Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A28 F11 I0 R1
|
246 |
10296.8 |
9866480 |
98.4% |
9708616 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,674,248 |
T→G |
11.9% |
Q180H (CAA→CAC) |
ygfB ← |
UPF0149 family protein YgfB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,674,248 | 0 | T | G | 11.9%
| 368.9
/ 10.6
| 218 | Q180H (CAA→CAC) | ygfB | UPF0149 family protein YgfB |
| Reads supporting (aligned to +/- strand): ref base T (41/145); new base G (29/3); total (70/148) |
| Fisher's exact test for biased strand distribution p-value = 9.39e-14 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 231 total aligned reads displayed.
CGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGATCGTCGA > NZ_CP022686/1674111‑1674387
|
tGCCGTGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 5:138536/138‑1 (MQ=255)
tGCCGTGGTGCATTTGCTCGACCAGGGCCTGACGGCGACGCTGAAACTCTTTCCGGGATCTATCACTAATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 8:954885/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 6:714961/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 4:1008676/140‑1 (MQ=255)
tGCCGGGGTGCATTTGCTCTACCATGGCCTGACGGCGACGCTGAAACTCTTGCCGGTATATCTCACTCATCACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCgg < 2:54964/140‑1 (MQ=255)
ggCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCTGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 4:513535/139‑1 (MQ=255)
gCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGa < 8:1162393/140‑1 (MQ=255)
gCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGa < 2:997018/140‑1 (MQ=255)
cggggTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAATCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGAt < 3:833334/138‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 6:438199/138‑1 (MQ=255)
ccGGGGTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGAt < 7:269970/140‑1 (MQ=255)
cagggTTGCCTTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGTGATTTATCTCTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGGGCGGTCGGTTGCGGAt < 8:278475/138‑1 (MQ=255)
cGGGTTGGATTTTGTCTAACAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATg < 1:511669/140‑1 (MQ=255)
cGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGa < 5:497219/138‑1 (MQ=255)
ttGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCGTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTATGGGGGGGTCGGGTGGGGATGAGtt > 8:1073951/1‑139 (MQ=255)
cATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTaa < 6:1148623/138‑1 (MQ=255)
tttGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 3:1086734/140‑1 (MQ=255)
tGCTCTAGCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGTTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 6:1101219/138‑1 (MQ=255)
tGCTCTACCATGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 5:309856/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 2:306836/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 1:316685/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 1:909865/140‑1 (MQ=255)
tGCTATACCATGGCCTGACGGCGAAGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTACTGGCGCGGGCGGTGGCGGATGAGTAAAGgtgt < 7:896662/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 1:376740/140‑1 (MQ=255)
aCCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACATGAGGGGCGGTCGGTTGCGGATGGGTAAAGGTGTCGTggg > 8:696672/1‑139 (MQ=255)
cAGGGCCTGACGGCGACGCTGAAACTATTGCCGGGATATATCCCTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCAt < 4:982849/140‑1 (MQ=255)
gCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATg < 4:726627/117‑1 (MQ=255)
gCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTGTTTTTAATTCTGGCGCGGGCGGGTGGGGATGTGTAAAGGTGTGGTGGGGTAACa > 7:929199/1‑140 (MQ=255)
gCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGGACTTCTGGCGCGGTCGGGTGCGGATGAGTAAAGGTGTCGTGGGCTAACa > 2:1141641/1‑140 (MQ=255)
tGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACCCTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTGACTTCTGGCGCGGTCGGGTTCGGATGAGTAAAGGGGTTGGGGCGTAAcctcg > 4:141617/1‑136 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTTCTTCTGGCGCGCGGGGGTGAGGATTTGTAAAAGTGTCGGGGCATAACAgcgcc > 7:313042/1‑139 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCAGGCGCGGGCGGGTGCGGTTGAGTAAAGGTGTCGTGGGCGAAAAGcgcg > 3:1214177/1‑140 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGCTTTTTTTTATTCAGGCGCCGGTGGGGGCGGGTCTGTAAAGGTGTCGTGGCACACAAGcgcg > 3:778980/1‑140 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATTACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTAGGTTTTTGTACTTCTTGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCgg < 7:1071157/140‑1 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACCTTTTTTGGTTTTACTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTATAGGGGGCGTGTCATAACAGCGCgg < 1:1074410/140‑1 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCgg < 7:36134/140‑1 (MQ=255)
ggCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACcgcgcg > 6:916032/1‑138 (MQ=255)
ctaCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCaa < 3:254591/138‑1 (MQ=255)
aagCTGAAACTCTTGCCGTGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCaa < 6:535246/136‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGTATATATCACTCATAACACTATCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGGGGTAGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGAGGCaa < 6:52204/138‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCaa < 5:167575/138‑1 (MQ=255)
tGAAACTCTTTCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCTGATGAGTAAAGGTGTCGTTGCATAACAGCGCGGCAACACGGa < 3:646524/140‑1 (MQ=255)
tGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCTGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGa < 4:786746/140‑1 (MQ=255)
aaaCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACg < 2:72405/140‑1 (MQ=255)
aaaCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACg < 7:655850/140‑1 (MQ=255)
gggATATATCACTCATAACTCTCTCCTTACCTTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTCTGGCGCTGGCGGTTGCGGATGAGTAAAGGTGTCGTTTCATAACAGCGCGGCAACACGGACGTACTCgatgat < 4:89886/140‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatgat < 8:649027/140‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatgat < 2:944771/140‑1 (MQ=255)
atatatCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTACATAATGGGCCGTCGGGTGCGGGTGAGTAAATGTGTCGTGGCATAAAAGCGCGGCCACACCGCCGTTCGCgatgatatg > 1:178066/1‑137 (MQ=255)
atatatCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTAATTCTGGGGCGGTCGGGTGCGGTTGTGTAAATGTGTGGTGGGATAACCGCGCGGCCACCCGGGCGTACTAGATGAtctg > 3:1257073/1‑139 (MQ=255)
aCTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACGTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGc < 4:61126/140‑1 (MQ=255)
cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACGTCTGGCGCGGGGGGTTGCGGATGAGGAAAGGTGTCGGGGGAAAACAGCGCGGCAACACGGGCGTACTCGATGATCTCTTCAAgag > 2:48406/1‑138 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTAATTATGGCGCGGGGGGGTGCGGATGAGTAAATGTGTCGTGGCCTAACAGCGCCGCAACACGGACGTACTCGATGATCTCTTCAAGCgc > 3:193635/1‑139 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGTGTAAAGGTGTCGTGGAATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGa < 7:419655/140‑1 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCGGGCACCGTCGGTTGCGGATTAGTAAAGGTGTAGTGGCCTAACAGAGCGGAAACACCGCAGGACGCGCTGATCTCTTCAAGCGa > 4:528198/1‑140 (MQ=255)
aTAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTTCTTCTTGCGCGGTCGGGTGGGGATGAGTTAAAGTGTGGTGGGTTAACACCCCGGCAAAACGGTCGTACTAGAAGATATATTAAAGCgcaa > 2:195088/1‑137 (MQ=255)
aaCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACAtt < 8:568039/140‑1 (MQ=255)
acacTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACAttt < 2:1009790/140‑1 (MQ=255)
tgtcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAg < 7:1107297/138‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTTGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc > 8:283388/1‑140 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTATAGGTGTCGTGGCATAACAGCGCTGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 4:446537/140‑1 (MQ=255)
tcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGct < 3:682467/140‑1 (MQ=255)
tcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGct < 1:354397/140‑1 (MQ=255)
tcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTATGGCGCGGTCGGTTGGGGATGAGGAAAGGTGTCGTGGCCTAACAGCGCGGCCACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGcg > 7:525651/1‑139 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGATTCGGTTTTTGTACTTCTGGCGCGTTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 6:857901/138‑1 (MQ=255)
ttACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGGTGCGGAGGTGTTATGGTGTCGTGGCATAACAGCGCGGCAACCCGGACGTACTCGATGATCTCTTAAAACGACATTTAAAGcta > 6:602579/1‑137 (MQ=255)
ttACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTATGGGGCGGTCGGGTGGGGATGTGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACCGCCGTACTCGATGATCTCTTAAACCCCCATTTAAAGctc > 5:713651/1‑138 (MQ=255)
aCATTTTTTGTTTTTTGTGGAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGTATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTcc < 8:773544/140‑1 (MQ=255)
aCATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCtt < 5:562200/138‑1 (MQ=255)
aTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTTATTCTGGCGCGGGCGGTTGGGGATGAGTAAATGTGTCGTGGCATAACACCGCGGCCACACGGACCTACTAGATGATCTCTTGAAGCGACATTTCAAGcaagtac > 6:205819/1‑132 (MQ=255)
ttttttGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGTCGCGGGCGGTTGCGGAGGAGTAAAGTTTTCGTGGCATAACAGCGCGGCAACAACGCCGTACTCGAGGATCTCATAAAGCGACAGTTCAATCTCTTCCTGa > 4:112492/1‑140 (MQ=255)
ttttGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 7:1092484/67‑1 (MQ=255)
ttttGTTTTTAGTGTAGAGTCGGGTTTTGTACATCTTGCGCGGGCGGTTGCGGAAGCATAAAGGGGGCGTGGCATAACCTCCCGGCACCACGGACGTACTCGATGCTAACATGAAGCGACCTTTCAAACTCATcaagatg > 8:417846/1‑134 (MQ=255)
ttGTTTTTAGTGTAGAGTCGGGTTTTGTTCTTATGGGGCGGTGGGGTGCGGATGAGTAAAGGTTTCGTGGCATAACATCGCGGGCACACGGACGTACTCGATTTTATCTTCAATCGCCATTTTAAGCTCGTGCTggtgtt > 4:817225/1‑135 (MQ=255)
ttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtc < 6:1037751/138‑1 (MQ=255)
ttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtctt < 1:1131747/140‑1 (MQ=255)
gtAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTATAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTtcgtcg < 8:991701/140‑1 (MQ=255)
gtAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATcttcgtcttcgt < 5:397226/138‑1 (MQ=255)
gtAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTtcgtcg < 3:942241/140‑1 (MQ=255)
gTCGGTTTTTGTACTTCTGTCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAAcc < 1:1055503/140‑1 (MQ=255)
ggTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCaa < 1:91253/140‑1 (MQ=255)
ggTTTTTGTAATTCTGGCGCGGTCGGGTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAAccc < 6:286123/138‑1 (MQ=255)
ggttttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTAGTGGAATAACAGCCCGGCAACACGGACCTACTCGATGATATCTTCAATAGCCATTTAAAGATCTACCTGATCTTCGTATTCGAAGTAACCCAAc > 8:372843/3‑140 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 1:238314/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 1:664393/140‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGGCGTGGCATAACAGCTCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTg < 5:225245/138‑1 (MQ=255)
ttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGGCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcg < 7:242614/140‑1 (MQ=255)
tctACTTCTGGCGCGTTCGTTTGCGGAGTATTAAAGGTGTCGTGGGATAACAGCTCGGCAACACGGACGTAATCGAGGATCTCTTCAAGCGACATTTCAAGCTCTTACTGATCTTCGTCTTCGTCGTAACCCAACTgc < 5:801007/136‑1 (MQ=255)
gTACTTCTGGCGCGGGAGGTTGCGGATGAGTAAAGGTGTCGTGGCATCACAGCGCGGCAACACGGACGTACTCGATGAGCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGcgcg < 2:1208281/140‑1 (MQ=255)
tACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTgcgc < 5:280608/138‑1 (MQ=255)
attCTGGCGCGGTCGGGTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACCGACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATg < 7:372843/139‑1 (MQ=255)
tCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCACGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCATAACCCAACTGCGCGATGtt > 8:474116/1‑140 (MQ=255)
tCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGtt > 3:435981/1‑140 (MQ=255)
tCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGtt > 1:1021260/1‑140 (MQ=255)
gggtcggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGa < 3:482032/139‑1 (MQ=255)
cggtcggtTGCGGATGAGTAAAGGTGTCGTGGCATAGCAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCa < 6:796317/138‑1 (MQ=255)
cggtcggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCTATGTTACGCAGa < 4:286978/140‑1 (MQ=255)
gtcggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGCTCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAtc > 7:25529/1‑140 (MQ=255)
gtcggtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGACGTAACCCAACTGCGCGATGTTACGCAGAtc > 4:951289/1‑140 (MQ=255)
gtTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCGCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGAtcgtcg < 8:745789/140‑1 (MQ=255)
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CGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACTGCGCGATGTTACGCAGATCGTCGA > NZ_CP022686/1674111‑1674387
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
