Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A30 F2 I0 R1
|
181 |
7914.3 |
8336376 |
98.4% |
8202993 |
136.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,049,089 |
T→G |
19.3% |
N256T (AAC→ACC) |
deaD ← |
ATP‑dependent RNA helicase DeaD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,049,089 | 0 | T | G | 19.3%
| 249.8
/ 23.4
| 149 | N256T (AAC→ACC) | deaD | ATP‑dependent RNA helicase DeaD |
| Reads supporting (aligned to +/- strand): ref base T (8/109); new base G (26/6); total (34/115) |
| Fisher's exact test for biased strand distribution p-value = 1.42e-16 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 151 total aligned reads displayed.
TCGCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGAC > NZ_CP022686/2048952‑2049223
|
tcgCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑Gt‑tt < 1:709370/140‑1 (MQ=255)
cgCAATCAGGATGTCCAGACGACCCTATTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGGCACCGTTCAGCCCGGCGCTGGTGTAGCCGTAACCCTACCGAGCATCTCCCAATGACAGAGTCGC‑Gt‑tgt > 6:5140/1‑138 (MQ=255)
aTCAGGAGGTCCAGACGACCATCTTTCAGGCGTTCCAGGGTCTGCTCACGCAGCGCCTGGTTCATGGCACAGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGt < 5:401980/140‑1 (MQ=255)
taaGGATGTCCAGACTACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTTATGTCACCGTTCAGCGCGGCGCTGTTGTTGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑TT‑TTTTGGTa < 4:305404/138‑1 (MQ=255)
tCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTa < 3:604418/140‑1 (MQ=255)
tCAGGATGGCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTa < 1:1033155/140‑1 (MQ=255)
caTGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTacgaa < 2:1012447/139‑1 (MQ=255)
tGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTacgaacg < 8:634548/140‑1 (MQ=255)
tGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGGTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTacgaacg < 8:855151/140‑1 (MQ=255)
tCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTAcgaacgaa > 8:671353/1‑140 (MQ=255)
ccATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGGTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATcgc < 3:5163/140‑1 (MQ=255)
cATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑TTTTTGTTCGAAAGAATATAATctcc > 1:428054/1‑140 (MQ=255)
ttCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGT‑TTTTGGT‑CGAACGCAGATAATAGCCGCATCAAAAtaat > 5:754791/1‑137 (MQ=255)
ttCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑TTTTTGTTCGAACGGAGAATAAAGACGACTCAAAATCtt > 8:710157/1‑140 (MQ=255)
ttCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑GTTTTGTTGGGACGAGAATAATAGCCCCCTCAAAAtaat > 7:707478/1‑137 (MQ=255)
ttCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑GTTTGTGTCGGACGAAGATAATAGCCGCAAAAAAATAtt > 3:217762/1‑140 (MQ=255)
ttCCAGGGTCTGCCCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGCGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCtt < 2:996368/140‑1 (MQ=255)
tCCAGTGTCTGCTCACGCAGCGCGTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGA‑GG‑TTTTTGTAAGAACGGAAATAATAAACGCATCAAAATAtta > 8:247216/1‑139 (MQ=255)
tCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑TTTTTGTACGAACGCAGATAATAGCCGCAAAAAAATAtta > 2:71556/1‑139 (MQ=255)
cgtggCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGc < 5:609379/139‑1 (MQ=255)
cTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCCGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCa < 2:803308/140‑1 (MQ=255)
cTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCa < 2:1027350/140‑1 (MQ=255)
tGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTTGTACGAAAGGAGATAATAGCCCCATCAAAATAGTCAGCTTCCaa > 6:867341/1‑139 (MQ=255)
gCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAgg < 2:300142/140‑1 (MQ=255)
gCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAgg < 5:784870/140‑1 (MQ=255)
cACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCTCATCAAAATCTTCCGCTTCCAGGaaa < 5:423842/140‑1 (MQ=255)
cACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGaaa < 7:698306/140‑1 (MQ=255)
cACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGaaa < 7:25658/140‑1 (MQ=255)
cAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑TTTTGGTTGGAAAGGAGATAATCGCCGCCTCAAAATCTTACGCGTACAGGAAACGTa > 4:879593/1‑140 (MQ=255)
aGCGCCTGGTTGATGTCACCGTTCTGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGATCGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTAc < 3:851214/140‑1 (MQ=255)
aGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTAc < 1:527137/140‑1 (MQ=255)
ggTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCt < 2:352213/140‑1 (MQ=255)
ggTTCAAGTCACAGTTCAGCGCGGCGCTGTTTTAGCCGTTACGCGCAAGAGCTGCTGCCACTTCCAGAGTCGC‑GG‑TGTTGGTACGAACGAAGATAATCGCCGCATCAAAAGCTTCCGCTTCCAGGAAACGTACCAGTGCt < 6:411183/140‑1 (MQ=255)
gTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTTCGAACGCAGATAATAGCCGCATGAAAATATTCCGCTTCCACGAAACGGACCAGGGCtt > 4:230777/1‑140 (MQ=255)
gTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCtt < 3:486262/140‑1 (MQ=255)
gTTCATGGCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCtt < 2:688405/140‑1 (MQ=255)
cgctCAGCGCGGCGCTGTTGTAGCCGTTCCGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑TTTTGGTACGAACGAAGATAATCGCCGCAGCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 5:237841/137‑1 (MQ=255)
cgatctgcgcGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 6:720890/134‑1 (MQ=255)
cGTTCCGCTAGGCGCTGTTGGAGACTTTACGCTCAATAGCTTCTGCCACTTCCAGAGTCGA‑GT‑TTTTGGTACGCACGAAGATAATCGCAGAATCAAACTCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 5:591829/140‑1 (MQ=255)
cGTTCAGCGCTGCGCTGTTGTAGCCGTTACGAGCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 7:623419/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGTACGAAGATAATCGCCGCATAAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 7:611183/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGCACGAAGATAATCGCCGCAGCAAAATAATCCGCGTACCGGAACCCGAACAGTGCGAAGTTTTTACGc > 8:560764/1‑140 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 7:945987/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 8:875191/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 5:376700/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 6:510471/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 5:907450/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 4:968842/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 3:323843/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 1:147650/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 4:387363/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 1:590518/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 3:336579/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 3:421636/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 2:497990/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 1:81276/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 2:204231/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAAATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 2:988691/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑TTTTTGTTAGAACGAAGATAATCTCCGCCTAAAAAAGTTACGCGTCCAGGAAACGTTCCACTGCTTGGTTTTTaggg > 2:901641/1‑137 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑TTTTGGTTCGAACGAAAATTATCGCCGCATAAAAATATTACGCATGACGGAAACCAAACAATGCATGGTTTTTAAGc > 8:801208/1‑140 (MQ=255)
cGTTCACCGCGGCGCTGCTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 2:139781/140‑1 (MQ=255)
cGTGCAGCGCGGCGCTGGTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTACGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 8:280971/140‑1 (MQ=255)
gTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGGCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCa < 5:737464/140‑1 (MQ=255)
ttCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTGTTTTTGAAC‑TACGAAAATTATACCCGCAAAAAAATCTTCCGCATACATGTAACCTCCCAGAGCGTCGgtttttagcct > 6:247663/1‑134 (MQ=255)
cgcgGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑TTTTGGTTCGAAAAAAGATAATAGCCCCATAACAATCATCATCCTCCAGGAAAAGTAACAGTGATTCGTTTATACGCATAcacc > 6:257179/1‑140 (MQ=255)
cgcgGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑TTTTGGTTAGAACGAAGATAATCGCCGCCTCAAAATATTGCGCGTGCACGGAACGTACCAGTGGGTCGGTTGTTCGCATAcccc > 6:765457/1‑140 (MQ=255)
gcggcgCTGTTGTTGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCa < 1:831871/140‑1 (MQ=255)
cggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑TTTTTGTTCGAACGAAGATAATCGCCGCCTCAAAATCTTGCGCGTCCAGGAAACGTGACAGGGCTTCGGTTTTAGGGCTAcccccc > 4:1002851/1‑138 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 6:580245/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 8:377784/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 1:1073088/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 3:443827/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 5:727192/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 4:229683/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 3:1059332/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCGTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 2:681127/140‑1 (MQ=255)
cgcTGTTGTCTCCGTTACGAGCAAGAGCTTCTGCCACTTCCTGAGTCGC‑TG‑TTTTGGTACGAACGAAGATATTCGCCGCATCATAATCTTCCGCTTCCATGAAACGTACCAGTGCTGAGCTTTTACGCATACCCCAGACa < 8:599539/140‑1 (MQ=255)
ttgtAGCCGTTACGCTCAAGAGCTTCTGCCACGTCCAGAGTCGC‑GG‑TTTTGGTTCGAAATAAGATAATAGCCGCCTAAAAATCTTCGGCTTACCGGCAACGTTCCAGTGGGTCGGTTTTTCTCATACCCCAGACAATCCa > 4:764170/1‑140 (MQ=255)
tgtAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAg < 1:188988/140‑1 (MQ=255)
tgtAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAg < 5:111677/140‑1 (MQ=255)
ggtAGCCGTTACGCGCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAg < 7:485821/139‑1 (MQ=255)
ccGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGct < 7:145276/140‑1 (MQ=255)
ccGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTGTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGct < 8:739657/140‑1 (MQ=255)
ccGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGct < 5:576009/140‑1 (MQ=255)
tACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑TTTTTGTTGGAACGAAGATAATAGCCGGCTCAAAAACTTACGCGTCCAGGGAAAGGAACAGTGGGTAGGTTTTAGGCATAACCCAGACAGTCCAGTAGCTGTgg > 2:609406/1‑140 (MQ=255)
tACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑TTTTTGTTCGAACGAAGATAATAGCCGCATCAAAATCTTCCGCTTGCAGGAAACGTTCCACTGCGTCGTTTTTTCGCATAACCCAGACAGTCCAGTAGcggtgg > 4:330058/1‑135 (MQ=255)
tACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑GTTTTGTTCGAAAGAAGATAATAGCCGCATAAAAATATTCAGCCGACAGGAAACCGACCAGTGGTTGGGGTTTTGGCATAAACCAGACACTCAACTAGAGCTgg > 4:41/1‑140 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTACAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCt < 3:818545/140‑1 (MQ=255)
gCTCAAGAGCGTCTGCCCCTTCCAGAGTCGC‑GT‑TTTTGGTACGACCGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTg < 7:564902/140‑1 (MQ=255)
agagCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTTCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTc < 3:913140/140‑1 (MQ=255)
gCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAgg < 5:725445/140‑1 (MQ=255)
tCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGCAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACg < 8:69057/140‑1 (MQ=255)
tGCCACTTCCAGAGTCGC‑GT‑TTTTGGGACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACggg < 4:671951/140‑1 (MQ=255)
cACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAACATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAg < 5:684216/140‑1 (MQ=255)
cACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAg < 1:2541/140‑1 (MQ=255)
cACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAg < 1:147523/140‑1 (MQ=255)
ccAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACg < 3:671618/140‑1 (MQ=255)
cacgagTCGA‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCATGAAACGTAACAGTGCTTCGTTTTTACGCATACACCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACg < 7:247216/137‑1 (MQ=255)
tCGC‑GT‑TTTTGGTACGTACGAAGATAATCGCAGCATCAATATCTTCCGCTTCCAGGAATCGTACCAGTGCTTCGTTTTTAGGCATACCCCTGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTTGAc < 2:909245/140‑1 (MQ=255)
tCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGAc < 8:28041/140‑1 (MQ=255)
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TCGCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGAC > NZ_CP022686/2048952‑2049223
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
