Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A29 F2 I0 R1
|
207 |
10827.9 |
9263290 |
98.4% |
9115077 |
135.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,674,248 |
T→G |
10.2% |
Q180H (CAA→CAC) |
ygfB ← |
UPF0149 family protein YgfB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,674,248 | 0 | T | G | 10.2%
| 342.6
/ 3.6
| 195 | Q180H (CAA→CAC) | ygfB | UPF0149 family protein YgfB |
| Reads supporting (aligned to +/- strand): ref base T (57/111); new base G (19/6); total (76/119) |
| Fisher's exact test for biased strand distribution p-value = 1.05e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 203 total aligned reads displayed.
CGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGATC > NZ_CP022686/1674111‑1674382
|
cgcTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTg < 1:1010950/140‑1 (MQ=255)
cgcTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTg < 3:162740/140‑1 (MQ=255)
cgcTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTg < 1:858104/140‑1 (MQ=255)
cTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTAATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGGTTTGTACTTATGGGGCTGTCGGGTg > 6:258011/1‑138 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGc < 5:1062592/138‑1 (MQ=255)
ggCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCCTAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 6:276196/137‑1 (MQ=255)
gCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCg < 8:339390/138‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 7:1033010/138‑1 (MQ=255)
ccGGGGTGCATTTGCTCTACAAGGGCCTGACGTCGACGCTGAACCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCTGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 6:780637/138‑1 (MQ=255)
gtgtGCTTTTTCTCTACAAGGGCCTGACGTCGACGCTGAAACTCTTGCAGGGATATCTCACTCATTAAACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAg < 3:318570/137‑1 (MQ=255)
ttGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTTCTTGGGGCGCGGGCGGTTGCGGTTGAGTa > 3:344498/1‑140 (MQ=255)
cATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTTATTCTGGCGCGGTCGGTTGCGGATGAGTaaat > 1:409463/1‑139 (MQ=255)
tttGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTAGTTATGGGGCGGTGGGTTTGGGAGGAGTatat > 6:1028054/1‑135 (MQ=255)
tgagctACCAGGGCCTGTCTGCGAGGCTGATAATCTATTGCGGCTATATCACTCTTAACACTCTCCTTTAATATTTTGTTTTTAGTGTTGAGTCGGGGTTTGTACTTCTGGCGCGGTCGGGTGCGGATTAGATAAGgt < 8:400762/134‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACTCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 5:251499/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 6:705799/138‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 6:544010/138‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 6:97923/138‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 4:744376/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTACTTATTGCGCGGTCGGGTGCGGTTGATTAAATGTGTCg > 4:14420/1‑140 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 1:43416/140‑1 (MQ=255)
aCCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGGGCGGGCGGTTGCGGATGAGTAAACGGGTAGTGGc > 2:1148323/1‑140 (MQ=255)
cAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTTCTTCTGGCGCGGTGGGGTGGGGTGGAGTAAATGTGtggtggg > 7:439123/1‑137 (MQ=255)
ggCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTAGGTTTTTGTAGATATGGAGAGGGCGGTTGGGGCTGAGTAAAGGTGTGGTGGCGTaaa > 1:782296/1‑139 (MQ=255)
ccTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAg < 2:805425/140‑1 (MQ=255)
tGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACCTTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTCGGGCGCGGTCGGTTGCGGGTGAGTAAAGGTGTCGTGGCCTTACAgcg > 2:963125/1‑140 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTTGTTGTGGCGCGGTCGGGTGCGGGTGTGGTAAGGTGTGGTGGGATAAAATcgcg > 1:913330/1‑140 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTTATTGTGGCGCGGGGGGGTGGGGATGTGTAAAGGTGTGGTGGGATAACAGcgcg > 3:555313/1‑140 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCgg < 3:31184/140‑1 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTGGAGGATGAGTAAAGGGGTCGTGGCATAACAGCGCgg > 4:1090303/1‑140 (MQ=255)
ggCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACTTATGGCGCGGTCGGTTGAGGATGAGTAAAGGTGTCGTGGGATAAAAccgcc > 6:766335/1‑137 (MQ=255)
ggCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTTATTATGGCGCGGTCGGTTGAGGATGAGTTAAGTTGTAGTGGGATAACAgcgcc > 5:951125/1‑137 (MQ=255)
cGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCaa < 3:424162/140‑1 (MQ=255)
aatcTGAAACTCTTGCCGGGATATAGCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTCGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCaa < 7:30103/135‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTAGTGGGATAACAGCGCGGcca > 6:642092/1‑136 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAATTCAGGCGCGGTGGGTTGGGGATGTGTAAAGGTGTGCTGGCATAACAACGCGGGAacc > 1:1187520/1‑139 (MQ=255)
aCGCTGAAACTCTTGACGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCTGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCaa < 7:997629/138‑1 (MQ=255)
cTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAacac < 7:413108/138‑1 (MQ=255)
gAAACTCTTGCAGGGATATATCACTCATAACACTCTCCTTTCATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGTTGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGAc < 1:1070836/140‑1 (MQ=255)
aaCTCTTTCCGGTATATATCACTCCTCACACTCGCCTTACATTTTTTGTTGTTAGTGTAGAGTCTGATTTTGAACTTCTGGCGCGGTCGGTTGCGGATGAGTAATGGGGTCGTGGCATAACAGCGCGGCAACACGGACGt < 4:850316/140‑1 (MQ=255)
aaCTCTTGCCGTGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGGCGTGGCATAACAGCGCGGCAACACGGACGt < 2:503386/140‑1 (MQ=255)
ctctTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTGGTGGCATAACAGCGCGGCAACACGGCCGt > 5:580317/1‑138 (MQ=255)
ccGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatg < 2:117386/140‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatgat < 4:327017/140‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatgat < 1:544418/140‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGGCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatgat < 4:416523/140‑1 (MQ=255)
cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAg < 7:352367/138‑1 (MQ=255)
tCATAACAGTCTCCTTTCATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGGTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGa < 2:777317/140‑1 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGc < 5:676274/138‑1 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGAGGCAACACGGACGTACTCGATGATCTCTTCAAGc < 6:924458/138‑1 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTTATTCTGGGCCGGGAGGTTGCCGATGTATAAAAGTGTCGGGGGATAAAAGCGCGGCAACACCGACGAACTCGATGATATCTTCAAGCgc > 3:235535/1‑139 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGc < 8:1058104/138‑1 (MQ=255)
cATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACATATGGCGAGGTCGGGTGCGGATGAGGAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTAATAGATGATCTATTAAAGCg > 8:211643/1‑138 (MQ=255)
aTAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAAAAGCGCGGCAACACGGCCGGACTCGATGATGTCTTCCAGCgc > 6:336655/1‑137 (MQ=255)
aTAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTATGGCGCGGTCGGTTGCGGATGAGTAAATGTGGGGTGGGCTAACAGCGCGGCAACACGGGCGTACTCGATGATCGCGTCAAGCGACa > 4:933244/1‑140 (MQ=255)
aaCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTTATTCTGGCGCGGGAGGTTTCGGCTGAGTTAAGGTGTCGGGGCATAACCGCGCGGCAACAAGGGCGTACTAGATGATCGCGTAAAGCGACAtt > 3:866786/1‑140 (MQ=255)
cacTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACAtt > 7:169588/1‑138 (MQ=255)
acTCTCCTTACATTTATTGTTTTTATTGTAGACGCGGTTTTTGCACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGAATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACAttt < 6:1117666/138‑1 (MQ=255)
tctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGGGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCa < 5:699682/138‑1 (MQ=255)
tctcCTTACATTTTTTGTTATTAGTGTAGAGTCGGTTTTTGTAAGTATGTTGACGGGGGTTTGGGTTGAGTAAACGTGTGGTGGCCTAACAGAGCCGGAACACCCACCTTCGAGATTATATCTTCAAGCAACAATTaaaa > 2:51092/1‑139 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTTAGTATGGCGCGGTCGGTTGCGGTTGAGTAAAGGTGTACTGGCATAACAGCCCGGCAACCCGGACGTACTCGATGAAGTGTTGAACCGACAATTaaatc > 4:369376/1‑138 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 2:841021/140‑1 (MQ=255)
ctcCTTACAGTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAAATCGGGCTCGGTCGGTTGCTGATGTGTAAAAGTGTCGAGGCCTAACACCGCGCCCACCCGCACGCACACCACTATCACATCAATCGACAattacatc > 2:863576/1‑135 (MQ=255)
ctcCTAACATTTTTTGTTTTTAGTGTAGAGTCGGTGTTTGTACATCTGGCGCGGTCGGTTTGGGATGAGTAAAGGTGTCGTGGGATAACACCCCGGGCACCCGGACGGTATCGATGAGCTCTTCAAGCGACCTTTCAAGc > 4:685944/1‑140 (MQ=255)
tacTTCCATTTTTTGTTTTTAGTGTAGAGTCTGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACATAGCTGCAACACGGACGTACTCGATGATCTATTCAAGCGACATTTctat < 5:852882/136‑4 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACATATGGGGCGGGCGGTTGCGGATGAGTAAAAGTTTGGGGGGATAACAGCGCGGCAACACGGACGGACTCGATGATCAATTAAACCGCCAATTAAAGc > 5:499825/1‑138 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTCTGGCGCGGGCGGTTTCGGATGAGTAAAGGTGTAGTGGCATAACAGCGCGGCAACACGGACGGACTCGATGATATCTTCAAGCGCCATTTAAAGc > 8:526699/1‑138 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTAATTCTGGCGCGGTGGGTTGCGGATGAGTTAAGGTGTCGTGGCATAACAGCGCGGCACCACGGACGTACTCGATGCTATCGTCAAGCGACATTTCAAGc > 7:533204/1‑138 (MQ=255)
aCATTTTTTGTTTTTTGTGTAGAGTCGGTTTTTGTACTTCTGGCGGGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCtt < 6:516072/138‑1 (MQ=255)
aCATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCtt < 8:169588/138‑1 (MQ=255)
aTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTTCTTATGGCGCGGTCGGGTGGGGTTGAGGTAAGTTGTCGTGGGAGAACAGCGCGGCCACACGGGCGGACTCGATGTTCTCTATAAGAGAAATTTAAAGCTATTcc > 6:1001814/1‑138 (MQ=255)
ttttGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTGTAGGCTGAAGAAAGGTGTCGTGGGATTACACCGCCGCCACGCCGCCGGACTCCAGGATCACTTCAAACATCCTTTAAAGCTCTTGCTGa > 6:955593/1‑138 (MQ=255)
ttGTTTTTAGTGTAGAGTCGGGTTTTGTACATATGGGGCGGTCGGTTGCGGATGAGGTAAGGTGTCGTGGCATAACCGCGCGGCCACACGGACGTACACGATGATCTCATACAGCGACATTTAAAGCTATTCCGGaaa > 8:637974/1‑136 (MQ=255)
ttGTTTTTAGTGTAGAGTCGGGTTTTGTAATTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCCACACGGACGTACACGATGATCTAGTCAAGCGACATTTAAAGCTCTTCCTGAtctt > 2:1123716/1‑140 (MQ=255)
tttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtct < 1:274724/140‑1 (MQ=255)
tttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtct < 4:625240/140‑1 (MQ=255)
ttAGTTGAGAGTCGGTGTTTGTACTTCTGGCGCTGTCGGTTGCGGATGAGTAAAGGTGGCGTGTCATAACAGCGCGGCAACACGGACTTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtc < 7:119057/138‑1 (MQ=255)
gtAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTtcgtcg < 2:555993/140‑1 (MQ=255)
tCGGTTTTTTTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGCCGTACTCGATGATCTCTTCAAGCGACAATTCAAGCTCATCCTGATCTTACTCTTCGTCGTAAccc > 4:543115/1‑140 (MQ=255)
ggTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTAGTCGTAACCCaa < 1:766609/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 4:737638/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 6:889803/138‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGGCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 7:516792/138‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGGCTCGTGGCATATCAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCGCTTCCTGAGCTTCGTCTTCGTCGTAACCCTACTgcg < 3:802691/140‑1 (MQ=255)
ttGTACTTCGGGCGCGGTCTGATGAGGAAGTGTAAAGGATTCGTGGCATAACAGCGCGGAAACACGGAGGTACTCGATGATCGCTTCACGCGACATTTCAAGCTCTTCCTGTTCTTCTTCTTCGTCGTAACCCAACTg < 5:634243/138‑1 (MQ=255)
ttGTACTGCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 2:410515/140‑1 (MQ=255)
gTACTTCTGGCGCGGTCGGTTGCGTATGATTAAAGTTGTCGTGGCATAACAGCTCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGctcg < 2:58561/140‑1 (MQ=255)
gTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 5:336655/138‑1 (MQ=255)
gTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGcgcg < 4:576752/140‑1 (MQ=255)
gTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGcgcg < 1:616644/140‑1 (MQ=255)
gTACATCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGAGGCATAACAGCGCTGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 7:709868/138‑1 (MQ=255)
tCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGTCTTACCAGCGCGGCCACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGCTCTTCGTCTTAGTCGTAACCCAACAGCGAGATg > 8:368522/1‑138 (MQ=255)
tCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATCACAGCGCGGCAACACGGACGTACTCGATGATCACTTCAAGCGACATTTCAAGCTCTTACTGATCTTCGTCTTCGTCGTAACCCAACAGCGCGATGtt > 3:667150/1‑140 (MQ=255)
tCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGtt > 2:1064566/1‑140 (MQ=255)
tGGCGCGGTCGTGAGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGCTCTCTTCACGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTACACCCACTGCGCCCTGtt > 5:155329/1‑138 (MQ=255)
tGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCACCACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATATTCGTCTTCGTCGTACCCCAACTGCGGGATGtt > 5:823443/1‑138 (MQ=255)
ggCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACg < 1:960257/140‑1 (MQ=255)
gtcggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAtc > 4:557301/1‑140 (MQ=255)
cggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCTTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAta > 6:312908/1‑137 (MQ=255)
cggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 5:773019/120‑1 (MQ=255)
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CGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGATC > NZ_CP022686/1674111‑1674382
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
