Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A30 F2 I0 R1
|
181 |
7914.3 |
8336376 |
98.4% |
8202993 |
136.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,674,248 |
T→G |
13.5% |
Q180H (CAA→CAC) |
ygfB ← |
UPF0149 family protein YgfB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,674,248 | 0 | T | G | 13.5%
| 277.4
/ 8.7
| 166 | Q180H (CAA→CAC) | ygfB | UPF0149 family protein YgfB |
| Reads supporting (aligned to +/- strand): ref base T (39/99); new base G (19/8); total (59/107) |
| Fisher's exact test for biased strand distribution p-value = 9.49e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 173 total aligned reads displayed.
CGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGATC > NZ_CP022686/1674111‑1674382
|
tGCCGGGTTGCATTTGCTCTACCATGGCCTGACGGCGACGCTGAAACTCTTGCCGTGATATATCACTCATAACACTCTCCTTACATATTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCgg < 6:673481/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGATGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCgg < 2:296285/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCgg < 3:715023/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCgg < 1:557096/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCgg < 6:838163/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCgg < 8:646155/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCAACCAGGGCCTGACGTCGACGATGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCgg < 7:27071/140‑1 (MQ=255)
ggCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCgg < 5:772451/139‑1 (MQ=255)
ggCCGGGGTGCAGATTCTCTACCAGGGCCTGACGGCGACTCTGAAACTCTTGCCGGGATATTTCACTCATAACACTCTCCTTACAATTATTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCgg < 7:749286/139‑1 (MQ=255)
ccGGGTTGCATTTGCTCTTCCAGGGCCTGACGGCGACGCTGTAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGAt < 5:513400/140‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGG‑TTTTGTTCTTGTGGCGCGGTCGGTTGCGGAt > 1:183956/1‑140 (MQ=255)
cGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCCGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATg < 2:916293/140‑1 (MQ=255)
ttGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGATGCGGG‑TGTTGTACTTATGTCTCGGTCGGTTGCGGATGattt > 3:600774/1‑137 (MQ=255)
cATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAg < 1:460015/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 1:395794/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 4:700376/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 1:682494/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTCTAGAGGCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 6:934637/140‑1 (MQ=255)
gCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACCCTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTATGTCGCGGTCGTTTGCGGATGAGTTAATgtttg > 6:231285/1‑137 (MQ=255)
ctctACGAGGGCCTGACGGCGACGCTGAAACGATTGGCGGGATATATCACTAATAACACTCTCCTTACTTTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 8:149013/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATACCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 7:641979/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 1:855841/140‑1 (MQ=255)
ccAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTTTTCTTGTGGCGCGGGCGGTTGGGGGTGAGTAAAGGGGTCGTggaa > 3:457762/1‑138 (MQ=255)
ccAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTTGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGcc > 8:583087/1‑139 (MQ=255)
gCCTGACGGCGCCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCGTACATTTTTTGTTTTTAGTGTAGAGTCGGTGTTTTGT‑CGTGTGGGCCGGGCGGGGGAGGATGAGGAAACGTGTCGAGGccgaacc > 5:342753/1‑134 (MQ=255)
gCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACGTGGGGCGCGGTCGGTTGCGGAGGAGTAAATGGGTCGTgggaatacc > 4:612655/1‑133 (MQ=255)
cccgACGGCGACGCTGAAACTCTTTCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAg < 4:375955/137‑1 (MQ=255)
ccTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAg < 6:563497/140‑1 (MQ=255)
tGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTATGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCGATACAgcg > 4:319537/1‑140 (MQ=255)
tGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTAATTATGGCGCGGTCGGGTGCGGATGGGTAAAGGTGTGGTGGCATAACAgcg > 8:686634/1‑140 (MQ=255)
tGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGG‑TTTTTTTAATCTGGGGCGGGCGGTTGGGGATGTGGTAAGGTGTGGTGGCGTAACAgcg > 7:700098/1‑140 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTTCATCTGGCGGCGTCCGGTGGGGTTGAGGAAATGTGTGGGGGCATTACAGagcg > 3:698006/1‑140 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGG‑TTTTTTAATTCTGGCGCGGTGGGGTGGGGGTGAGTAAATTTGTAGTGGCATAACAGcgcg > 6:276389/1‑140 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGG‑TTTTGTACTTCTGGGGCGGTGGGGGGGGGGTGATGTAAGGTGGAGGGGGGTAACAGcgcg > 1:705100/1‑140 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGG‑TTTTGTAAGTCTGGGGCGGTGGGGTTCGGTTGAGGTAAGGTGTGGGGTCTTAACcgcgcg > 4:399655/1‑140 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCgg < 7:576699/140‑1 (MQ=255)
gACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTTTACTTGTTGCGCGGGCGGGTGGGGATGAGTAAAGGTGTGGGGGGCTAACAGCGCGGCAac > 8:472211/1‑140 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGGTGCGGATGAGTAAAGGTGTCGGGGCATAACAGCGCGGCAaca < 6:442596/140‑1 (MQ=255)
aaaCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACg < 4:830694/140‑1 (MQ=255)
aCTCTTGCCGCGATATCTCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGGGTAGCGTCGGT‑TCTTGTACTTCTGGCGCGGTCGGGTGCGGATGAGGAAAGGTGGCGTGGCAGAACAGCGCGGCAACACGGACGTa < 6:535929/140‑1 (MQ=255)
tctTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACt < 1:973985/140‑1 (MQ=255)
ttGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGG‑TTTTGTTATTCTTGCGCGGTCGGTTGGGGATTCGTAAATGTGTCGTGGCATAACAGCGCGGCCACACCGACGTAcgcg > 5:17199/1‑140 (MQ=255)
ttGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGG‑TTTTGTACTTATGTGGCCGTCGGATGCGGATGAGGAAGGGTGTGGGGGCATTACACCGCGGGCACCCGGCCGGACTCg > 4:1059614/1‑140 (MQ=255)
ccGTGATATATCACTCATATCACTCTCCTTTCATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTATAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatg < 2:303067/140‑1 (MQ=255)
atatCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGG‑TTTTGTGATTCAGGGGCGGGGGGGGGGGGGTGAGGAAAGTTGGTGTGGCCGTACCGCGCGGCCACCCGGACGGACGCGATGAtctcat > 5:69972/1‑138 (MQ=255)
cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGATTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCg < 5:520647/140‑1 (MQ=255)
cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCg < 4:207446/140‑1 (MQ=255)
cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCg < 7:811570/140‑1 (MQ=255)
cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTGGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCg < 4:931879/140‑1 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTTTACTTATTGCGCGGACGGTTGCGGTTGAGAAAAGGTTTCGTGGCAAAAAACCGGGGCAACACGGACGTAAACGATTATCTCTTAAAgacc > 2:506741/1‑137 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGG‑TTTTGTTCTTCTGGCGCGGTCGGGTGCGGATGAGTAAATGTGTCGGGGCATAACAGCGCGGCAACACGGGCGTACTCGATGATATCTTAAAGCgc > 8:193229/1‑139 (MQ=255)
aTAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGG‑TTTTGTACTTAAGGCGCGGTCGGTTGCGGATGACTAAAGGTTTAGTGGCCTAACAGCGCGGCAACCCGGACCTACGCGAGGATCTCTTCAAGCGCCa > 6:774331/1‑140 (MQ=255)
aTAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTAGGG‑TTTTGTACATGAGGCGCGGGAGGTTTCTGATGTCTAAAAGTGTCGTGGCAGAAAAGCGCGGCAAAAACGAAGTACTCTATGATATCATCAAGcaaaa > 6:948275/1‑136 (MQ=255)
acacTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTTAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACAttt < 2:977536/140‑1 (MQ=255)
acTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCa < 5:210552/140‑1 (MQ=255)
acTCTCCTTACATTTTTTGTTATTAGTGTAGAGTCGGT‑TTTTGTACTTCTTGCGCGGTCGGGTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCa < 7:459614/140‑1 (MQ=255)
tctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAg < 5:942247/140‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTTTTCTTCTGGCGCGGTCGGTTGCGGATGAGTTAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTGCTCGATGATCTCTTCAAGCGACATTTaaacc > 1:1005472/1‑138 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTTTACTTCTGGCGCGGTCGGGTGCGGATGTGTATAGGTGTGGTGGGATAACAGAGCGGCAACACGGACGTACTCGAAGATGACTTCCAGCGACAtatacagc > 8:394480/1‑133 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTTTACTTATTGCGCGGGCGGTTGGGGATGAGTAAATGTGTAGTGGCATAACAACCCGGCAACACGGACGTAATCGATGATATCTTAAAGCGACAATTCAAGc > 4:517712/1‑140 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTTTAATTATGGCGCGGTCGGTTTCGGATGAGGAAAGGTTTAGTGTCATAAAAGCGCGGCAAAACGGACGTACTCGATTATATCTTCAAGCGAAATTTAAAga > 4:16756/1‑139 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 2:1078564/140‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTAAGGCGCGGGCGGTTGCGGAATAGTAAAGGTGTGGTGGCATAACACCGCGGCCACACCGACGTACACGAAGATCACCTCAAGCGACCATTCAAGc > 8:652899/1‑140 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTAATTAGGTGGCGGTCGGTTGCGGATTAGTAAAGGTGTAGTGGCATAACCACCCGGCAACACGGACGTACTCGATGATAACTGAAAGCCACAtttacagc > 8:740644/1‑135 (MQ=255)
tcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCg > 8:281156/1‑79 (MQ=255)
cTTACATTTTTTGTTTTTAGAGTAGAGTCGGG‑TTTTGTACTTAATGCGCGGTGGGTTGAGGATAATTTAACTTTTAGCTGAATAAAAACGCCGCAACACCGACCAACTCGTTTATATATTAAAGCGACAATTaaaagtct > 4:844590/1‑135 (MQ=255)
ttACATTTTTTGTTTTTAGTGTAGAGTCGGG‑TTTTTTACGTATGGGGGGGGCGGGTGGGGTTGAGTAAAAGTGTGGTGGGATAACAACGCGGGCACCCGGCCGTACTCGATGTACTCTTAAACCGACAATTaaaacacat > 6:210552/1‑134 (MQ=255)
aCATTTTTTGTTTTTAGTGTAGAGTCGGG‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGGCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTcc < 8:908696/140‑1 (MQ=255)
ttGTTTTTAGTGTAGAGTCGGT‑TTTTTTAATGCTGGCTCGGTCGGTTGGGGATGCTTAAAGTTGTGGTTGCATAACATCTCGGCCAAAAGGGAGGACTCCATGATTACTAGAAGCGACAATTAAAGCTGTTCCGGAtctt > 6:723139/1‑140 (MQ=255)
ttGTTTTTAGTGTAGAGTCGGT‑TTTTGTTGTTATGGCGGGGTGGGTTGGGGGTGAGTTAAGGTGTGGGGGGATAACAGGGCGGCCACAAGGACGTACTCGCTGATAACTTCAAGCGACATTTCAATCTGTGCCTgctatt > 8:141363/1‑135 (MQ=255)
ttGTTTTTAGTGTAGAGTCGGG‑TTTTGTACTTATGGCGCGGTCGGGTGCGGATTAGTTAATGTGTCGTGTCATAACAGCGCGGCAACACGGACGTACGCGATGATCTCTTCAAGCGACATTTAAAGCTATTACTGAtatt > 4:390995/1‑140 (MQ=255)
tttAGTGTAGAGTCGGG‑TTTTGTAATTCTGGCGCGGGCGGGTGCGGATGAGTAAAGGTGTTCTTGCATAACAGCGCGGCAACAAGGGCGGAATCGATGATCTCTGCAAGCCTCATTTGAAGCGATTACTGAtcttactct > 2:220096/1‑135 (MQ=255)
gtgtAGAGTCTGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATcttcgtcttcgt < 3:795887/140‑1 (MQ=255)
gtgtAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATcttcgtcttcgt < 4:555306/140‑1 (MQ=255)
gtAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTtcgtcg < 3:597312/140‑1 (MQ=255)
gagTCGGT‑TTTTGTACTTCTGGCGCGGTCGGGTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTaa < 2:179945/140‑1 (MQ=255)
tCGGG‑TTTTGTACTTATGGCGCGGTCGGGTGGGGATGAGGAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTAGATGATCTCTTCAAGCGCCATTTCAAGCTCGTGCTGATCTTCGTCTTCGGCGTAAccc > 4:995116/1‑140 (MQ=255)
ggttttGTAATTATGGCGCGGTCGGTTGCGGATGAATAAAAGTGTCGTGGGATAACCGCGCGGCAAAAAGGACGTACAAGATGATAAATTCCAGCGACAATTACAGCTCTTGCGGCTCTTCGTCTTCGTCGGTACCCCAc > 2:81365/3‑140 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAATGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 2:565921/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 1:1060826/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 2:7199/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 2:436190/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 8:800342/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 5:742546/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGAGCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 7:194999/140‑1 (MQ=255)
ttGTACTGCTGGCGCGGTCGGGTGCGGATTAGTAAAGGTGTCTTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCGCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 5:864461/140‑1 (MQ=255)
tGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt > 8:805251/1‑40 (MQ=255)
gTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGcgcg < 3:979302/140‑1 (MQ=255)
gTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGcgcg < 4:736659/140‑1 (MQ=255)
cTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGGCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATg < 7:911471/140‑1 (MQ=255)
tCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAg > 7:865708/1‑95 (MQ=255)
tCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAg < 8:865708/95‑1 (MQ=255)
gtcgcgGGCGGTTGCGGATGAGTAACGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCACGCTACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACg < 7:801054/138‑1 (MQ=255)
gcgcGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGc > 7:359278/1‑140 (MQ=255)
gcgcGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGc > 5:619465/1‑140 (MQ=255)
gcgcGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGc > 6:375445/1‑140 (MQ=255)
cgcgGTCGGTTGCGGATGAGTTTATGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAACCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCa < 7:831823/140‑1 (MQ=255)
gtcggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAtc > 3:117492/1‑140 (MQ=255)
gtcggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAtc > 3:779909/1‑140 (MQ=255)
gtcggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAtc > 1:485909/1‑140 (MQ=255)
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CGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGT‑TTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGATC > NZ_CP022686/1674111‑1674382
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
