Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A30 F12 I0 R1
|
192 |
11691.1 |
8856334 |
98.4% |
8714632 |
135.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,674,248 |
T→G |
14.7% |
Q180H (CAA→CAC) |
ygfB ← |
UPF0149 family protein YgfB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,674,248 | 0 | T | G | 14.7%
| 307.8
/ 19.0
| 197 | Q180H (CAA→CAC) | ygfB | UPF0149 family protein YgfB |
| Reads supporting (aligned to +/- strand): ref base T (49/115); new base G (28/5); total (77/120) |
| Fisher's exact test for biased strand distribution p-value = 4.58e-09 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 211 total aligned reads displayed.
CGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGATCGTC > NZ_CP022686/1674111‑1674385
|
tGCCGGGTTGCATTTGCTCTTCCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTTCATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 4:737262/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGTCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCCGTCGGTTGc < 2:339953/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 4:674255/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 3:317863/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 3:151794/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTGTTTGTACTTCTGGCGCGGTCGGTTGc < 2:1094894/138‑1 (MQ=255)
tGCCGGGGTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 1:523073/138‑1 (MQ=255)
ggCCGTGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACTCTCTCCTTACATTTTTTGTTTTTCTTGTAGAGTCTGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 6:270439/139‑1 (MQ=255)
ggCCGGGTTGCATTTGCTGTTCGTGGGCCTGACGGATTCGCTGTAACTCTTTCGGGGTTATATCACTCTTAAGACTCTCCTTACATTTTTTGTTTTTATTGTAGAGTCGGTTTTTGTTCTTCTGGCGCGGTCGGTTGCgg < 5:886181/139‑1 (MQ=255)
ggCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 8:29483/139‑1 (MQ=255)
gCCGGGGTGCATTGTCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTATGGCGCGGTCGGTTGCGGa < 8:832865/140‑1 (MQ=255)
ccGTGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTAATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGAt < 6:543727/140‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 1:305358/138‑1 (MQ=255)
tGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGt < 1:580775/138‑1 (MQ=255)
tGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTaa < 7:284798/140‑1 (MQ=255)
cATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTaa < 4:300393/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 1:67384/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 2:857104/138‑1 (MQ=255)
ctctACCAGGGCCTGACGTCGACGCTGAAACTCTTGCAGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 8:796965/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACTCTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCTGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 7:425778/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 5:600144/140‑1 (MQ=255)
tctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGt < 6:695748/140‑1 (MQ=255)
aCCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTCGTATGGCGCGGGCGGGTGCGGATGAGGTAAGGTGGCGTggg > 6:1023301/1‑139 (MQ=255)
cAGGGCCTGACGGCGACGCGGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCAt < 7:161454/140‑1 (MQ=255)
aGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTACTTCTTGGGGGGTGGGGTGGGGGTGAGTAAAGGTGTCGTgggc > 1:266638/1‑136 (MQ=255)
gCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCATTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACATATTGAGGCTTAGGTTTCGGTTGAGTAAAGGGTTCGTGGCAAAAcc > 6:997841/1‑139 (MQ=255)
ccTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAg < 5:198461/140‑1 (MQ=255)
tGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTCTTGTTGGGCGGTCGCTTTGGGTTGAGTAAAAGTGTGGTGGCATAACAtcg > 5:967000/1‑140 (MQ=255)
tGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTACTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACTTAGGGCGCGGTAGGGTGCGGATTTGTTAAGCGTTGGTGGGATAACAgcg > 8:563194/1‑140 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTa > 7:601179/1‑116 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTATTGCGCGGTCGGTTGCGGATGATTAAAGGTGTCGTGGCATAACAgac > 4:1060183/1‑136 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCgg < 6:805432/140‑1 (MQ=255)
ggCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACTTATGGCGCGGGCGGTTGGGGATGAGTAAAGGTGTCGTGGGATAAAAGcgcg > 1:23863/1‑138 (MQ=255)
ggCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGcgcg < 2:589639/138‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAATGTGTCGTGGCATAACAGCGCGGCAaca < 5:1031641/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAaca < 7:751002/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACGTCTGGGGCGGTAGGGTGCGGGTGAGTAAAGGTGTAGTGGCATAACAGCGCGGCAaca > 8:735021/1‑140 (MQ=255)
cTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTGTGGCGCGGTCGGTTGCGGATGAGTAAATGTGTGGTGGCTTTACAGCGCGGCAaccc > 2:519080/1‑136 (MQ=255)
aaCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGAc < 3:71490/138‑1 (MQ=255)
aaCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGAc < 4:355438/138‑1 (MQ=255)
aCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAATGTGTCGTGGCATAACAGCGCGGCAACACGGACg < 4:807720/138‑1 (MQ=255)
ttGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTTATTGGGGGGGGGGGGGGTGGGGGTGGGTTAAGTTGTGGTGGCCTAACAGCGGCGGAACCCGGCCGtgcgcg > 7:998472/1‑135 (MQ=255)
ttGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTCGGGCGCGGGCGGGTGCGGCTGTGTAAACGGTTGGGGGGATAACCCCGCGGCAACCCGGCCGGAcagg > 5:347413/1‑137 (MQ=255)
gCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTTCTAGAGGCGCGGTCGGGTGCGGCTGAGTAAAGGTGTCGTGGGCAAACAGCCACGCAACCAGGACGTACtag > 2:167166/1‑136 (MQ=255)
gCCGGGATATATCACTCATAACACTCTCCTTACATTTTATGTTTTTAGTGTAGAGTCGGGTTTTGTACCTATCTCGCGGTGCGGTGCGGATGAGTAAAGGTGTCGGGGCGAAACACCGCGGCCACAACGACGAAcaag > 2:1141247/1‑135 (MQ=255)
ccGGGATATATCAATCATAACACTCTCCTTAGATTTTTTGTTTTTAGTGTAGAGTCGTTTTTTGTACTTCTGGCGCTGTCGGTTGAGGATGAGTAAATGTGTCGTGGCATAACAGCGCGGCAACACGGTCGTACTCga < 1:1018803/138‑1 (MQ=255)
cGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACTTCTGGCGCGGTCGGGTGGGGATTAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACCCGGACGGACTAgat > 3:1130478/1‑138 (MQ=255)
gggATATATCACTCATCACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatg < 4:956398/138‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTTGAGTCGGTGTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatg < 1:891186/138‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTCCTTCCGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatg < 4:259395/138‑1 (MQ=255)
atatCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTAAATCGTGCGCCGTCGGTTGCGGATTAGTAAATGTTTAGTGGCATAAAAGCGCGGCCACACCGACGTACTCGAAGAACTCtt > 6:182138/1‑140 (MQ=255)
atatCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTCTTCGGGCGCGGGCGGGTGGGGTTGAGTTAAGGTGTCGTGGCTTAACCGCGCGGCCACCCGGACGTGCGCGCTGCtctcgt > 8:503224/1‑138 (MQ=255)
aCTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGc < 5:838226/140‑1 (MQ=255)
tCATAACACTCTCCTTAGATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGc < 3:613079/138‑1 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAATTATGGCGCGGGCGGTTGCGGATGAGGAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAATCGa > 7:953238/1‑140 (MQ=255)
aTAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTATGGCGCGGTCGGTTTCGGATGACGAAAGGTGTCATGGGATAACAGCGGGGCAACACGGACGTTATCGCTTATCTCTTaaacagcca > 6:606852/1‑134 (MQ=255)
aaCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACTTCTGGGGCGGGCGCGTGCGGATGTGTAAACGTGTCGTGGCATAAAATCGCCGCCACAAGGACGTACTCTATTCACTCTTAAAGCGACa > 4:958477/1‑138 (MQ=255)
aaCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACa > 2:748119/1‑138 (MQ=255)
aaCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTAATTGTGGCGCGGGCGGGTGCGGTTGTGTAAAGGTGTAGTGGCATAAAAGCGCGGCAACCAGGGCGTACTCGTTGATGTCTTCAAGCGACa > 4:464563/1‑138 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGTGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc > 6:728782/1‑140 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg > 8:190504/1‑64 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa < 3:633030/138‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa < 4:184632/138‑1 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTGCTTCTGGGGCGGTCGGTTGCGGATGAGTAAAGGTGTAGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATATCTTCAAGCGACAATTCAAGc > 4:71210/1‑138 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTCTGGCGCGGGCGGTTGGGGATGAGTAAAAGTGTCGTGGGAAAACAGCGCGGCACCACGGACGTACTCCGAGATCTAGTCAAGCGACATATAAAGc > 2:468876/1‑138 (MQ=255)
tACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTc < 6:1008712/140‑1 (MQ=255)
aCATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCtt < 3:1060183/138‑1 (MQ=255)
aCATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTcc < 8:685309/140‑1 (MQ=255)
cATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTc < 1:1085372/138‑1 (MQ=255)
cATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGGACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCt < 7:620197/140‑1 (MQ=255)
ttGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtc < 1:146901/138‑1 (MQ=255)
tttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtct < 6:837493/140‑1 (MQ=255)
tttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGGTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgt < 3:257831/138‑1 (MQ=255)
gtgtAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtcttc < 2:314583/138‑1 (MQ=255)
gtgtAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcggcttc < 2:1084909/138‑1 (MQ=255)
gagTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTaa < 6:1071497/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAATGTGTCGTGGCATAACAGCGCGGCAACACGTACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 2:1078898/138‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 8:591060/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 7:349655/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 1:368545/138‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 1:450298/138‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGGCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 1:781145/138‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTCTCGTGGCAAAACAGCGCGGCAACACTGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 8:129620/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGGTGCGGATGAGTAAAGGTGGCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 5:375338/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 2:433236/138‑1 (MQ=255)
gtGTACTGCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGGCGTTGCATAACAGCGCGTCAACAAGGACGTACTCGATGATCTCTTCAAGCGAGATTTCAAGCTCTTCGTGATATTCGTCTTCGTCGTAACCCAACTg < 2:288511/137‑1 (MQ=255)
aCTTCTGGCGCGGTCTGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGcgcg < 3:387886/138‑1 (MQ=255)
aCTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGcgcg < 3:826356/138‑1 (MQ=255)
aCTTCTGGCGCGGTCGGTGGCGGATGAGTAAAGGTGGCGTGGCATAACAGCGCGGCAACACTGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGcgcg < 2:303869/138‑1 (MQ=255)
tCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGtt > 5:772773/1‑140 (MQ=255)
tCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACATACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTGACCCAACTGCGCGATGtt > 8:386146/1‑140 (MQ=255)
cTGGCGCGGTCGGGTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTa < 6:111540/140‑1 (MQ=255)
cTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCGCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTa < 8:445951/140‑1 (MQ=255)
tGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTATCCCAACTGCGCGATGtt > 1:995395/1‑138 (MQ=255)
cggtcggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGa < 5:640080/140‑1 (MQ=255)
gtcggtTGCGGATGAGTAAAGGTTTCGTGGCATAACAGCGCGGCAACACGGACGTACTCTATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCATCGTCGTAACCCAACAGCGCGATGTTACGCAGAta > 8:484840/1‑139 (MQ=255)
gtcggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACTGACGTACTCGATGCTCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTACCCCAACTGCGCGATGTTACGCAGAtc > 6:223949/1‑140 (MQ=255)
gtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAtcgt < 3:203878/138‑1 (MQ=255)
gtTGAGGATGATTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGTACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAtcgt < 4:844485/138‑1 (MQ=255)
ttGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAtcgtc < 2:946693/138‑1 (MQ=255)
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CGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGATCGTC > NZ_CP022686/1674111‑1674385
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
