Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A29 F11 I0 R1
|
249 |
11230.8 |
10274356 |
98.4% |
10109966 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,674,248 |
T→G |
11.6% |
Q180H (CAA→CAC) |
ygfB ← |
UPF0149 family protein YgfB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,674,248 | 0 | T | G | 11.6%
| 375.5
/ 11.7
| 222 | Q180H (CAA→CAC) | ygfB | UPF0149 family protein YgfB |
| Reads supporting (aligned to +/- strand): ref base T (48/141); new base G (23/8); total (71/151) |
| Fisher's exact test for biased strand distribution p-value = 2.72e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 228 total aligned reads displayed.
CGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAT > NZ_CP022686/1674111‑1674381
|
cgcTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTg < 2:226847/140‑1 (MQ=255)
cgcTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTg < 7:739692/140‑1 (MQ=255)
tggcGGGTTGCATGTGCTATAACAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACCCTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 2:617760/137‑1 (MQ=255)
tGCCGGGTTGCATTTGCTGTACCATGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 7:1215671/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 4:731804/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 4:529030/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 2:323875/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 2:920723/140‑1 (MQ=255)
tGCCGGGTTGAATTTGCTCTACAAGGGCCTGACGGCGACGCTGAAACTTTGGCCGGGATATATCACTCATAACACTCTCCTTACTTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTTCTTATGGCGTGGTCGGTTGCgg < 7:560280/140‑1 (MQ=255)
ttGCATTTGCTCTACCAGGTCCTGCCGGCGACGCTGAAACTCTTGCCGGGATATATCCCTCATATCACACGCCTGACATTTTTGGTTTTTAGTGTAGCGTCGGTTGTAGTCCTAAGTGCGCGGTCGGGTGCGGAAGAGtg > 7:338390/1‑139 (MQ=255)
tGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGTATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTaa < 5:696576/140‑1 (MQ=255)
tGCTCTTCGAGGGCCTGACGGCGACGGTGTTACTCTTGCCGGGTTATATCTCTCATAACACTCTCCTTTCATTTTTTGTTTTTAGTGTTGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAATGgt < 4:163291/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 1:1194395/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 2:381853/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 2:458419/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 4:41355/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTAACATTTTTTATTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 7:568582/140‑1 (MQ=255)
gtctACCAGGGCCTGACTGAGACGCTGAAACTCTTGGAGGGAAATATCACTAATAACAATCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTCTGGCGCTGTCGGTTGCGGATTAGTAAAGGTGTCg < 2:1174280/139‑1 (MQ=255)
ctctACCAGTGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 8:740275/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCTGTATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 6:659673/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 5:300074/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 8:1214836/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 5:104215/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 7:144572/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGAGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 2:1294056/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGAGATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTTGAGTCGGTTTTTGTACTTCTGGCGCTGTCGGTTGCGGATGAGTAAAGGTGTCg < 6:687086/140‑1 (MQ=255)
tctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTGTTGCGGGGTGGGGTGGGGATGAGTTAAGGggtggt > 1:60570/1‑140 (MQ=255)
aCCAGCGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTg < 8:107803/117‑1 (MQ=255)
ccAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTATGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCa > 2:69114/1‑140 (MQ=255)
aGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTCTGGCGCGGGAGGGTGGGGATGTAGAAAGGTGTCGTGGcg > 3:124579/1‑137 (MQ=255)
ggCCTGGCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTTCTTCTGGCGCTGTGGGTTGCGGTGGAGTAAATGTGTCGTTGGATAAc > 6:455593/1‑140 (MQ=255)
ccTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAg < 2:874342/140‑1 (MQ=255)
cTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTGTGGCGCGGGCGGTTGGGGATGAGTAAAGGTGTCGTGGGATAACa > 3:584007/1‑138 (MQ=255)
tGACGGCGCCGCTGAAACTCTTGCCGGTATATATCACTCATAACACTCTCCTTACATTTTTTGGTGTTAGTGTAGAGTGGGTTTTTGTAGTTAGGGGGGGGTAGGGTGCGTATTTGTAAATGTTTATTGGCATAAAAgga > 8:196853/1‑138 (MQ=255)
tGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTTCATCTGTCGCGGGAGGGTGGGGATGAGTAAAGGTGTCGTGGCATaaaaccg > 5:100066/1‑135 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTCTGGCGCGGTGGGGTGCGGATGTGTTAAGGTGTCGTGGCATAACAGcgcg > 2:1081434/1‑140 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCGCCTTACATTTTTTGTTTTTATGGTAGAGTCGGTTTTTTTACTTCTGTGGCGGTGGGTGGCGGGTGAGTAATGGGGGTGTGGCCTTACcgcggg > 8:811065/1‑138 (MQ=255)
cGGCGACGCTGAACCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCgg < 8:438468/140‑1 (MQ=255)
cGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAGGTGTTGGGCGGTGGGTTGCGGATGAGTTAAGGTGTGGTGGGCTTAAAGCGCGG‑cca > 8:49057/1‑138 (MQ=255)
cGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACGTCGGGCGGGGTCGGTTGCGGATGAGTAAAGGTGTAGTGGCAGAACAGCGCGG‑ccc > 2:1050879/1‑138 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTTCATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGGCGTGGCATAACAGCGCGG‑CAaca < 5:990490/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAaca < 1:1011646/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAaca < 7:1043781/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAaca < 8:236927/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGCGGGTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑Caa < 4:1047233/138‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACACATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCGGTCGGCGGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑Caa < 4:1273528/138‑1 (MQ=255)
cGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAacac < 1:286728/140‑1 (MQ=255)
tGAAACTCTTGCCGGGATATATCACTCAAAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGAGGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACg < 4:195410/138‑1 (MQ=255)
aaaCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGa < 4:904033/138‑1 (MQ=255)
aaCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGGTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGt < 6:737348/140‑1 (MQ=255)
ttGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACt < 3:311946/138‑1 (MQ=255)
tGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTAAATATGGAGCCGTCGGTTGAGGATGAGTAAAATTTTATTTGCATAAAAGCGCGG‑CAACAAGGACGTaataaa > 1:320669/1‑135 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCgatgat < 1:102400/140‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCgatgat < 1:722391/140‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCgatgat < 2:774231/140‑1 (MQ=255)
aCTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGc < 2:650196/140‑1 (MQ=255)
cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGATTAAATGTGTCGTGGCATAACAGCGCCG‑CAAAACGGACGTACTCGATGAACTCTTAAAGCg > 5:329266/1‑140 (MQ=255)
cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGCg < 7:497273/140‑1 (MQ=255)
cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGG‑TTTTGTAAATCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CCACACGGAAGTACTCGATGATCTATTCAAGCGa > 5:881566/1‑140 (MQ=255)
cTCATAACACTCTCCTTACATTTTTGGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGGCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGCg < 8:335342/140‑1 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGCGa < 7:277154/140‑1 (MQ=255)
cATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGCg < 3:1112481/138‑1 (MQ=255)
aTAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTAATTCTGGCGCGGTAGGTTGCGGATGAGTAAAGGTGTCGTTGCATTACAGCGCGG‑CCAACCGGACGTACTCGATGATCTCTTGAAGCGAcc > 8:458201/1‑139 (MQ=255)
aTAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGAAGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGCCGTACTCGATGATCACATCAAGCGa > 4:614752/1‑138 (MQ=255)
aTAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTACTACAGGCGCGGTAGGTTGGGGGTGATTTAATGGTTGGTGGGATTACAGCGGCG‑CAACCCCGGCGTACAAGATGAGCTCATCTAGCGCCa > 5:609277/1‑140 (MQ=255)
aaCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACTTATGGCGCGGTCGGGTGCGGATGAGTAAAGGTGTGGTGGGATAACAGCGCGG‑CAACACGGGCGGACTCGATGATCTCTTGAAGCGACAtt > 2:1210063/1‑140 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTTGAGTCGGTTTTTGTACATCTGGCGCGGTCGGGTGCGGATTATTAAAGGTGTAGTGGCATAACAACGCGG‑CCACACGGACGTACTCGATGATCTCATCAAGCGACATTTAAAGc > 6:868446/1‑140 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACTTATTGCGCGGTCGGTTGCGGATGAGTAAATGTGTCGTGGCATAAAAGCGCGG‑CAACACCGACGTACTAGATGATATCTTAAATCGAAATTTAAAGc > 7:110765/1‑140 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTAATTAATGCGCGGTAGGTTGGGGATGAGTAAAAGTGTCGTGGCATAAACTCGCCG‑CAACCCGGACGTAATAGATGATCTATTCAAGCGACAATTaaacc > 8:223806/1‑138 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 7:619505/140‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 2:195692/140‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTACTTGATGCGCGGGCGGTTGGGGATGAGTAAATGTGTCGGTGCATTACACCGCGG‑CACAACGGCCGGAAACGAAGATCGCTTAAAGCGACAATTTaaaa > 6:216522/1‑138 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTGAATTCTGGCGCCGTAGTTTTAGCATGAGGATAGTTGTCGGTGCATAACAGCGCGG‑GACAACGGAAGTGATCGCTGATCTCTGCAAGCGACAATTGaa > 4:223518/1‑138 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTCTGCTGTCGCGGTGGGTTGGGGATTAGTAAAGGTGTCGTGTGATAACCGCGCGG‑CAACACGGCCGTACTCGCTGATATAATCACTCGACAttttcagc > 6:1257830/1‑135 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTATGGCGCGGTCGGTTGAGGATGAGTAAAGGTGTAGTGGCATAACAGCGCCG‑CAACACGGACGTACTCGATGATCACATCAAGCGCCAATTaaaac > 2:561906/1‑138 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGctc < 8:158496/140‑1 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTATGGCGCCGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCCTAACAGCCCGG‑CAACACCGACGTAATCGCTGATCTCTTCAAGCGCCAtttacagc > 4:790243/1‑133 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACGTATGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACCGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc > 4:946713/1‑138 (MQ=255)
aCATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCtt < 4:371923/138‑1 (MQ=255)
ttttGTTTTTAGTGTAGAGTCGGTTTTTTTAATTCTGGCGCGGTCGGGTGCGGATGGGGTAAGGGGTAGGGGCATAACAGAGAGGACAAC‑CGGCAGTACTAGATGATCACGTCAAGCGACAATTAAATCTCTGCCAGAta > 6:1095913/1‑139 (MQ=255)
ttttGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtct < 5:1228831/140‑1 (MQ=255)
tttAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtct < 8:906200/140‑1 (MQ=255)
tttAGTGTAGAGGCGGGTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCTTGGCATAACAGCGCGG‑CAACACGGACGGACTCTATGATCTCTTCAAGCGACATTTCAAGCGCTTCCTGAtcttcgtct < 2:1239076/140‑1 (MQ=255)
ttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAATGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtctt < 7:976925/140‑1 (MQ=255)
gtgtAGAGTCGGTTGTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGGCGTGTCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATcttcgtcttcgt < 7:827276/140‑1 (MQ=255)
gtgtAGAGTCGGGTTTTGTCCTTCTGTCGCTGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGAGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATcttcgtcttcgt < 7:421583/140‑1 (MQ=255)
gtgtAGAGGCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATcttcgtcttcgt < 5:831290/140‑1 (MQ=255)
gtAGAGTCTGTTTTTGTACTTCTGGCGAGGGCGGTTGCGGATGAGTAAAGGTGTCGGGGCATAACAGCGCGG‑CAACACGGACGTACTAGATGATCTCTTCAAGCTACTTTTCAAGCTCTTCCTGATCTTCGTCTtcgtcg < 7:66886/140‑1 (MQ=255)
gtAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAAGACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTtcgtcg < 1:541153/140‑1 (MQ=255)
gggttttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCaa < 8:798835/137‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 5:251735/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGGTGCGGATGAGTAAAGGGGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 4:1131253/138‑1 (MQ=255)
ttGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 3:759577/138‑1 (MQ=255)
gTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 3:216853/138‑1 (MQ=255)
gTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGcgcg < 1:1081434/140‑1 (MQ=255)
gTACTTCTGGCGCGGTCGGTTGCGGAAGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTCCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 3:1229377/138‑1 (MQ=255)
aCTTCTGGCGCGGTCGGTGGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGcgcg < 3:160869/138‑1 (MQ=255)
tGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGtt > 3:892422/1‑138 (MQ=255)
gcgcGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGc > 7:1194096/1‑140 (MQ=255)
cgcgGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCa < 1:249489/140‑1 (MQ=255)
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CGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGG‑CAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAT > NZ_CP022686/1674111‑1674381
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
