Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A26 F2 I0 R1
|
64 |
5414.3 |
5027226 |
98.2% |
4936735 |
134.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,674,248 |
T→G |
16.8% |
Q180H (CAA→CAC) |
ygfB ← |
UPF0149 family protein YgfB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,674,248 | 0 | T | G | 16.8%
| 156.6
/ 13.3
| 101 | Q180H (CAA→CAC) | ygfB | UPF0149 family protein YgfB |
| Reads supporting (aligned to +/- strand): ref base T (22/60); new base G (16/3); total (38/63) |
| Fisher's exact test for biased strand distribution p-value = 5.78e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 105 total aligned reads displayed.
CGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGATC > NZ_CP022686/1674111‑1674382
|
cgcTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCTGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTg < 5:23770/140‑1 (MQ=255)
cTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCATTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTACATCTGGCGCGGGGGGTTg > 4:611793/1‑138 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 3:180877/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 5:509979/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 5:146984/140‑1 (MQ=255)
ggCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 3:542859/137‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 7:530700/138‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 2:41184/138‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 1:375094/138‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGAt < 6:444642/140‑1 (MQ=255)
ggggTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGa < 1:395504/137‑1 (MQ=255)
cGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGa < 3:303293/138‑1 (MQ=255)
ttGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATACCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTTCTTGTGGGGGGGTCGGGGGGGGGTGAGtt > 5:229301/1‑139 (MQ=255)
tggtctACCAGTGCCGGACGGCGACGCTGAAACTCTTGCCGCGTAATATAACTCCAAAGACTCTCCTATCTTTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTACTTCTCGCTCGGGCGGTTGCGGTTGTGTAAAGgt < 8:1219/135‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGTCGCTGAAACTATTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCTCGGTCGGTTGCGGATGAGTAAAGgt < 4:268268/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTTCTTATGGCGCGGTCGGTTGGGGATGAGTAAAGgt > 1:116284/1‑138 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 5:26420/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 4:112395/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 4:161576/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 2:296870/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 2:293926/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 2:196711/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGgt < 8:1218/138‑1 (MQ=255)
ctctCCCAGGGACTGACGGCGTCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑TGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 5:459917/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 6:32135/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 7:531629/138‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 1:333319/138‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 6:268171/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 5:490203/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTACTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 5:420838/140‑1 (MQ=255)
cAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTTTTGGTAGTGCGCGGGCGGGTGGGGTTGAGTTAATGTGTCggggg > 7:128644/1‑137 (MQ=255)
cAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTATTGCGCGGTCGGTTTGGGATGTGTTAATGTGTAGTGGc > 8:160425/1‑138 (MQ=255)
ggCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTACTTCTTGCGCGGTCGGGTTCGGTTGATTAAAGGTGTCGGGGCATaaa > 6:414103/1‑139 (MQ=255)
gCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACAGTTTTTGTTTTTAGTGTAGAGTC‑GGTTGTTGTAGTTGTGGGGCGGGAGGGTGGGGATGTTGTAAGGTGTGGGGGCATaccc > 6:550385/1‑137 (MQ=255)
ccTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAAc < 1:178444/138‑1 (MQ=255)
ccTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAg < 5:414103/140‑1 (MQ=255)
cTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTTCTTCTGGCGCGGGAGGGTGGGGATGAGTAAAGGTGTCGTGGGAGAACa > 4:594923/1‑138 (MQ=255)
accgCGACGCTGAAACTCTTGCCGGGATATATCACACATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTAAATATGGCGCGGTGGGTTGGGGATGAGTTAAAGTGTCGTGGCATAACAgcc > 4:618819/4‑137 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTATAGTC‑GGTTTTTTTAATTCTGGCGCGGTCGTTTGGGGATTAGTTAATGTGTCGTGGGATACCcgcgcg > 6:80085/1‑140 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTTTACTTCTGGCGCGGTCGGGTGCGGCTGAGTTAATGTGTCGTGGGATAACcgcg > 4:613629/1‑138 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAgcgc < 1:247516/138‑1 (MQ=255)
ggCGCCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGGTTTGTTCTTCGGGGGCCGTCGGTGTCGGTTGAGTAAAAGTGTGGGGGGCTAACAGcgcg > 7:502650/1‑138 (MQ=255)
ggCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTGT‑CTTCTGGGGCGGTCGGTTGGGGAGTATTAAATGTGGTGTGGGAGAAAcgcgcg > 4:227443/1‑138 (MQ=255)
aCGCTGTAACTCTTGCCGGTATATATCACTCATAACACTCTCATTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACATCTGGCGCGGTCGGTTGCGGATGAGTACAGGTGTCGTGGCATAACAGCGCGGCaa < 7:249919/138‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTTTAAATGTGGCGCCGTCGGGTGGGGATGAGTAAACGTGTCGGGGCATAACAGCGCgggcc > 3:629125/1‑135 (MQ=255)
tGAAACTATTGCCTGGATATTTCACTCCTAACACTCTCATTACATTTTTTGTTTTTAGTGTAGTGTC‑GGTTTTTGGACTTCTGGCGCGGTCGGGTGCGGTTGAGTAAAGGTGTCGTGGAATTACAGCGCGGCAACTCg < 4:3778/138‑1 (MQ=255)
aaaCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGa < 3:392122/138‑1 (MQ=255)
ttGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTAGTTCTGGCGCGGTCGGTTGCGGATGAGTAAACGTTTCGTGGCATATCAGCGCGGCAACCCGGACGTACTcc > 6:251324/1‑139 (MQ=255)
gCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTTCTTATTGCGCGGTCGGTTGCGGATGAGTTAATGTGTCGTGGCATAACAGCGCGGCAACACGGCCGTAATCg > 3:206313/1‑138 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTTGCATAACAGCGCGGCAACACGGACGTACTCgatg < 7:160425/138‑1 (MQ=255)
tatatCAGTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCAGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATctct < 5:293651/140‑1 (MQ=255)
tCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTc < 1:612326/138‑1 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGAGGGCGGTTGAGGGAGAGGAACGGGGGCGTGGCATAACCTCGCGGGCACACTGACGAGATCGCTGATCGCATCAACCGa > 6:188342/1‑140 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTTCTTCTGGCGCGGGCGGGTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCCACCCGGCCGGACTCGATGATCGCTTCAAGCgc > 6:387178/1‑139 (MQ=255)
acATACCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTGCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGc < 4:114610/137‑1 (MQ=255)
aTAACACTCTCCTTACATTTTTTGTTTTTAGTGTCGAGGA‑GGTTTTTTTACTTCTGGGCCGGTCGGGTGATGATGAGTAAATGTGTGGTGGCATAACAGCGCGGCACCACGGACCTCAGAGATGATCTCTTccggcgc > 2:519124/1‑132 (MQ=255)
aTAACACTCTCATTAAATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTTATTTTTTCGCGGTCGGGTGCGGAAGATAAAAGGTGTAGTGGCATAACACCGCTGCCACACGGACGTACACGACGAACTCTTCactctacc > 6:399649/1‑133 (MQ=255)
aaCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTACTTCTTGGGCGGTCGGTTGCGGATTAGTAAAGGTGTCGTGGCTAAACAGCGCGGCCACACGGACGTTCTCTATGATCTCTTCAAGCGACa > 1:494709/1‑138 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑TGTTTTTGTACTTCTGTCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa < 1:79770/138‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTTTAATTCTTGCGCGGGCGGGTGCGGATGAGTAAAGGTGTAGTGGCATAAAACCGCGGCAACACCGCCGTAATCGATTATATATTCAAGACGCATTTAAAga > 6:21442/1‑139 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa < 8:128644/138‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa < 3:567831/138‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTATTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTTGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa < 1:448233/138‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTTTACTTCTGGAGCGGTCGGGTGAGGATGAGTAAATGTGTCGTGGCATAACAGCGCGGCAACCCGGACGGACTCGATGAGCTCGGCAAGCGACATTTCAAGc > 6:527273/1‑140 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTACATATGGCGCGGTCGGGTGCGGATGAGTAAATGTGTAGTGGCATAAAAGCGCGGCAACCACGACGTAATCGATGATAAATTCAAGCGCCAATTAAAga > 6:378469/1‑139 (MQ=255)
tcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTTTACTTCTGGCGCGGTCGGTTGAGGAATATTAAATGTGTCGTGGCATAACAGCGCCGCAACACCGAACTACTCGATTATATCTTCAAGAGACAATTaaaa > 4:386883/1‑137 (MQ=255)
tcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTTTACTTATGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaaa > 2:617788/1‑137 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTTGCGCGGTAGGTTTCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATTATATCTTCAAGCGAGATTTctatc > 2:623562/1‑134 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTTTACTTCTGGCGCGGTCGGGTGCGGATGACTAAAGGTGGCGGGGGATAACCACGCGGCACCACGGCCGGACTCGAAGCTCTCGTCACGACACCTTTCAAGc > 8:456710/1‑138 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTTTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATATCTTCAAGCGCCAtttaacgc > 2:303989/1‑133 (MQ=255)
ccTTACAATTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTTTTATAAATGCGCGGGCGGTTTGTGAGGAGTTAAGGTGTAGTGGGATAAAACCCCGGCAACACCGCCCGACTCGCTGATAGCGTGAAGCGACATTTAAAgg > 8:303322/1‑137 (MQ=255)
gTTTTTAGTGTAGAGTC‑GGGTTTTGTTATTCTGGCGCGGTCGGGTGGGGATGAGTAAAGGTGTGGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCGGAtctt > 2:334261/1‑138 (MQ=255)
tttAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTAGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCATGCTCTTCCTGAtcttcgt < 2:369748/138‑1 (MQ=255)
ttAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtc < 4:206257/138‑1 (MQ=255)
gtgtAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATcttcgtcttcgt < 5:462271/140‑1 (MQ=255)
gtgtAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATcttcgtcttcgt < 5:346368/140‑1 (MQ=255)
gttcagTC‑GGTTTTTGTACTTCTGGCGCGGGCTGGTGCGGATGAGTAACGGGGTCGTGGCAGATCTGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtcttcgg < 8:436259/134‑2 (MQ=255)
gtAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATcttcgtcttcgt < 7:378842/138‑1 (MQ=255)
gtAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATcttcgtcttcgt < 8:167983/138‑1 (MQ=255)
c‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCa < 5:544158/140‑1 (MQ=255)
ttttttTCTTGTGGGGCGGGCGGTTGGGGTTGAGTAAAGGTGTCGTGGGATAAAAGCGCGGCCACCCCGACGGACACGATGATCTATTCAATCGACATTTAAATCTCTTACTGATCTTAGTATTATTCGTAACCCAAc > 2:205326/1‑138 (MQ=255)
ttGTACTTCTGGCTCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 5:23930/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGTTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 2:476562/138‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTGAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 5:251789/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 5:21442/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 5:279783/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 2:5730/138‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 4:461524/138‑1 (MQ=255)
ttGTACTGCTGGCGCGGTCGGGTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 3:48032/138‑1 (MQ=255)
ttGTACGTCTCGCGCGGTCGGTTGCGTATTAGTACAGGTGTAGTGGCATAACAGCGCGGCAACACGGACGTACTCGACGATCTCTTCAAGCGACATTTCAAGCGCTTCCTGATCTTCGTCTTCGTCTTAACCCAACTg < 8:136300/138‑1 (MQ=255)
gTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCATCGTCGTAACCCAACTGcgcg < 6:87938/140‑1 (MQ=255)
gTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 2:478816/138‑1 (MQ=255)
gTACTGCTGGCGCGGTCGGTTCCGGATGAGTAAATGTGGCGTGGAATCACAGCGCTGAAACACGGACGTACTCGATGATCTCTTCCAGCGAAATTTCACGCTCTTCCTGCTCATCGTCTTCGTCGTATCCCAACTgcg < 7:451768/138‑1 (MQ=255)
tACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGa > 6:351926/1‑140 (MQ=255)
tGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATATTCGTCTTCGTCGTAACCCAAAGGCGCGATGtt > 7:238972/1‑138 (MQ=255)
gcgcGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTAc > 3:164010/1‑138 (MQ=255)
cggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCATCACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCGTGATCTTCGTCTTCGTCGTAACCCAACAGCGAGATGTTACGCAGAtc > 1:320982/1‑138 (MQ=255)
cggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCTTCGTAACCCAACTGCGCGATGTTACGCAGAtc > 2:101532/1‑138 (MQ=255)
cggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAtc > 2:209547/1‑138 (MQ=255)
cggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAtc > 3:73598/1‑138 (MQ=255)
|
CGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGATC > NZ_CP022686/1674111‑1674382
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
