Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A28 F35 I0 R1
|
174 |
9808.2 |
8488800 |
98.4% |
8352979 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,049,089 |
T→G |
12.6% |
N256T (AAC→ACC) |
deaD ← |
ATP‑dependent RNA helicase DeaD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,049,089 | 0 | T | G | 12.6%
| 354.3
/ 14.8
| 182 | N256T (AAC→ACC) | deaD | ATP‑dependent RNA helicase DeaD |
| Reads supporting (aligned to +/- strand): ref base T (15/140); new base G (24/3); total (39/143) |
| Fisher's exact test for biased strand distribution p-value = 9.58e-17 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 182 total aligned reads displayed.
TCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGA > NZ_CP022686/2048958‑2049226
|
tCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCTCTTCCAGAGTCGC‑GTTTTTGGTa < 5:535573/140‑1 (MQ=255)
tCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGtt > 4:526841/1‑139 (MQ=255)
gATGTCCAGACGCCCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTacgga > 3:230811/1‑138 (MQ=255)
gATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTacg‑aa < 7:437513/140‑1 (MQ=255)
tCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAACAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTTTAcg‑aaccaa > 3:187277/1‑140 (MQ=255)
tCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGACGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTGTTcg‑aacgaa > 8:552058/1‑140 (MQ=255)
cAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTGTAAG‑AACGAAGa > 4:1040189/1‑140 (MQ=255)
tCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTGTTGGTACG‑AACGAAGATaaaagcc > 2:123081/1‑133 (MQ=255)
tCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTGCG‑CACGAAGATTATcgcc > 1:606650/1‑138 (MQ=255)
cctggCTTTACAGGGTCTGCTCACGCAGCGCCTTGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAATAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGAACG‑ACCGAAGATAATCGCCGCATCa < 6:156125/137‑1 (MQ=255)
ttCCAGTGTCTGCTCACGCAGCGCCTGTTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCtt < 4:967564/140‑1 (MQ=255)
ttCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCTAGAGCGTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTAAG‑AAGCACGATTATCTCCGCCTCaaaaaagt > 8:251160/1‑136 (MQ=255)
ttCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTTCG‑AACGAAGAAAATAGCCGCATAaaaaacat > 6:137753/1‑136 (MQ=255)
ttCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGGTTTTGTTCG‑AACGGAGATTATAGCCGCATCAAAATCtt > 5:702206/1‑140 (MQ=255)
ttCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGGTTTTGGACGCCACG‑AGATAAAGGCCGCATCaaaaacaa > 7:761657/1‑136 (MQ=255)
tCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTGGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTc < 8:517834/140‑1 (MQ=255)
ccAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGGTCG‑CACGCAGATAATAGCCGCATCAAAAtaat > 2:193332/1‑135 (MQ=255)
cTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTc < 2:550748/138‑1 (MQ=255)
cTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCa < 3:944317/140‑1 (MQ=255)
tGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTTCG‑AAAGCAGGAAATAGGCGCCTGAAAATATTACGcgtgaag > 8:386435/1‑134 (MQ=255)
gCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCa < 2:1092982/138‑1 (MQ=255)
cACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGaaa < 3:997075/140‑1 (MQ=255)
cACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGa < 2:614174/138‑1 (MQ=255)
cAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCACGAGCTTCTGCCACTTCCAGAGTCGC‑GGGTTTGTGTCG‑GACGAAGATAATAGCCGCAGCCAAATCATGAGCGTCCCCGAAAC‑g > 1:693936/1‑138 (MQ=255)
cgcCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTAc < 2:899938/138‑1 (MQ=255)
gcCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTGTAAG‑AAAGAAGATAATGGCCGCATAAAAATATTACGCTTACAGGAAAC‑GTAACAg > 6:613405/1‑140 (MQ=255)
gcCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTTCG‑AACACAGATAATCGCCCGCTCAAAAAATTACGCGTCGAGGAAAC‑ggaac > 1:845729/1‑134 (MQ=255)
gTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCtt < 7:578054/140‑1 (MQ=255)
tCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCtt < 2:930388/138‑1 (MQ=255)
aTGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTTAG‑AACGAAGAAAAAAGCCGCATCAAAAACTTGCGCGTCCAGGAAAC‑CGACCACTGCttaggt > 3:762562/1‑136 (MQ=255)
gTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGtttt < 4:45432/140‑1 (MQ=255)
tCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCATAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGttttt < 8:795201/140‑1 (MQ=255)
cGTTCCGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 6:854598/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTATCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGTGTCGC‑GTTTTTGGTACG‑ATCGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCATGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 6:636848/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTATCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTGCGTTTTTAc < 2:597652/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTTAG‑AACGAAGAAAATAGCCGCCTCAAAATAATACGCGTGCAGGAAAC‑GTACCAGGTCGTCGTTTTTACGc > 3:962642/1‑140 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTAc < 2:415142/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTAc < 2:1023892/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTAc < 2:751751/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTAc < 1:130166/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 3:709831/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 5:1030124/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 5:392801/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 6:1008145/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 8:729219/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 6:579936/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 6:956425/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 4:190929/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 8:425534/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 4:1000769/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 3:1008652/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 3:473928/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 6:906604/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACATCCAGATTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCTCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 6:512728/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCAGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 3:910473/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTGCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 8:31699/140‑1 (MQ=255)
cGTTCAGCGCGGCGATGTTGTAGCCGGTACGCTCAAGAGCTTCTGCCACTTCAAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 7:614707/140‑1 (MQ=255)
cGTTCAGCGAGGCTCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 6:478754/140‑1 (MQ=255)
cGTGCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATACTCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTAc < 2:803787/138‑1 (MQ=255)
cGTGCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 4:853499/140‑1 (MQ=255)
cGTGCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 4:277819/140‑1 (MQ=255)
cGTGCAGCGCGGAGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACATCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAATTCTTCCGCTTCGAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 4:425456/140‑1 (MQ=255)
ttCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCAt < 4:484733/140‑1 (MQ=255)
tgcAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCTC‑GTTTTTGGTACG‑AACGAAGATAATCTACGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCTGTGCTTCGTTTTTACGCAt < 7:876470/138‑1 (MQ=255)
cggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGGTTTTGTTGG‑AACGAAGATAATAGCCCCATCAAAATATTGCGCTTACAGGAACC‑GTTCCACTGCTTAGTTTTTTCGCATTcccc > 2:554621/1‑138 (MQ=255)
cggcgCTGTTGTAGCCGTTACGCGAAATAGCTTATGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAg < 4:70164/140‑1 (MQ=255)
ggcgCTGTTTTTGCCGTTTCGCTCAAGAGCTTCTGGCTCTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGTTAATCGCCGCATCATAATCTTCCGCTTCCAGGATTC‑GTACCTGTGCTTCGTTTTTACGCATTccggaga < 8:684806/140‑6 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCa < 1:717453/138‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 3:838253/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 6:810807/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 7:483213/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 5:959221/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 5:68006/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 5:607024/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 5:345183/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTACGTTTTTACGCATACCCCAGa < 7:909242/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTGCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCa < 1:1001511/138‑1 (MQ=255)
gcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAg < 7:128206/140‑1 (MQ=255)
gcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAg < 6:539956/140‑1 (MQ=255)
gcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAg < 4:164488/140‑1 (MQ=255)
gcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTGTTGGTACT‑AACGAAGATAATAGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAg < 4:57215/140‑1 (MQ=255)
tgtAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAg < 6:678181/140‑1 (MQ=255)
cGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑TACGTAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGATAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGctc < 5:179873/140‑1 (MQ=255)
tACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTGTTAC‑‑CACGAAGATTAAAGCCGCATCAAAAACTTACGCATCCAGGAAACGGTAAC‑CTTCTTGGTTTTTTAGCCTGACCCCGACAGTCCAGGAGcggtgg > 4:699125/1‑135 (MQ=255)
cGCTCACGAGCGTCTGCCACATACAGATGCGC‑GTTTTTGGTAAG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCt < 6:198239/140‑1 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGGACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTgg < 1:1046769/138‑1 (MQ=255)
gCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTg < 6:351793/140‑1 (MQ=255)
gCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATCCCCCAGACAGTCCAGTAGCTCTGGCTGATGTCa < 1:380985/138‑1 (MQ=255)
tGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACggg < 6:245960/140‑1 (MQ=255)
cACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGt < 2:846322/138‑1 (MQ=255)
cACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAg < 8:218684/140‑1 (MQ=255)
cACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCATCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATCCCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAg < 3:229323/140‑1 (MQ=255)
aCTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTa < 1:552021/138‑1 (MQ=255)
tCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCAc < 4:505436/140‑1 (MQ=255)
ccAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCTCCTCATCAAACTCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACg < 4:212992/140‑1 (MQ=255)
ccAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACg < 3:883460/140‑1 (MQ=255)
tCGC‑GTTTTTGGTACG‑AACGAAGATACTCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTgg < 2:324934/138‑1 (MQ=255)
tCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTgg < 1:283304/138‑1 (MQ=255)
gcgc‑gTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGAc < 3:629582/139‑1 (MQ=255)
c‑gTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCATCCAGGACTC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGa < 5:251825/140‑1 (MQ=255)
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TCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACG‑AACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGA > NZ_CP022686/2048958‑2049226
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
