524904/1‑138 (MQ=255)
cTGAAACTCTGGGCGGGATATATCACTCATAACACTCTCATTACATTTTTTGTTTTTAGTGTAGATTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACgg < 8:46323/140‑1 (MQ=255)
tGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGa < 7:1135860/140‑1 (MQ=255)
aaCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGAc < 3:580794/138‑1 (MQ=255)
aCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACg < 4:406775/138‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatgat < 8:1026460/140‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatgat < 6:347125/140‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatg < 4:38154/138‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGGCGGTTGCGGATGAGTAAAGGTGTCGGGGCATAACAGCGCGGCAACACGGACGTACTCgatg < 1:335801/138‑1 (MQ=255)
gggATATATCACACATAACACTCTCCTTTCATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGGTGCTGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatg < 3:121392/138‑1 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTTCTTATTG‑GGCGGTGGGTTGGGGATGAGTAAATGTGTCGGTGCATAACAGCGCGGCCACCCCGAAGGTCACGATTATCTCTTAAAGCgc > 8:358538/1‑139 (MQ=255)
aTAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTTCTTATGG‑CGCGGGCGGTTGCGGATGAGGAAAGGTGTCGGGGCATAACAGCGCGGCACCCCGGACGTACTCGATGATCTCTTAAAGCgc > 4:1140462/1‑137 (MQ=255)
aTAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTCTTCTGG‑CGCGGTCGGTTGGGGATGAGTAAAGGTGTCGTGGCATAAAAGCGCCGCAACACCGACGTACTCGATGATATCTTAAAGCgg > 4:848216/1‑137 (MQ=255)
aaCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACTTATGG‑GGGGGGCGGGTGGGGTTGAGTTAATTTGTAGGGGGAAAAAAGCGCGGCAAAACGGCCGTAAACGTTGATAGCTTAAAGCGACAtt > 8:1182566/1‑140 (MQ=255)
aaCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTCTGG‑GGCGGTCGGTTGCGGATGAGGAAAGGTGTGGTGGGATAAAAGCGCGGCAACACGGACGTACTCGATGCTATCGTCAAGCGACa > 4:58778/1‑138 (MQ=255)
acacTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGG‑CGCTGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACAt < 3:181081/138‑1 (MQ=255)
cacTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTAATTATGG‑CGCGGTAGGTTGCGGATGAGTAAAGGTGTAGTGGGATAAAACCGCCGCAAAACCGACGTACTCGATGATAAATTGAAGCGACAtt > 2:1301383/1‑138 (MQ=255)
acTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCTGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCa < 6:341333/140‑1 (MQ=255)
acTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACAttt < 4:144925/138‑1 (MQ=255)
tctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGACGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCa < 2:3215/138‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTTCTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGGGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa < 3:148994/138‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTTCGTCTGG‑CGGGGTAGGGTGGGGGGGAGTTAAGGTGTGGTGGCATTAAAGCGCGGCCACACGGCCGGTCTCGGTGATCGCTTGAAGCGTGATTTCAAGc > 6:794094/1‑140 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 6:428292/140‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGAGGGCGTTTGCGTATGAGTAAAGGTGTCGTGTCATAACAGCGAGGCAACACGGAAGTACTCGATGATCTCTTCAAGCGACATTTCaa < 3:653874/138‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCGGG‑CGCGGTCGGGTGCGGCTGTGGAAAGGTGTCGTTGCATTACAGCCCGGCACCACGGAACTACTCGAAGATCGGGTCAAGCGACAATTAAAGc > 8:506554/1‑140 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTTCTTCTGGACGC‑GTCGGTTGCCGATGAGTTAAAGAGTGGAGGCATAAAAGCGCGGCAAAACGGACGTACTCGAAGTTCTCTTCAAGCGACATTTaaaac > 6:116616/1‑138 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTTCTTCTGG‑CGCGGGAGGGTTCGGATGAGTAAATGTTTGGTGGAATAAAAGAGCGGCAACACGGCCGGAAAAGAAGATATCATCAAGCCACAtttaacac > 5:70894/1‑135 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGGACTTCTGG‑CGCGGTCGGGTGCGGATGAGTAAAGGTGTCGTGGCCTAACAGCCCGGCCACACCGACGTACGAGATGATCTCTTCAATCGCCATTTCAAgg > 8:412970/1‑139 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACTTGAGG‑CGCGGTACGTTGAGGATGAGTAAAGGTGTCGTGGCATAAAACCGCGGCAAACCCGCCGTACTCGAAGATCTCATGAACCGCCCTTTAAAGc > 4:1038101/1‑138 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCCGGCGGTTGGGGATGAGAAAAGGTGTCGGGGCAATACAGCTCCGCCACACGCCCGTACTCGCTTATATGAGAAAGCGACATTACaaac > 4:178612/1‑136 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTTATTCTTT‑CGCGGGAGGGTGCCGATGTGTAAAAGTGTCGTGGGAAAACAGCGCGGCACAACCGCCCTACACGATGATCTCATCAACCGACATTTaaatc > 2:386428/1‑136 (MQ=255)
cTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTACGTATGG‑CGCGGTCGGGTGCGGTTGTGTTAAGGTGTCGGGGCATAACACCGCGGCACCACGGACGTACTCGATGATCTGTTAAAGCGACATTTAAAGctgt > 6:1117585/1‑138 (MQ=255)
aCATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCtt < 3:32122/138‑1 (MQ=255)
ttttGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑GGCCGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCAAAACAGCGCCGCAAAACCGACCAAATCCTTGATATCTTAAATCGACATTTTAACCTCTTACTGa > 4:611970/1‑138 (MQ=255)
tttGTTTTTAGTGTAGAGTCGGGTTTTTTTCTTCTGG‑GGCGGTGGGGTGCGGATGTGTAAAGGGGTAGTGGCAAAAACGCGGAGCCACACGGCCCTAAACGATGAGAGATTCAAGCGACAATTAAAGCTCATCCTGAtat > 8:548965/1‑138 (MQ=255)
ttGTTTTTAGTGTAGAGTCGGTTTTTGTTCTTGTGG‑GGCGGTGGGTTGGGGATGTGTTAAGGTGTGGTGGGATAACAGCGCCGCAACACGGACGTACGCGATGATCTCTGAAAACGCCATTTCAAGCTAGTCCTGAta > 2:1234400/1‑137 (MQ=255)
ttGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtc < 1:730187/138‑1 (MQ=255)
ttGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCAGG‑CGCGGTGGGTTTCGGATGAGGAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGCCGTACTCGATGATCTCTTAAAGCGGCATTTAAAGCTCTTACAGAtc > 1:626834/1‑138 (MQ=255)
tttAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgt < 3:1312152/138‑1 (MQ=255)
ttAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCTGTTGAGGATGAGTAAAGCTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtctt < 8:594101/140‑1 (MQ=255)
gagTCGGTGTTTGATCTTCTGG‑AGCGGTCGGTTGCGCATGAGGAAAGGGGTCGTGGCAATACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTACTGATCTTCGTCTTCGTCGTaa < 7:802164/140‑1 (MQ=255)
gggttttttAATTATGG‑GGCGGTAGGTTGCGGCTTATTAAATGTGTCGTGGCCTAACAGCGCGGCAACACGGGCGTAAAAGAGGATAACTTAAATCGGCAATTCAAGGAAATCCTGAGAATAGTCTTCGTACGAACCCaa > 8:796669/4‑140 (MQ=255)
gggttttGTACGTCTGG‑GGCGGGCGGGTGGGGCTGAGGTAAGGTGTGGTGGCATTACAGCGCGGGGACCCGGCCGGACTCGTTGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCGTGGTCTTCGTCGTATccc > 4:496316/4‑138 (MQ=255)
ggTTTTTGTCCTTCTGG‑CGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAAccc < 1:141315/138‑1 (MQ=255)
ggTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAAccc < 1:402257/138‑1 (MQ=255)
ggTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCCCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAAccc < 1:1171385/138‑1 (MQ=255)
tttttGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACt < 6:355311/140‑1 (MQ=255)
ttGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 6:763434/140‑1 (MQ=255)
ttGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 8:892425/140‑1 (MQ=255)
ttGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 8:26268/140‑1 (MQ=255)
ttGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 2:630369/138‑1 (MQ=255)
ttGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 2:1008587/138‑1 (MQ=255)
ttGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 1:226405/138‑1 (MQ=255)
ttGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAAATgcg < 5:4247/140‑1 (MQ=255)
ttGTACTTCTGG‑CGCGGTCGGGTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 1:1234400/138‑1 (MQ=255)
ctACTTCTGG‑CGCGGTCTGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCTCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGTCATTTCAAGCTCTTCCTGATCTTCGGCTTCGTCGTAACCCAACTgcg < 2:457956/137‑1 (MQ=255)
cTTCTGG‑CGCGGTCGGTTGCGGATGATTAAAGGTGGCGTGTCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATg < 5:97163/140‑1 (MQ=255)
tCTGG‑CGCGGTCGGTTTCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAACTTCGTCTTCGTCGTAACCCAACTGCGCGATg > 2:84422/1‑138 (MQ=255)
tCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGtt > 5:489190/1‑140 (MQ=255)
tGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGtt > 2:534756/1‑138 (MQ=255)
cgcgGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACg < 2:685825/138‑1 (MQ=255)
gtcggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAtc > 6:1029012/1‑140 (MQ=255)
gtcggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAtc > 6:172657/1‑140 (MQ=255)
gtcggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAta > 7:1072706/1‑139 (MQ=255)
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GCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGG‑CGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGATC > NZ_CP022686/1674105‑1674382
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
