mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 54 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,228,326 | 0 | T | C | 71.0% | 35.1 / 24.0 | 31 | V255V (GTT→GTC) | yjbH | YjbH domain‑containing protein |
| * | NZ_CP009273 | 936,215 | 1 | . | T | 70.8% | 69.4 / 20.2 | 24 | intergenic (+39/‑200) | serS/dmsA | serine‑‑tRNA ligase/dimethylsulfoxide reductase subunit A |
| * | NZ_CP009273 | 641,227 | 0 | T | C | 70.5% | 53.4 / 38.0 | 44 | A270A (GCA→GCG) | citT | citrate/succinate antiporter CitT |
| * | NZ_CP009273 | 982,950 | 0 | T | G | 64.3% | 4.2 / 13.4 | 14 | intergenic (‑512/+91) | ompF/asnS | porin OmpF/asparagine‑‑tRNA ligase |
| * | NZ_CP009273 | 71,566 | 0 | C | T | 64.0% | ‑6.2 / 21.4 | 25 | L134L (CTG→CTA) | thiB | thiamine ABC transporter substrate binding subunit |
| * | NZ_CP009273 | 351,822 | 0 | T | C | 63.9% | 74.9 / 94.5 | 83 | I397T (ATC→ACC) | codB | cytosine permease |
| * | NZ_CP009273 | 3,872,951 | 0 | T | C | 61.9% | 21.0 / 50.0 | 42 | T177A (ACC→GCC) | gyrB | DNA topoisomerase (ATP‑hydrolyzing) subunit B |
| * | NZ_CP009273 | 3,822,250 | 0 | C | T | 61.0% | 37.5 / 44.4 | 41 | intergenic (‑225/‑55) | gltS/xanP | sodium/glutamate symporter/xanthine/proton symporter XanP |
| * | NZ_CP009273 | 966,025 | 0 | A | G | 60.0% | 6.6 / 38.6 | 30 | Q394R (CAA→CGA) | ycaQ | winged helix DNA‑binding protein YcaQ |
| * | NZ_CP009273 | 322,719 | 0 | T | C | 58.6% | 19.4 / 97.8 | 70 | G80G (GGA→GGG) | betA | choline dehydrogenase |
| * | NZ_CP009273 | 71,561 | 0 | T | G | 58.3% | 9.6 / 26.1 | 24 | N136T (AAC→ACC) | thiB | thiamine ABC transporter substrate binding subunit |
| * | NZ_CP009273 | 1,363,786 | 0 | G | C | 58.3% | 3.6 / 14.7 | 12 | R46P (CGA→CCA) | pspD | phage shock protein PspD |
| * | NZ_CP009273 | 1,429,984 | 0 | G | A | 58.3% | 0.0 / 11.8 | 12 | intergenic (‑108/+33) | uspF/ompN | universal stress protein UspF/porin OmpN |
| * | NZ_CP009273 | 1,778,774 | 0 | C | T | 57.9% | 11.6 / 19.1 | 19 | A496V (GCT→GTT) | fadK | medium‑chain fatty‑acid‑‑CoA ligase |
| * | NZ_CP009273 | 3,634,341 | 0 | C | T | 56.7% | ‑2.6 / 27.2 | 30 | F40F (TTC→TTT) | dtpB | dipeptide/tripeptide permease DtpB |
| * | NZ_CP009273 | 2,333,275 | 0 | A | G | 56.2% | 7.4 / 16.6 | 16 | E77G (GAA→GGA) | ubiG | bifunctional 3‑demethylubiquinone 3‑O‑methyltransferase/2‑octaprenyl‑6‑hydroxy phenol methylase |
| * | NZ_CP009273 | 341,944 | 0 | T | C | 56.1% | 2.7 / 83.6 | 57 | G35G (GGA→GGG) | yahN | LysE family transporter |
| * | NZ_CP009273 | 71,575 | 0 | C | T | 56.0% | 3.1 / 26.2 | 25 | K131K (AAG→AAA) | thiB | thiamine ABC transporter substrate binding subunit |
| * | NZ_CP009273 | 4,527,926 | 0 | A | C | 55.0% | 17.9 / 30.2 | 20 | G219G (GGT→GGG) | nanM | N‑acetylneuraminate epimerase |
| * | NZ_CP009273 | 1,074,924 | 0 | A | G | 54.5% | 6.2 / 12.8 | 11 | D55G (GAT→GGT) | putP | sodium/proline symporter PutP |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 355964 = | 64 (2.140) | 3 (0.110) | 3/224 | 2.8 | 5.3% | coding (262/1155 nt) | cynX | cyanate transporter CynX |
| ? | NZ_CP009273 | 355990 = | 49 (1.800) | coding (288/1155 nt) | cynX | cyanate transporter CynX | |||||
| * | ? | NZ_CP009273 | = 303074 | 49 (1.640) | 3 (0.110) | 3/230 | 2.9 | 6.0% | coding (1970/2526 nt) | ecpC | fimbrial usher EcpC |
| ? | NZ_CP009273 | = 303087 | 49 (1.750) | coding (1957/2526 nt) | ecpC | fimbrial usher EcpC | |||||