Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A30 F36 I0 R1
|
275 |
10897.2 |
10515506 |
98.4% |
10347257 |
135.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,049,089 |
T→G |
21.0% |
N256T (AAC→ACC) |
deaD ← |
ATP‑dependent RNA helicase DeaD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,049,089 | 0 | T | G | 21.0%
| 346.0
/ 46.1
| 220 | N256T (AAC→ACC) | deaD | ATP‑dependent RNA helicase DeaD |
| Reads supporting (aligned to +/- strand): ref base T (18/152); new base G (47/3); total (65/155) |
| Fisher's exact test for biased strand distribution p-value = 2.95e-29 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 223 total aligned reads displayed.
GTCGCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGA > NZ_CP022686/2048951‑2049226
|
gtcgCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑Gtt > 8:957184/1‑140 (MQ=255)
cgCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑Gtttt > 6:641926/1‑140 (MQ=255)
cgCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑Gtt > 3:1053189/1‑138 (MQ=255)
tCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTa < 8:668845/140‑1 (MQ=255)
aGGATGTCCATACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTa < 4:851940/138‑1 (MQ=255)
aGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGtt > 4:29221/1‑137 (MQ=255)
tGTCCTGAGGACCATCTTTCAGGCGTTCCAGTGTCTTCTCACGCATCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTGCTGCCACTTCCAGAGTCGC‑GTTTTTGGTacgaa < 4:679425/138‑1 (MQ=255)
tCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTtcgaacgca > 6:1128944/1‑138 (MQ=255)
gacgacCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGGTCGAAAGAAGATa > 8:155705/1‑140 (MQ=255)
gacgacCATCTTTCAGGCGTTCCAGAGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTATCCGTTACGCTCAAGAGCTTCAGCCACTTCCAGAGTCGC‑GTGTTTGGTaagaacggaataa > 7:196243/1‑134 (MQ=255)
ccATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATcgc < 7:896236/140‑1 (MQ=255)
tCTTTCAGGCGTTCCAGTGTCTGCTCCCGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTGTTTGGAAGAACAAACATaaaaacccc > 6:82098/1‑133 (MQ=255)
tCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTGTa > 7:622896/1‑120 (MQ=255)
tCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTGTTTTGTTAGCAAGAATATAATagcc > 1:103943/1‑138 (MQ=255)
tttCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTTCGTAAGAAaataataacccc > 1:161227/1‑132 (MQ=255)
tttCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTAACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAATAGCTTCTTCCTCTTCCAGAGTCGCTGTTTTTGGT‑CGAAACAACATAATagccgc > 2:115837/1‑138 (MQ=255)
ttCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGGCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATc < 1:1281730/138‑1 (MQ=255)
tCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCt < 1:118433/138‑1 (MQ=255)
ccAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGGTTTTGGAAC‑CACGCAAATAAACGCCCCCTCaaaaaaaa > 4:354144/1‑134 (MQ=255)
ccAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTTAGTACCACTCTAATAGCCGCAGCaaaaaatt > 3:1234822/1‑134 (MQ=255)
ccAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACGTCCAGAGTCGC‑GGTTTTGGTTCGCTCGAAGGATATAGCCGCAGCaaaaacatac > 6:1161087/1‑134 (MQ=255)
cAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTc < 3:535664/138‑1 (MQ=255)
cTGCTCACGCAGCGCCTGGTTCATGTCACCGTGCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGGCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCa < 7:1193898/140‑1 (MQ=255)
gCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCa < 2:883181/138‑1 (MQ=255)
gCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAgg < 6:1220763/140‑1 (MQ=255)
cTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGGACGAACGAACATAATCGCCGCATCAAAATAATACGCTTcccc > 2:553643/1‑136 (MQ=255)
cACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGaaa < 6:948163/140‑1 (MQ=255)
cACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGaaa < 5:538615/140‑1 (MQ=255)
cgcgcCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGt < 1:43895/137‑1 (MQ=255)
tGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTAAGAACGAACATAATCTCCGCATCAAAATATTGCGCGTGCAGGAAACGGACCA‑Gt > 2:848390/1‑138 (MQ=255)
gTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCtt < 5:291897/140‑1 (MQ=255)
gTTCATGTCACCGATCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGc < 1:505535/138‑1 (MQ=255)
gTCACCGTTCAGCGCGTCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGtt < 1:281676/138‑1 (MQ=255)
gTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTAAGAACCAAAAAAATAACCGCCAAAAAATATTACCCATGCAAGAAACAGACCA‑ATGcatgggt > 2:638104/1‑132 (MQ=255)
cACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTGTTTTGTTCGAACGCAAAATATAGCCCCATCAAAAAATTACGCTTCCAGGAAACCTAACA‑CAGGTTCGgttt > 1:940179/1‑138 (MQ=255)
cACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTTAGAACGAAGATAATAGCCGCATCAAAATATTACGCTTCCAGGAAACGTACCA‑GTGCTTAGtttt > 2:982493/1‑138 (MQ=255)
ggTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTAc < 4:1221730/137‑1 (MQ=255)
ggTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTAc < 2:148780/137‑1 (MQ=255)
ctttCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGc < 6:421157/138‑1 (MQ=255)
ctttCAGCGCGGCGATGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTAc < 2:29487/136‑1 (MQ=255)
cGTTCAGCGGGGCGCTGTTGTTGCCGTTACGCTCTAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTAGGAACGAATATAATCGCCGCATCAAAATATTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGc < 6:486461/140‑1 (MQ=255)
cGTTCAGCGCGGCGGTGTTGTAGGCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGc < 6:169882/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTGAAGAGCTTCTGCGACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATATTCGCCGCATCAAATTCTTCCGCTTCCAGGAAACGTTCCA‑GTGCTTCTTTTTTAc < 4:652401/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGTATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTAc < 3:447215/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTAc < 4:1177031/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTAc < 1:789752/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTAc < 2:1130367/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTAc < 2:575798/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGc < 8:1129396/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGc < 5:809473/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGc < 8:456571/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGc < 5:1178607/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGc < 5:1011846/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGc < 8:797483/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGc < 8:777715/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTGCGTTTTTAc < 2:1219828/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTGTTTGGTACGAACGAAGATAATCGCCGCATCAAAAGCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTAc < 4:339262/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGATCAAGAGCTTATGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCAAGGAAACGTACCA‑GTGCTTCGTTTTTACGc < 5:69689/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCAGTTACGCTAAAGAGCTTCTTCCACTTCCAGAGTCGC‑GTTTTTGGTACGATCGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGc < 8:639658/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGGTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGATGCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGc < 6:361509/140‑1 (MQ=255)
cGTGCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTGGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTAc < 4:574455/138‑1 (MQ=255)
cGTGCAGCGCGGCGCTGTGGTAGCCGGTACGCGCAAGAGCTTCTGCCACTTCCCGAGTCGC‑GGTTTTGGAACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GCTCTTCGTTTTTAc < 3:789625/138‑1 (MQ=255)
gTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGCa < 5:364406/140‑1 (MQ=255)
aGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCAGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGCATa < 4:193138/138‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCCGAGTCGC‑GTTTTTGGTACGAACGAAGATACTCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGCATACCCCAGa < 8:605389/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGCATACCCCa < 4:46177/138‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGCATACCCCa < 4:1272941/138‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCAACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGCATACCCCAGa < 7:684584/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCGTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGCATACCCCAGa < 6:234406/140‑1 (MQ=255)
ggcgCTGTTGTAGCAGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGCATACCCCAGa < 6:552651/140‑1 (MQ=255)
ggcgCTGTTGTAGCAGTTACGCGGAAGAGCTTCTGCCACTTCCAGTGTCGC‑GTTTTTGGTAGGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGCATACCCCAGa < 7:494907/140‑1 (MQ=255)
ggcgCGGTTGTAGCCGTTCCGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGAATCAAAATCTTCCGCTTCCCGGAAACGTACCA‑GTGCTTCGTTTTTACGCATACCCCAGa < 6:1092431/140‑1 (MQ=255)
cgcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTGTTAGGAA‑GAAGGTTATCGCCGGATGAAAATCTTGCGGGTGCAGGGAAAGGACCA‑GTGCTTGGGTGTTAGGGATACCCCAGAcc > 8:128008/1‑139 (MQ=255)
cgcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTTCGAACGAAGATTATCACCGCATCAAAATCTTACGCGTCCAGGAGACGGACCA‑GGGCTTGGTTTTTTCGCCTACCCCAGAcc > 6:201035/1‑139 (MQ=255)
cgcTGTTGTAGCCGTTACGCTAAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTACGAACCAAGATAATGCCCGCCTCAAAAACTTACGCGTGCAGGGAACGTAACAGGGGGTACGTTTTTA‑GCATAACCCacgca > 8:1012202/1‑136 (MQ=255)
tgtAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTTCGAACGAAGAAAATCGACGCATCAAAATCTTCCGCTTCCATGAAACGTACCA‑GTGATTCGTTTTTACGCATACCCCAGACAGTcg < 4:1058323/138‑2 (MQ=255)
tgtAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGCATACCCCAGACAGTcc < 2:720368/138‑1 (MQ=255)
tgtAGCCGTTACGCTCAAGAGCGTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGCATACCCCAGACAGTcc < 3:622489/138‑1 (MQ=255)
gCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTTCGAACGCATATAATAGGCGCAGAAAAAAATTACCCGTGCAGGTAAACTTCCA‑CTGAGTAGTTGTTAAGCATACACCAGACACTCAAGTa > 2:1355705/1‑138 (MQ=255)
cGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGc < 1:859419/138‑1 (MQ=255)
tACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGGTTTTGTTAGCAAC‑AAAATAATAGCCGCCACAAAAACTTACGCGTCCCCGGAACGTACCA‑GAGCATCGGTTTTTCGCATAACCCAAACACAACACAAGCTCTgg > 8:309690/1‑140 (MQ=255)
cGCTCAAGAGCTTCTGCCCCTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCTCCGCATCAAAATCTTCCGCTTCCCGGAAACGTACCA‑GTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCt < 6:1009304/140‑1 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTAACGCATACCCCAGACAGTCCAGTAGCTCTGGCt < 5:889489/140‑1 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGGTTTTACGCATACCCCAGACAGTCCAGTAGCTCTgg < 2:428148/138‑1 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTTCGCACGAAGATAATAGCCGCCTCAAAAACTTGCGCGTGCAGGGAACGGTCCC‑GGGGTTGGGTTTTTCGCATACCCCCCACAGTCCAGTAgagcggg > 4:844834/1‑132 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGGTTTTGTTCGAACGAAGATAATAGCCGCATCAAAATATTCCGCTTCCAGGGAACGGACCA‑GTGCGTGGTTTTTACGCAAACCCCAGACAGTACAGTATCTCTgg > 4:393721/1‑138 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGGCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACCTACCA‑GTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCt < 7:1140572/140‑1 (MQ=255)
ttCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAgg < 2:886618/138‑1 (MQ=255)
tCTGCCACATCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCTCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACg < 6:979655/140‑1 (MQ=255)
cACTTCCAGAGTCGC‑GTTTTTGTTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGt < 2:819962/138‑1 (MQ=255)
cACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGt < 3:210523/138‑1 (MQ=255)
cACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAg < 5:500367/140‑1 (MQ=255)
cACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAg < 8:568219/140‑1 (MQ=255)
ccAGAGTCGC‑GTTTTTGGTACGAACGCAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCa < 1:715611/138‑1 (MQ=255)
ccAGAGTCGC‑GGTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGGAGTCACg < 7:244692/140‑1 (MQ=255)
tctc‑gTTGTTGGTACGAAAGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTAAGAATACCCCAGCCAGTCCAGTATCTCTGGCTGATGTCAGGACGGGTAGTCACGCTgg < 2:1015962/135‑1 (MQ=255)
tCGC‑TTTTTTGGTACGAACGAAGATAATAGCCGCATCAAATTCTTCGTCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACTAATACCACTGACAGTCGAGTAGCTATGGCTGATGTCAGGACGGGTAGTCACGCTGTAc < 5:1249676/140‑1 (MQ=255)
tCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGCATCCCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGAc < 7:822194/140‑1 (MQ=255)
cgc‑gTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACt < 7:444671/140‑1 (MQ=255)
ggTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGa < 6:516581/139‑1 (MQ=255)
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GTCGCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCA‑GTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGA > NZ_CP022686/2048951‑2049226
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
