Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A27 F36 I0 R1
|
164 |
7919.5 |
7665810 |
98.4% |
7543157 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,049,089 |
T→G |
9.7% |
N256T (AAC→ACC) |
deaD ← |
ATP‑dependent RNA helicase DeaD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,049,089 | 0 | T | G | 9.7%
| 353.8
/ 7.7
| 175 | N256T (AAC→ACC) | deaD | ATP‑dependent RNA helicase DeaD |
| Reads supporting (aligned to +/- strand): ref base T (18/135); new base G (18/3); total (36/139) |
| Fisher's exact test for biased strand distribution p-value = 6.34e-12 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 177 total aligned reads displayed.
GTCGCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGAC > NZ_CP022686/2048951‑2049223
|
gtcgCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑Gtt > 8:21533/1‑140 (MQ=255)
cgCAATCAGGAAGTCCAGACGACCATCTTTCAGGAGTTCCATTTTCTGCTCAAGCAGCGCCTGGTTCATGTCACCGATCAGCGCGGCGCTGTTGTTGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCTC‑Gtttt > 8:642569/1‑140 (MQ=255)
aTCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGt < 4:891944/140‑1 (MQ=255)
aTCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGt < 4:952877/140‑1 (MQ=255)
tCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCCGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTGCTGCCACTTCCAGAGTCGC‑GTTTTTGGTa < 4:520361/140‑1 (MQ=255)
tCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTa < 2:362406/140‑1 (MQ=255)
tCAGGAGGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTa < 1:102063/140‑1 (MQ=255)
tGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTacgaacg < 3:184025/140‑1 (MQ=255)
tGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTacgaacg < 1:567923/140‑1 (MQ=255)
tCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTGTTcggacgaa > 8:422226/1‑140 (MQ=255)
tCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTTggaaccaa > 3:795974/1‑140 (MQ=255)
tCCAGACGAACATCTTTCAGGCGTACCAGTGTCTGCACACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCCCTTCCAGAGTCGC‑GGTTTTTGTtcaaacgac > 1:911296/1‑139 (MQ=255)
cAGACGACCATCTTTCAGCCGTTCCAGTGTCTGCTCACGCATCGCCTGGATAATGTCACAGATCAGCCCGGCGCTGTTGAAGCCCTTAAGCTCAAGCCCATCAGCCACTACCAGAGAAGC‑CTATTTTGAAcgaaggaatc > 2:436998/1‑138 (MQ=255)
gacgacCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGCGTCGC‑GTGTTTTGTgcgaacgcacaat > 8:77981/1‑134 (MQ=255)
gacgacCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTGGT‑CGAACGCAGaaa > 1:985047/1‑138 (MQ=255)
cATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTTAGAAAGCAGGTAAtaccc > 3:304822/1‑136 (MQ=255)
cATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGGCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATcgcc < 7:866224/140‑1 (MQ=255)
ttCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTGTTTTGTTCGTACGTAGAAAAAAACCGCATAAAAATAtt > 7:516762/1‑140 (MQ=255)
ttCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGGTTTGGTTCGAACGAAGATAATAGCCGCGTCAAAATcat > 8:596656/1‑138 (MQ=255)
tCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGTTTAGGAAGAGGTTAATAGCCGCATCAAAATAtta > 5:488475/1‑139 (MQ=255)
cTGCTCACGCAGCGCCTGGTTCATGTCACCGCTCAGCGCGGCGCTGTTGCAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCa < 1:69884/140‑1 (MQ=255)
caagCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTAAGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑TTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGaaa < 1:626331/137‑1 (MQ=255)
cACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGaaa < 3:827280/140‑1 (MQ=255)
cGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAAAAGCCGCCTCAAAATATTCCGCTTGCCGGAAACg > 6:441372/1‑140 (MQ=255)
cgcCGGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCa < 5:861645/140‑1 (MQ=255)
ggTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTTAGCAAGAAAATAATCGCCGCCTCAAAATATTACGCGTACAGGAAACCTACCACTGCt > 7:389572/1‑140 (MQ=255)
gTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAATAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCtt < 8:489736/140‑1 (MQ=255)
gTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCtt < 5:131632/140‑1 (MQ=255)
gTTCATGGCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCtt < 6:45714/140‑1 (MQ=255)
gacACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTTCCACTTCCAGAGTCGC‑GTTTTTGGTACTAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGtttt < 1:701022/138‑1 (MQ=255)
gTCACCGTTCAGCTCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATTATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGtttt < 1:895105/140‑1 (MQ=255)
gcACCGGTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACATCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGttttt < 2:73615/139‑1 (MQ=255)
cGTTGAGCGCGGCGCTGTTGTAGCCGTTACGCTCTAGAGCTTCTGCCACTTCCAGAGTCGC‑TTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACga < 1:626876/140‑2 (MQ=255)
cGTTCAGCGCTGCGCTGTTGTAGCCGTTACGCTCTAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTACGCTTCCAGGAAACGTTCCAGTGCTTCGTTTTTACGc < 8:262907/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGTTACGAACGAAGATAATAGCCGCATAAAAAACTTACGCTTACAGGAAACGTACCAGGGCTTCGGTTTTTCGc > 4:464111/1‑140 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 4:316384/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 8:328512/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 4:568639/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 5:19470/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 5:830562/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 7:122911/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 1:209029/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 2:146622/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 1:151812/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 2:194978/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 3:464164/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTGTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 2:654140/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTGTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 4:942301/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTACAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 5:275241/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCAGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 7:613159/140‑1 (MQ=255)
cGTTCAGCGCGGCGATGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTACAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 4:16392/140‑1 (MQ=255)
cGTGCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCAGCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 4:404414/140‑1 (MQ=255)
gTTCTGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCa < 8:470086/140‑1 (MQ=255)
gTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCa < 1:675111/140‑1 (MQ=255)
ttCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTTAGAACGAAGATAATAGACGCATCAAAATATTACGCTTCCAGGAAACCTACCAGTGCTTGGttttttagaca > 6:480177/1‑134 (MQ=255)
aGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATAcc < 5:705671/140‑1 (MQ=255)
aGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTTCGAACGAAGATAATAGCCGCAACAAAATATTACGCGTACCGGAAACGGACCAGTGCTTGGGTTTTTAGCATAcc > 4:137099/1‑140 (MQ=255)
gcggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCa < 7:327059/140‑1 (MQ=255)
ggcgCTGTTGTCGCCGTTACGCTCAAGAGCTTATGCCACTTCCAGAGGCGC‑GTTTTTGGTACGAACGACGATAATCGCCGCATCAAAATGTTCCGCTTCCAGGATACGTACCAGTGCTTCGTTTTTACGCATACCACAGa < 4:379114/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCCAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 7:540746/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCATGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGGTTCGTTTTTACGCATACCCCAGa < 3:697011/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAATAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 7:863988/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 3:571904/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 7:878283/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 6:495451/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 4:457033/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 2:203495/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 2:861404/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 5:480177/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 4:101596/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 8:747540/140‑1 (MQ=255)
ggcgCTGGTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCCGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCACAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 6:219899/140‑1 (MQ=255)
gccgcTGTTGTAGCCGTTACGCTCAAGAGATTCTGCCACTTCCAGAGTCGA‑GTTTTTGGTACTAACGAAGATATTAGCCGCATCAAAATCTTCAGCTTCCAGGAAACGTACCAGTGCTTCTTTTTTACGCATACACCAGa < 2:580804/138‑1 (MQ=255)
cgcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTTAGAAAGAAAATAAACGCCGCAAAAAAAACATACGCGTACCGGACACGGACCAGGGCGTGGGTTTTTAGCGAACCCCAGAcc > 6:592220/1‑139 (MQ=255)
gcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACTAAAGTAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAg < 7:456610/140‑1 (MQ=255)
gcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAg < 2:946975/140‑1 (MQ=255)
tttatccGTTACGCTCAAGAGCTTCTGCCACTTCCATAGTCGC‑GGTTTTGGTACGAACGAAGATAATCGCCGGATCAAAATCTTCCGCTTCCCTGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAg < 1:488420/135‑1 (MQ=255)
tgtAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAg < 5:416140/140‑1 (MQ=255)
tgtAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAg < 2:702008/140‑1 (MQ=255)
tgtAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAg < 6:689670/140‑1 (MQ=255)
gCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGGACGAAAGAAGAAAATAGCCCCCTCAAAATATTCAGCTTACAGGAAACGTACCCGTGGTTCGTTTTTTCGGCGAACCCCGACAGTcccggggg > 2:56226/1‑134 (MQ=255)
ccGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGct < 7:720644/140‑1 (MQ=255)
ccGTTACGCGCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGct < 5:241535/140‑1 (MQ=255)
tACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTGGT‑CGACCGAAGATTATAGCCGCCAGACAATAATCCGCGTCCCGGGAACGGGACAGTTGATGGTTTTTTGGCCTACCCCAGAAAGGCCAGTCGcgcagg > 6:159747/1‑135 (MQ=255)
ctcTCCAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAACCGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCt < 5:652275/138‑1 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCt < 2:975131/140‑1 (MQ=255)
cGCTCAAGAGCTGCAGCCACTTCCCGAGTCGC‑GTTTTTGGTACGAACGAATATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACCGTCCAGTAGCTCTGGCt < 6:913184/140‑1 (MQ=255)
gCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCCGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAgg < 2:840157/140‑1 (MQ=255)
gCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAgg < 1:225079/140‑1 (MQ=255)
cTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGa < 5:45400/140‑1 (MQ=255)
cTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTACGCACGAAGATAAAAACCGCATAAAAAAATTACGCATACAGGGAACCTACCAGTGGTTGGGTTTTAAGCAAACCCCCGACAGTCCAGTAGGTCGGGCGGAGGTGAggc > 4:19613/1‑139 (MQ=255)
tCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAATATAATCGCCGCATCAAAATCTTCCGCTGCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACg < 7:263826/140‑1 (MQ=255)
tGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACggg < 1:10886/140‑1 (MQ=255)
gCCACTTCCAGAGTCGC‑GTTTTTTGTAAGAACGAAGATAATAGCCGCAAAAAAAAAATACGCATACCGGAAACCTACCAGAGCTTAGTTTTTAAGGATACCCCAGACAATCCAGTAGCTCGGGGAGATGTAAGGACgggg > 2:469586/1‑139 (MQ=255)
cACTTCCAGAGTCGC‑GTTTTTGGTACGAAAGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTATACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAg < 5:623627/140‑1 (MQ=255)
aCTTCCAGATTCGC‑TTTTTTGTTACTAACGAATATAATCTCCGAATCAAAATCGTCCGCTTCCAGGAAACGTAACAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATTTCAGGACGGGTAGt < 8:108211/140‑1 (MQ=255)
ccAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACg < 2:178080/140‑1 (MQ=255)
ccAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTGCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACg < 7:638933/140‑1 (MQ=255)
tCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGAc < 1:299048/140‑1 (MQ=255)
gcgc‑gTGTTTCGTACGACCGACGCTAATCGCAGCATCAACATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGAc < 4:738723/139‑1 (MQ=255)
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GTCGCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGAC > NZ_CP022686/2048951‑2049223
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
