Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A29 F2 I0 R1
|
207 |
10827.9 |
9263290 |
98.4% |
9115077 |
135.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,049,089 |
T→G |
18.6% |
N256T (AAC→ACC) |
deaD ← |
ATP‑dependent RNA helicase DeaD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,049,089 | 0 | T | G | 18.6%
| 307.9
/ 25.2
| 179 | N256T (AAC→ACC) | deaD | ATP‑dependent RNA helicase DeaD |
| Reads supporting (aligned to +/- strand): ref base T (7/134); new base G (34/3); total (41/138) |
| Fisher's exact test for biased strand distribution p-value = 3.97e-26 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 181 total aligned reads displayed.
GTCGCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGAC > NZ_CP022686/2048951‑2049223
|
cgCAATCAGGATGTCCAGACGCCCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGtt > 6:481017/1‑138 (MQ=255)
tGTCCTGACGACGATCTTTCAGGCGTTCCCGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACGGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTGACGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTacgaa < 5:853832/138‑1 (MQ=255)
tGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTacgaacg < 3:1008250/140‑1 (MQ=255)
tGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCGCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTacgaacg < 4:1003921/140‑1 (MQ=255)
tCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCCTGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTGGTtcgaaacca > 3:972538/1‑136 (MQ=255)
tCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTAcgaaagaa > 3:169935/1‑140 (MQ=255)
tCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTGTTcgaacgaa > 3:491119/1‑140 (MQ=255)
tCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACCATCAAGAGCTTCTGCCACTTCAAGAGTCGCGGTTTTGGTTcaaaagaa > 3:391505/1‑140 (MQ=255)
tCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCAGTTGTAGACGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTGTTTTGTTagaaagaa > 1:445837/1‑140 (MQ=255)
cAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTGTTagcacgaa > 6:625937/1‑138 (MQ=255)
cAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTGGTAagaaccaa > 6:336762/1‑138 (MQ=255)
tCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGGTCAGCTCGGCGCTGTTGTAGCCGTTACGCGCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTTGTTAGAACGAAGATAATagcc > 8:148020/1‑138 (MQ=255)
ttCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTGTTGGAACGAAGATAAAAGCCGCCACAAAATCtt > 1:51611/1‑140 (MQ=255)
tCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCt < 6:756537/138‑1 (MQ=255)
tgtCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTAAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTGTTCGAAAGAATATTATAGACACATCAAAATATTACggga > 4:467206/1‑137 (MQ=255)
gCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCa < 8:318272/138‑1 (MQ=255)
gCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCa < 5:69652/138‑1 (MQ=255)
cTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTGTTAGGACGAAGATTAAAGCCGCCACAAAATATTCCGcgtacaa > 6:1079463/1‑132 (MQ=255)
cACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGa‑aa < 1:812144/140‑1 (MQ=255)
cACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGa‑aa < 1:594804/140‑1 (MQ=255)
gcgcCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTGGGTCGAACGAAGATAATAGCCGCATAAAAAAATTCCGCTTACAGGA‑AACgga > 6:377397/1‑136 (MQ=255)
cgcCTGGTTCATGTCACCGTTCAGAGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTAc < 7:790119/138‑1 (MQ=255)
gcCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTGGTGAGAAACAAGATAAACGCCGCCTCAAAAACATCCACGTCCACGA‑AACGTACCaa > 2:941053/1‑139 (MQ=255)
cTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTTGTTCGAACGAAGATAATCGCCGCATCAAAATCTTAAGCGTCCAGGA‑AACGTTCCAg > 8:816457/1‑138 (MQ=255)
gTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTTCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGc < 5:443241/138‑1 (MQ=255)
aTGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTTGTAAGAACGAAGATAATAGCCGCATCAAAATCTTGCGCTTCCACGA‑AACCTAACACTGCGTC‑ggt > 4:709357/1‑138 (MQ=255)
aTGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTGGTTCGAACGAAGATAATCGCCGCATCAAAATCTTGCGCGTGCCAGA‑AACGGACCAGGGCGTC‑Gtt > 2:869560/1‑140 (MQ=255)
tGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCACATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑Gttt < 2:255906/140‑1 (MQ=255)
gttaCCGTTCTGCGCGGCGCTGTTGTAGCCGTTACGCTCAATAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑Gta < 8:1043961/135‑2 (MQ=255)
gTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTTTTAGAAAGAATATAATAACCGCATCAAAAAAATAAGCTTACAGGA‑AACGAACCAGTTGTTA‑Gtttt > 1:572075/1‑140 (MQ=255)
gTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTGTTTAGGACGCAGATAATCACCCCCACAAAAAAATACGCATACAAGC‑AAAGTACCACTGCGTA‑Gtttt > 3:391864/1‑140 (MQ=255)
gTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGGTTTTTTACGAACGAAGATAATAGCCGCCTGCTAATATTCCGCGTCACGGG‑AACCGACCAGTGGTAC‑Ggttt > 4:352823/1‑140 (MQ=255)
ggTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTAc < 5:172122/137‑1 (MQ=255)
cgtgctgcgcGGCGCTGTTGTAGCCGGTACGCTCAAGAGCTTCGGCCACTTCCAGAGTCGCGTTTTTGGGACGAACGAAGATAAGCGCCGCAGCACAATCTTCCGCTTCCAGGA‑CACGTACCAGTGCTTC‑GTTTTTAc < 6:675736/132‑1 (MQ=255)
cggtCAGCGCGGCGCTGTGGTAGCCGTTACGCTCATGAGCTGCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAATATTATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCGTC‑GTTTTTACGc < 4:511144/137‑1 (MQ=255)
cGTTCAGGGCGTCGCTGTGGTAGCCGTTACGATAAAGCGCTGCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGTAGATAATAGCCGCATCAAACTCTTCCGCTTCCAGGA‑AACGTACCAGTGCATC‑GTTTTTACGc < 2:448370/140‑1 (MQ=255)
cGTTCAGCTCGGCGCTGTTGTAGCCGTTACGCTCAAGATCTTCTGCCACTACCAGAGTCGCGGTTTTTGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGc < 1:518330/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTTTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGc < 4:888862/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCTGTTACGCTCAAGAGCTTCTGCCTCTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTAc < 8:458221/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCTTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTAc < 5:79181/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTTCGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGc < 1:274450/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCCAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTAc < 6:266090/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCATGAGCTTCTGCCACTTCCAGAGTCGCGTTGTTGGTACGAACGAAGATAATCTCCGCATCTAAATCTTCCTCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTAc < 7:740089/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGACCGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGc < 2:540635/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTAc < 8:580790/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTAc < 6:889668/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTAc < 8:656500/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTAc < 7:448545/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTAc < 7:1006138/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGc < 1:1200073/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTGTTAGAACGAAGATAATAGCCGCAACAAAATAATACGCGTCCACGA‑AACGTACCAATGCTTA‑Gttttttagc > 4:1001086/1‑136 (MQ=255)
cGTTCAGCGCGGCGCTGGTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTAc < 5:358468/138‑1 (MQ=255)
cGTTCAGCGCGGAGCTGTTGTAGCCGTTATGCGCAAGAGCTTCTGACAAATCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGAATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGc < 3:1051796/140‑1 (MQ=255)
agTTCAGCGCGTCGCTGTTGTAGACGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGAGTTTTTGGTACGAACGAAGATAATAGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGc < 2:840599/139‑1 (MQ=255)
gTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTGGGTCGACCGCAGATAATAGCCGCCTCAAAATATTACGCATACAGGACAACG‑ACCAATGCGTC‑Ggtttttcc > 6:971287/1‑135 (MQ=255)
tCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGTTAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCa < 5:219194/138‑1 (MQ=255)
cAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTGTTCGGACGCAGGTTATAGCCGCCTGAAAAAATTACGCGTACCGGC‑AACGTAACACTGCTTG‑GTGTTTAAGccaac > 3:1160051/1‑136 (MQ=255)
aGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATAcc < 2:358438/140‑1 (MQ=255)
gcggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCa < 3:1146619/140‑1 (MQ=255)
ggcgCTTTTGTAGCCGTTACGCTCAAGAGCTTCTGACACTTCCAGAGTCGCGTTTTTGGTACGAACGCAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGa < 4:209100/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCACGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGa < 2:36129/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTTCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGa < 3:822691/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCa < 8:1012731/138‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCa < 8:731844/138‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGa < 3:786309/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGa < 1:89518/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGa < 3:637770/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGa < 2:1038385/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGAGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCa < 6:859396/138‑1 (MQ=255)
gcgcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGAc < 1:474199/140‑1 (MQ=255)
cgcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTGGTTCGAACGAAGATAATCGCCGCATAAAAATCTTCCGCTTACAGGA‑AACGTACCAGGGCGTG‑GTTTTTACGCATACCCCCGACa > 4:911909/1‑140 (MQ=255)
gcggttgtAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGAc < 8:353991/135‑1 (MQ=255)
gcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGAc < 7:225350/138‑1 (MQ=255)
gcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAg < 3:911909/140‑1 (MQ=255)
gcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAg < 1:790267/140‑1 (MQ=255)
gcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAg < 3:547402/140‑1 (MQ=255)
ttgtAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTc < 6:914499/138‑1 (MQ=255)
ttgtAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTGGTAAGAACCAAGATAAACGCCGCAAGAAAATATAAAGCAGCCAGGA‑ACCCTACCAGTTGTTG‑GGTTTTTCGCAATCCCCCGACactaac > 4:619962/1‑135 (MQ=255)
tgtAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTcc < 8:230695/138‑1 (MQ=255)
tgtAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAg < 1:869560/140‑1 (MQ=255)
tgtAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAg < 2:974811/140‑1 (MQ=255)
cGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTGGGTCGCACGGAGAAAAACGCCGCAACAAAATATTCCGCGTACAGGA‑AACAGTCCCGTGGGTG‑GGTTTTACGCCTACCCCAGACAGTCCACTAGc > 6:683165/1‑138 (MQ=255)
tACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGctct < 7:1082539/138‑1 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTGTTCGAACGAAGATAATAGCCGCCTAAAAATAATCCGCGACCCGGA‑AACGTACCAGTGCGTA‑GTTTTTTAGCATACCCCACACACTGCAGTAGCGCTGGcg > 4:1091839/1‑139 (MQ=255)
gagCTTCTGCCACTTCCAGAGTCGCGGTTTTTGTTGGAACGAAGATAATAGCCGCATCAAAATATTGCGCTTCCAGGA‑AACGTACCAGTGGGTCGGTTTTTAGGC‑TTCCCCCGACAAGCCAGTAGAGCTGGCTGAGGt > 6:124417/1‑138 (MQ=255)
agCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTc < 7:281223/138‑1 (MQ=255)
agCTTCTGCCACTTCCAGAGGCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTc < 5:47700/138‑1 (MQ=255)
gCTTCTGCCACTTCCAGAGTCGCGGTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAgg < 3:317622/140‑1 (MQ=255)
cTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTACAGGA‑AACGTACCAGTGCTTC‑GGTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGa < 3:451313/140‑1 (MQ=255)
tCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACg < 1:1146438/140‑1 (MQ=255)
cTGCCACTTCCAGAGTCGCGGTTTTTGTACGAACGCAGATAATAGCCGCATAAAAATATTACGCGTCCAGGA‑AACGTAACACTGCGTA‑GTTTTTACGCAAACCCCAGCCAGTCCACTATGGCAGGCTGTTGTGAGGAccg > 2:955362/1‑138 (MQ=255)
tGCCACTTCCAGAGTCGCGGTTTTTGTTAGAACGAAGATAATAGCCGCAACAAAATATTACGCATCCAGGA‑AACGGAACACTGGGTA‑GGTTTTTAGCATAACCCCGACCCTCCAGGAGCTCGGGGGGATGTGAggcac > 6:1119428/1‑135 (MQ=255)
cACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGt < 5:1073915/138‑1 (MQ=255)
cACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGt < 6:585187/138‑1 (MQ=255)
cAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGc < 3:582271/140‑1 (MQ=255)
aagagTCGCGTTTTTGGTACGAACGAAGATACTCGCCGCAGCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGGGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCAc < 7:534401/137‑1 (MQ=255)
gTCGCGTGTTTGGGACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTGCCAGGA‑AACTGCCCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTg < 8:872975/138‑1 (MQ=255)
tCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTgg < 5:1079463/138‑1 (MQ=255)
tCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGAc < 3:108387/140‑1 (MQ=255)
cgcgTTTTTGGTACGAACGAAGATAAGCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGa < 5:933178/138‑1 (MQ=255)
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GTCGCAATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGA‑AACGTACCAGTGCTTC‑GTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGAC > NZ_CP022686/2048951‑2049223
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
