Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A30 F12 I0 R1
|
192 |
11691.1 |
8856334 |
98.4% |
8714632 |
135.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,049,089 |
T→G |
13.4% |
N256T (AAC→ACC) |
deaD ← |
ATP‑dependent RNA helicase DeaD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,049,089 | 0 | T | G | 13.4%
| 325.7
/ 20.6
| 168 | N256T (AAC→ACC) | deaD | ATP‑dependent RNA helicase DeaD |
| Reads supporting (aligned to +/- strand): ref base T (12/130); new base G (22/3); total (34/134) |
| Fisher's exact test for biased strand distribution p-value = 5.91e-16 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 171 total aligned reads displayed.
GTCGCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGA > NZ_CP022686/2048951‑2049226
|
cgCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑Gtttt > 7:495881/1‑140 (MQ=255)
tCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTgg < 1:84271/138‑1 (MQ=255)
gATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTacgaa < 5:466649/140‑1 (MQ=255)
tGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATTTCACCGTTCAGAGCGGGGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTacgaa < 4:158763/138‑1 (MQ=255)
tGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTacgaacg < 6:942261/140‑1 (MQ=255)
tGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGttggaa > 3:21488/1‑133 (MQ=255)
tCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTTagaacgaa > 8:105626/1‑140 (MQ=255)
tCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTAcgaacgaa > 7:543606/1‑140 (MQ=255)
cgacCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTGGT‑GGAACGCAGAtt > 2:462142/1‑137 (MQ=255)
ccATCTTTCAGGCGTTCCAGTGTCTGCTCACGCCGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATcgc < 7:635236/140‑1 (MQ=255)
ccATCTTTCAGGCGTTCCAGTGGCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGGTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATcgc < 8:575302/140‑1 (MQ=255)
cATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGATTCTGCCTCTTCCAGAGTCGC‑GGGTTTGGTTCGAACCGAGAAAATagcc > 6:610730/1‑140 (MQ=255)
agcTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATcgccg < 5:450846/138‑1 (MQ=255)
tCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGGGTTTGTTGGAACCAACATAATagcc > 1:754322/1‑138 (MQ=255)
ccAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTTCGAACGAAGATAATAGCCGCATATAAATCtt > 4:725774/1‑138 (MQ=255)
ccAGTGTCTGCTCACGCAGAGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTTTACGCAACAAGAAAATAACCCCAACaaaaaatt > 4:586517/1‑134 (MQ=255)
cAGTGTCTGCTCACGCAGCGCATGGTTCATGTCAACTTTCAGCGCGGCGCTGTTGTAGCCGGTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCTC‑GTTTTTGTTACGAAAGAAGATAATCGCCGCATCAAAATCTTc < 1:308453/138‑1 (MQ=255)
tCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGACGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTcc < 5:1084601/140‑1 (MQ=255)
cTGCTCCCGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTc < 2:301360/138‑1 (MQ=255)
cTGCTCACGCAGCGCCTGGTTCATGTCACCGTGCCGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTc < 4:1005240/138‑1 (MQ=255)
gCTCACGCAGCGCCTGGTTCATGTCACCTTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAgg < 7:577073/140‑1 (MQ=255)
gCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCa < 1:71043/138‑1 (MQ=255)
cTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTGAGGACGCAGATAATAGCCGCGTCAAAATAGTCCGGTTGCAg > 4:64401/1‑138 (MQ=255)
tCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTGAGCACGAATAATATCGCCGCATCAAAATATTACGCTTCCAgg > 3:635438/1‑138 (MQ=255)
cACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGaaa < 5:992398/140‑1 (MQ=255)
cGCAGCGCCTGGGTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACg < 5:558676/140‑1 (MQ=255)
cAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTTCGAACCAAGATAATCGCCGCCTCAAAATCTTAAGCATCCAGGAAACg > 4:845967/1‑138 (MQ=255)
cAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGGACGCACGAAGATAATCGCCGCCTCAAAATCTTCCGCTTCCAGGAAAcc > 2:1094246/1‑137 (MQ=255)
aGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGGTGTTGTATCCGTTACGCTCTAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCTCATCAAAATCTTCCGCTTCCAGGAAACGTAc < 7:300619/140‑1 (MQ=255)
aGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTAc < 7:654686/140‑1 (MQ=255)
cgcCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCa < 5:327557/140‑1 (MQ=255)
cgcCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTACGAACGAAGAGAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCa > 7:870552/1‑140 (MQ=255)
gcCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTGAGGACGAAGCTAATAGCCGCATCAAAATAGTCCGCTTGCAGGTAGCGGAcc > 4:474953/1‑138 (MQ=255)
cTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTGCGAAAGAAGATTATCGCCGCCTCAAAAACTTGCGCGTCCACGCAACGTCCCac > 1:624344/1‑137 (MQ=255)
ggTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTg < 3:275008/138‑1 (MQ=255)
gTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCtt < 6:752045/140‑1 (MQ=255)
tCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCg < 8:638155/140‑1 (MQ=255)
aTGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTACGCACCAAGATAATAGCCGCCACAAAATCTTCCGCTTACAGGAAACGTAACAGTGCttaggt > 6:605019/1‑136 (MQ=255)
gTCACCGTTCAGCGCGGCGCTGTTTTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGtt < 2:791402/138‑1 (MQ=255)
gTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTTTTAGAACGAAAATAATAGCCCCAAAAAAAAAATACGCTTGACGGAAACGTACCACTGCGTAGtt > 4:2920/1‑138 (MQ=255)
tCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGttttt < 5:708110/140‑1 (MQ=255)
tCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGttttt < 5:132474/140‑1 (MQ=255)
ctttCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑Ac < 2:659361/136‑1 (MQ=255)
cggtctgcgcGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTGCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑Ac < 2:616762/132‑1 (MQ=255)
cggtCAGCGCGGAGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTGCATAGTCGC‑GATTTTGGTCCGAACGAAGATAATCGCCGCAGCAAAATCATCCGCTACCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGc < 8:126071/137‑1 (MQ=255)
cGTTCAGCGCGGGGCTGTTGTAGCAGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGc < 8:627529/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTATACGTTACGCGCAAGAGCTTCTGCCAATTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCTCATCAAAATATTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑Ac < 2:1031290/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑Ac < 1:1094246/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑Ac < 4:996740/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑Ac < 3:382437/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑Ac < 1:614143/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑Ac < 1:473281/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑Ac < 2:1691/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑Ac < 4:751564/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGc < 7:923768/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGc < 8:233249/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGc < 5:66100/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGc < 6:740371/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGc < 6:30800/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGc < 6:128371/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGc < 6:286025/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGGACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑Ac < 2:469576/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTAGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑Ac < 3:643750/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGATTCTGCCACTTCCAGAGTAGC‑GTTTTTTGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGc < 8:92094/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTAAGCTCAAGAGCTTCTGCCACTTGCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAAACGCCGCATCAAAATCTTCCGCTTGCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGc < 8:278443/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCCTTACGCTCCAGAGCTTCTGCCACTTCCAGAGTCGA‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑Ac < 2:947531/138‑1 (MQ=255)
cGTTCAGCGCGGAGCTGTTGTAGCAGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑Ac < 1:1039175/138‑1 (MQ=255)
cGTTCAGCGAGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTGCTGCCACTTCCAGAGTCGC‑GTTGTTTGTACGATCTAAGATAATCGCCGCATCAAAATCTTGCGCTTCCAGGAAACGTACCAGTGCGTCGTTTTT‑Ac < 3:270840/138‑1 (MQ=255)
gTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCTCTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGCa < 5:813122/140‑1 (MQ=255)
aGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGCATa < 4:224809/138‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGCATACCCCa < 4:44749/138‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGCATACCCCAGa < 6:177314/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGCATACCCCAGa < 7:412429/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTAAGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGCATACCCCa < 2:240290/138‑1 (MQ=255)
ggcgCTGGTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAAAGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGCATACCCCAGa < 6:961640/140‑1 (MQ=255)
cgcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTGTCCGGAAGAATGTAATAGCCGCATAAAAAAATTACGCTTACAGGAAACGTTCCAGTGGTTCGTTTTTAACGC‑TAACCCAGAcc > 8:78514/1‑139 (MQ=255)
cgcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTTCGAACGAAGATAAAAGCCGCCTCAAAATATTCCGCGTACAGGAAACGTACCAGTGGTTCGTTTTT‑TAGCAAACCCCacccc > 8:548308/1‑136 (MQ=255)
cgcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTACGAAAGAAGATAATAGCCGCATCAAAAAATTACGCTTGCAGGAAACGGTCCAGTGCTTACGTTTT‑AAGCAAACCACAGACa > 8:266372/1‑140 (MQ=255)
gcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCAACTTCCAGAGTCGC‑GTTTTTGGTACGAACTAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGACACGTACCAGTGCTTCGTTTTT‑ACGCATACCCCAGAc < 2:770059/138‑1 (MQ=255)
gcTGTGGTAGCCTGTTCGCTCAATAGCTTCTGCCACCTCCAGAGTCGC‑GTTTTTGGTACGAACGAATATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTAGCAGTGCTTCGTTTTT‑ACGCATACCCCAGACAg < 5:254723/140‑1 (MQ=255)
tgtAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGCATACCCCAGACAGTCCAg < 8:543606/140‑1 (MQ=255)
tgtAGACGTGACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGCATACCCCAGACAGTcc < 4:10784/138‑1 (MQ=255)
gCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGCATACCCCAGACAGTCCAGTa < 2:36974/138‑1 (MQ=255)
cGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGCATACCCCAGACAGTCCAGTAGc < 1:786003/138‑1 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCTCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGCATACCCCATACAGTCCAGTAGATCTGGCt < 7:511455/140‑1 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTACGCACGAAGATAATCGCCGCCTCAAAATAATGCGCGTGCAGGTAACGTACCCGTGGTTCGGTTTT‑AAGGCTACCCCAGACCGGGCAGTAgaggggg > 4:407328/1‑132 (MQ=255)
cgagCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTc < 7:140946/139‑1 (MQ=255)
agagCTTCTGCCCCGGCCAGTGTCGC‑GTTTTTGGTACGAACGAAGATAAGCGCCGCATCAAAATCTTCCGCTTCCAGGTAACGTACCAGTGATTCGTTTTT‑ACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATg < 4:96497/138‑1 (MQ=255)
agagCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATg < 1:972231/138‑1 (MQ=255)
gagCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGt < 1:133044/138‑1 (MQ=255)
tCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGa < 2:123545/138‑1 (MQ=255)
cACTTCCAGAGTCGC‑GTTTTTGGTTCGAACGAATAAAATAGCCGCATCAAAATCTTCCGCTGACAGGAAACGTACCAGTGGTTAGTTTTT‑TCGCATACCCCAGCAAGTACAGAAGAGCAGGCGGATTTCAGGACCGGt > 4:966809/1‑138 (MQ=255)
cACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGt < 3:938251/138‑1 (MQ=255)
aaCTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCAGCATCAAAATCTTCCGCTTCCAGGAAACGTAACAGTGCTTCGTTTTT‑ACGCATACACCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAg < 7:252838/139‑1 (MQ=255)
aaCTTCCAGAGTCGC‑GTCTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGt < 4:1115875/137‑1 (MQ=255)
ccAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACg < 8:1053228/140‑1 (MQ=255)
tCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCATCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTgg < 1:316164/138‑1 (MQ=255)
gcgc‑gTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGAc < 6:591357/139‑1 (MQ=255)
c‑gTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGa < 8:495881/140‑1 (MQ=255)
c‑gTTTTTGGTAAGAACGAAGATAATCGCCGCATCAAAATATTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGCATACCCCAGACAGTCCAGTAGCTCTGGGTGATGTCATGACGGGTAGTCACGCTGGACTGa > 6:135967/1‑140 (MQ=255)
|
GTCGCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTT‑ACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGA > NZ_CP022686/2048951‑2049226
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
