Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A26 F36 I0 R1
|
149 |
10545.8 |
7272710 |
98.3% |
7149073 |
134.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,674,248 |
T→G |
8.7% |
Q180H (CAA→CAC) |
ygfB ← |
UPF0149 family protein YgfB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,674,248 | 0 | T | G | 8.7%
| 260.2
/ 8.4
| 153 | Q180H (CAA→CAC) | ygfB | UPF0149 family protein YgfB |
| Reads supporting (aligned to +/- strand): ref base T (38/97); new base G (13/3); total (53/100) |
| Fisher's exact test for biased strand distribution p-value = 5.46e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 157 total aligned reads displayed.
CGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGATC > NZ_CP022686/1674111‑1674382
|
cgcTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGcggtcggt < 3:35460/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 1:811085/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 7:204890/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 1:22051/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 5:34152/140‑1 (MQ=255)
ggCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 7:478286/137‑1 (MQ=255)
ggCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 2:610021/137‑1 (MQ=255)
ggCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 3:409069/137‑1 (MQ=255)
gCCGGGTTTCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTATCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGa < 6:162949/140‑1 (MQ=255)
cGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATg < 6:447967/140‑1 (MQ=255)
tttGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGGCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTTTTATTCTTGCGCGGGGGGTTGCGGATGAGTAAATgt > 5:364091/1‑140 (MQ=255)
ttctctACCAGGGCCGGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 2:496558/136‑1 (MQ=255)
tGCTCTTCCAGGGACTGACGTCGACGCTGAAACTCTTGAGGGGATATATCACTCATAACACTCTCCTTACCTTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 8:493422/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCTACTCTGAAACTCTTGCCTGGATATATCACTCATTACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGC‑GGTTTTTGTACTTCTGGCGCGGTCTGTTGCGGATGAGTTAAGgt < 4:419965/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGATACTCTTTCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 5:633052/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 5:636968/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 3:106508/138‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGTCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 4:363064/138‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGTATATATCACTCATAACAATCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGTTCGGTGGCGGATGAGTAAAGgtgt < 3:14939/138‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 3:126090/138‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 6:765937/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTAGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 7:147254/138‑1 (MQ=255)
tctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTAGGTATGGGGGGGGCGGTTGGGGATGAGGAAAGgtgtggg > 6:560904/1‑137 (MQ=255)
aGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTTTTATTATGGCGGGGTTGGGTGGGGTTTAGTTAATGTGTAGTgggg > 1:624893/1‑136 (MQ=255)
gggCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATaa < 5:680817/140‑1 (MQ=255)
ccTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAAc < 1:356230/138‑1 (MQ=255)
ccTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAAc < 7:603564/138‑1 (MQ=255)
cTGACGGCGACGCTGCAACTCTAGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTGATTGTGGTT‑TGGCGGGGGGGGGTGGCGCTGTGTAAAGTTGTCGTGGCCTAAcc > 2:249394/1‑137 (MQ=255)
ggACGGCGACGCTGAAACTCATGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAg < 4:451607/137‑1 (MQ=255)
taCGGCGACGCTGAATCTCTTGCCGGGATATTTGTCTCATATCACTCTCCTTAGATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAgcgg < 5:575861/139‑2 (MQ=255)
gACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGC‑GGGTATTGTACTTCTGGCGCGGTCGGGTGCGGATGAGTAAAGGTGTCGTGGCATAACAgc < 2:120303/138‑1 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAgcg < 8:178233/138‑1 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTACTTATGGCGCGGGGGGTTGCGGTTGAGTAAAGTTGTCGTGGGATAACAgcc > 3:632108/1‑137 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTAAAGTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTAAGTATGGGGCGGTCGGAGTGGGATGAGGTAAGGTGGGGTGGGATAAccggg > 3:189562/1‑134 (MQ=255)
ggCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTTTACTTATTGCGCGGTCGGTTGCGGATGAGGAAACGTGTCGTGGGCTAAAAGcgcg > 1:855115/1‑138 (MQ=255)
ggCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTTTACTTATGGCGCGGTCGGTTGCTGCTGAGTAAATGTGTCGTGTCATAACAGcgcg > 7:228737/1‑138 (MQ=255)
ggCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTTCTTCTGGCGCGGGCGGTTGCGGATGTCTAAAGGGGGGGGGGCATAACAGcgcg > 4:18412/1‑138 (MQ=255)
ggCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTTCTTATGGCGCGGTCGGTTGCGGTTGAGTAAACGTGTCGTGGGATAACAGcgcg > 7:777213/1‑138 (MQ=255)
ggCGACGCTGAAACTCTTGCCGGGATATAGCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGGAGAGTC‑GGTTTTTGTACGTGGGGCGCGGGCGGGTGGGGCTGGGTTAAGGTGGCGGTGCATAACcgcgcg > 7:426905/1‑138 (MQ=255)
gACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCa < 2:559907/138‑1 (MQ=255)
gACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGGCGGTTTGCGATGAGTAAAGTGGTCTTGGCATAACAACGCGGCAac > 5:224554/1‑140 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTTCTTGTGGGGCGGTCGGTTGCGGATGAGTAAAGGTGTAGTGGCATAACAGCGCGGCaa > 2:611147/1‑138 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCaa < 2:657298/138‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCaa < 4:23524/138‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCaa > 4:542999/1‑138 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTACTTATGGGGCGGTCGGTTGGGGGTGAGTTAAGGTGTGGTGGCATAACAGCGCGGcca > 4:476357/1‑136 (MQ=255)
aCGCTGAAACTCCTGCCGGGATAAATCACTCATAACCATCTCCTTCAATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGGTGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCaa < 4:212435/138‑1 (MQ=255)
cGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTTCTTCTGGCGCGGTCGGTGGGGGGTGTGTAAAGGTGTCGTGGGCTAACAGCGCGGCGac > 8:352599/1‑138 (MQ=255)
cGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTAATTGTGGCGCGGTGGGTTGGGGATGAGTAAAGGTGTGGGGGCATAACAGCGCgggcac > 1:712680/1‑134 (MQ=255)
gCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTAAATTTTGGGCGGTAGGTTTGGGATGAATAAAAGTGTCGTGGCATTAAAGCGCGTCcaca > 3:21715/1‑138 (MQ=255)
tGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGCTGAGGTAAGGTGTCGTGGCATAACACCGCGGGAACACggc > 6:650419/1‑139 (MQ=255)
aaaCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGa < 4:90078/138‑1 (MQ=255)
aaaCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGGTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACg < 6:56607/140‑1 (MQ=255)
aaaCTCTTGCCGGGATATATCACTCATAAAACTCTACTTACATTTTGTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTAGCGGATTAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGa < 4:681145/138‑1 (MQ=255)
ttGCCTGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTTGAGTC‑GGGTGTTGTACTTGTGGCGCGGACGGTTGCGGATGAGTAATGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACt < 4:466391/138‑1 (MQ=255)
ccGGGATATATCACTCAGAACACTCTCCTTACATTTTTTTTTTTTAGTGTAGAGTC‑GGTGTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAATGTGTCGTGGCATAACAGCGCGTCAACACGGACGTACTCga < 3:791399/138‑1 (MQ=255)
cGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTTTACTTATTGCGCGGTCGGTTGCGGATGAGTAAAGGGGTCGTGGCATAACATCGCGGCAACACGGACGTACTAgat > 7:376422/1‑138 (MQ=255)
gggATATTTCACTCATAACACTCTCCTTACATTTTTTGTGTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGGCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatg < 4:407375/138‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatg < 8:54129/138‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatg < 7:805688/138‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatg < 3:702686/138‑1 (MQ=255)
ggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTACATATGGGGCGGTCGGTTGCGGTTGAGGAAAGGTGTAGTGGCATAACAGCGCGGCAACCCGGCCGGACTAgatga > 3:419085/1‑138 (MQ=255)
cACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCa < 3:265826/138‑1 (MQ=255)
cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGGAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAg < 3:795978/138‑1 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGc < 4:772407/138‑1 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGc < 3:154589/138‑1 (MQ=255)
cATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCg < 2:277697/138‑1 (MQ=255)
aaCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 3:50392/84‑1 (MQ=255)
cacTCTCCTTACATTTTTTGATTTTAGTGTAGAGTC‑GGTTTTTTTACATAAGGAGACGGAGGTTGCGGATGATTATAGGTGTCGTGGCATAACAGCGCGGCACCCACGACGGACTCGATGATCTCTTGAAGCGGCAtt > 8:716615/1‑138 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGGGTCGTGGCTTAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa < 7:283171/138‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTTTAATTCTGGCGCGGTGGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGCCGTACTCGATTATATCTTCAAACGCCATTTaaatc > 6:127035/1‑138 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTAATTATGGCGCGGGGGGGTGCGGATGAGTAAATGTGTGGTGGCATAAAACCGCCGCAACACCGCCGGACTCGATGAACTCGTAAAGCGGCATATGAAgg > 5:569618/1‑139 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGATTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa < 8:65213/138‑1 (MQ=255)
ctcCTTACATTTTATGTTTTTAGTGTAGAGTC‑GGGTTTTGTAATTATTGACATCTAAGATTCGGATGAGTTAATGTGTCGTGTCATCAAAGCACCCCAACACCGACAGACGAGATGATATAATCACACGACATATAAAGc > 6:730792/1‑140 (MQ=255)
ctcCATACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 5:625323/140‑1 (MQ=255)
atcCTTACATTTTTTTGTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGCTGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa < 7:523888/137‑1 (MQ=255)
tcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAg < 3:518745/138‑1 (MQ=255)
tcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTTCTTATGGGGCGGGAGGGTGGGGATGAGTTAAGGTGTGGGGGCATTAAACCGCGGCAACCCGGGAGTTCTCGATGATCGCTTGAAGCGGCAttggaag > 8:171675/1‑133 (MQ=255)
tcCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTAATTAAGGCGCGGTGGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCCCGGGCACACGGACGTACTCGAATATCTCTTCAAGCGACATTTAAAg > 4:780112/1‑138 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGGGGATGGGTAAAGGTGTCGTGGCATAACCGCGCGGCAACACCGACGGACTCGATGATCTCTTCAATCCACATTTCAAGc > 3:537670/1‑138 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGGTTTTGTACTTATGGCGCGGGGGGGTGCGGATTTGTAAACGGGTCGTGGCATAACACCGCCGCAACACCGACGGTCGCCACGATAGCGTCAAGCCACCTTTAAAGc > 2:152043/1‑138 (MQ=255)
tACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTATTTGTGGCGCGGGCGGTGGCGGATGATTAAAGGTGTCGTGGCCTAACAGCGCGGCCACACCGACGTACGAGATGGTCTCTTCAAGCGACCTTTAAAGcgat > 4:481497/1‑135 (MQ=255)
aTTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTAATTCTGGCTCGGTCGGTTTGGGATGTGTAAAGGGGTCGTGGCATAACAGCGCGGCAAAACCGAAGTAATCGCTTATAGATTCAAGCGACATTTAAATCTCttac > 8:653424/1‑136 (MQ=255)
aTTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTAATTCTGGCGCGGGCGGGTGCGGATTAGTAAAGGTGGCGTGGCATAACAGCGCGGCAAAACGGACGTACTCGATGATCTCTTCAAGCGACATTTGAAGCTCTTcc > 8:127176/1‑138 (MQ=255)
ttttGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtc < 6:321353/140‑1 (MQ=255)
gtAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTtcgtcg < 6:462355/140‑1 (MQ=255)
gtAGAGTC‑GGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGGGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTtcgtcg < 6:366546/140‑1 (MQ=255)
ggTTTTTGTACTTCTGGCGCGTTCGTTTGCTGATGAGTAAAGGGGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGAGACATTTTAAGCTCTTCCTTATCTTCGTCTTCGTCGTAAACCaa < 6:701049/140‑1 (MQ=255)
ttgaccTTCTGGCTCTGTCGGTTGCGGATGAGTAAAGTTGTCGTGGCATAACAGCGCGGCAACAGGGACGTACTCGATGTTCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCTTCTTCGTCATAACACAACTg < 4:583244/133‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 5:650419/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 2:291933/138‑1 (MQ=255)
gTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 3:897464/138‑1 (MQ=255)
aCTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGcgcg < 3:476357/138‑1 (MQ=255)
aCTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGcgcg < 8:34177/138‑1 (MQ=255)
aCTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGcgcg < 3:542999/138‑1 (MQ=255)
cTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCCAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCACCTGCGCGATg > 6:728445/1‑140 (MQ=255)
gcgcGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGc > 6:31194/1‑140 (MQ=255)
gcgGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGc > 3:334934/1‑138 (MQ=255)
gtcggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGCCATTTCAAGATCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAta > 5:738945/1‑139 (MQ=255)
cggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCTACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCTTAACCCCACTGCGCGATGTTACGCAGAtc > 4:189935/1‑138 (MQ=255)
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CGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTC‑GGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGATC > NZ_CP022686/1674111‑1674382
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
