breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | |||||
---|---|---|---|---|---|
evidence | position | mutation | annotation | gene | description |
RA | 49,765 | C→T | intergenic (+134/‑58) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
RA | 49,912 | G→T | W30C (TGG→TGT) | folA → | type 3 dihydrofolate reductase |
MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NZ_CP009273 | 158253 | 158268 | 16 | 2 [1] | [1] 2 | thpR | RNA 2',3'‑cyclic phosphodiesterase |
* | * | ÷ | NZ_CP009273 | 248580 | 248591 | 12 | 2 [1] | [0] 2 | yafN | type I toxin‑antitoxin system antitoxin YafN |
* | * | ÷ | NZ_CP009273 | 355815 | 355845 | 31 | 2 [1] | [1] 2 | cynX | cyanate transporter CynX |
* | * | ÷ | NZ_CP009273 | 356957 | 357576 | 620 | 2 [1] | [1] 2 | lacA | lacA |
* | * | ÷ | NZ_CP009273 | 430511 | 430526 | 16 | 3 [1] | [1] 3 | ribE | 6,7‑dimethyl‑8‑ribityllumazine synthase |
* | * | ÷ | NZ_CP009273 | 514343 | 514358 | 16 | 3 [1] | [0] 2 | ybbO | NADP(+)‑dependent aldehyde reductase |
* | * | ÷ | NZ_CP009273 | 514401 | 514447 | 47 | 2 [0] | [1] 2 | ybbO | NADP(+)‑dependent aldehyde reductase |
* | * | ÷ | NZ_CP009273 | 580718 | 580736 | 19 | 2 [1] | [1] 2 | ompT | omptin family outer membrane protease OmpT |
* | * | ÷ | NZ_CP009273 | 591051 | 591089 | 39 | 2 [1] | [1] 3 | [cusC] | [cusC] |
* | * | ÷ | NZ_CP009273 | 618571 | 618579 | 9 | 2 [1] | [1] 3 | entS | enterobactin transporter EntS |
* | * | ÷ | NZ_CP009273 | 619564 | 619583 | 20 | 3 [1] | [1] 2 | fepB | Fe2+‑enterobactin ABC transporter substrate‑binding protein |
* | * | ÷ | NZ_CP009273 | 644453 | 644502 | 50 | 3 [0] | [1] 2 | citF | citrate lyase subunit alpha |
* | * | ÷ | NZ_CP009273 | 664599 | 664619 | 21 | 2 [1] | [1] 3 | rsfS/cobC | ribosome silencing factor/adenosylcobalamin/alpha‑ribazole phosphatase |
* | * | ÷ | NZ_CP009273 | 686248 | 686261 | 14 | 2 [1] | [0] 2 | lnt | apolipoprotein N‑acyltransferase |
* | * | ÷ | NZ_CP009273 | 696287 | 696309 | 23 | 3 [1] | [1] 2 | nagC | DNA‑binding transcriptional regulator NagC |
* | * | ÷ | NZ_CP009273 | 700297 | 700335 | 39 | 3 [1] | [1] 2 | nagE | PTS N‑acetyl glucosamine transporter subunit IIABC |
* | * | ÷ | NZ_CP009273 | 703467 | 703536 | 70 | 2 [1] | [0] 2 | glnS/chiP | glutamine‑‑tRNA ligase/chitoporin |
* | * | ÷ | NZ_CP009273 | 715587 | 715609 | 23 | 2 [0] | [1] 2 | speF | ornithine decarboxylase SpeF |
* | * | ÷ | NZ_CP009273 | 719006 | 719030 | 25 | 3 [1] | [1] 3 | kdpD | two‑component system sensor histidine kinase KdpD |
* | * | ÷ | NZ_CP009273 | 722941 | 722959 | 19 | 2 [1] | [1] 2 | kdpA | potassium‑transporting ATPase subunit KdpA |
* | * | ÷ | NZ_CP009273 | 737658 | 737681 | 24 | 2 [1] | [1] 2 | dtpD | dipeptide permease DtpD |
* | * | ÷ | NZ_CP009273 | 741796 | 741822 | 27 | 2 [1] | [1] 2 | nei | endonuclease VIII |
* | * | ÷ | NZ_CP009273 | 745900 | 745912 | 13 | 3 [1] | [1] 2 | ybgQ | fimbrial biogenesis outer membrane usher protein |
* | * | ÷ | NZ_CP009273 | 746636 | 746661 | 26 | 2 [1] | [0] 3 | ybgQ | fimbrial biogenesis outer membrane usher protein |
* | * | ÷ | NZ_CP009273 | 762592 | 762670 | 79 | 2 [1] | [1] 2 | mngA | PTS 2‑O‑a‑mannosyl‑D‑glycerate transporter subunit IIABC |
* | * | ÷ | NZ_CP009273 | 778759 | 778781 | 23 | 2 [1] | [0] 2 | pnuC | nicotinamide riboside transporter PnuC |
* | * | ÷ | NZ_CP009273 | 790364 | 790397 | 34 | 2 [1] | [1] 2 | [acrZ] | [acrZ] |
* | * | ÷ | NZ_CP009273 | 792069 | 792086 | 18 | 2 [1] | [1] 2 | modC | molybdenum ABC transporter ATP‑binding protein ModC |
* | * | ÷ | NZ_CP009273 | 798985 | 799071 | 87 | 2 [1] | [0] 2 | ybhJ | hydratase |
* | * | ÷ | NZ_CP009273 | 814519 | 814556 | 38 | 2 [1] | [1] 2 | moaD | molybdopterin synthase sulfur carrier subunit |
* | * | ÷ | NZ_CP009273 | 823586 | 823628 | 43 | 2 [1] | [1] 2 | ybhF | ATP‑binding cassette domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 827678 | 827691 | 14 | 2 [1] | [1] 2 | rhlE | ATP‑dependent RNA helicase RhlE |
* | * | ÷ | NZ_CP009273 | 830974 | 831059 | 86 | 3 [1] | [1] 2 | ybiB | DNA‑binding protein YbiB |
* | * | ÷ | NZ_CP009273 | 845176 | 845221 | 46 | 2 [1] | [1] 2 | rhtA | threonine/homoserine exporter RhtA |
* | * | ÷ | NZ_CP009273 | 852350 | 852360 | 11 | 3 [0] | [1] 2 | ybiT | ABC‑F family ATPase |
* | * | ÷ | NZ_CP009273 | 863295 | 863347 | 53 | 2 [1] | [1] 2 | gsiA | glutathione ABC transporter ATP‑binding protein GsiA |
* | * | ÷ | NZ_CP009273 | 864320 | 864352 | 33 | 3 [1] | [0] 2 | gsiA | glutathione ABC transporter ATP‑binding protein GsiA |
* | * | ÷ | NZ_CP009273 | 889471 | 889521 | 51 | 3 [0] | [1] 2 | potF | spermidine/putrescine ABC transporter substrate‑binding protein PotF |
* | * | ÷ | NZ_CP009273 | 893411 | 893502 | 92 | 6 [1] | [1] 2 | [ybjO] | [ybjO] |
* | * | ÷ | NZ_CP009273 | 897283 | 897356 | 74 | 2 [1] | [1] 2 | artQ | arginine ABC transporter permease ArtQ |
* | * | ÷ | NZ_CP009273 | 903033 | 903103 | 71 | 2 [1] | [1] 2 | ybjT | SDR family oxidoreductase |
* | * | ÷ | NZ_CP009273 | 903932 | 904038 | 107 | 2 [1] | [1] 3 | ltaE | low‑specificity L‑threonine aldolase |
* | * | ÷ | NZ_CP009273 | 905417 | 905497 | 81 | 2 [1] | [1] 2 | poxB | ubiquinone‑dependent pyruvate dehydrogenase |
* | * | ÷ | NZ_CP009273 | 915104 | 915162 | 59 | 2 [1] | [1] 2 | macA | macrolide transporter subunit MacA |
* | * | ÷ | NZ_CP009273 | 931345 | 931373 | 29 | 2 [1] | [1] 2 | ftsK | DNA translocase FtsK |
* | * | ÷ | NZ_CP009273 | 940610 | 940676 | 67 | 2 [1] | [1] 2 | ycaC | hydrolase |
* | * | ÷ | NZ_CP009273 | 940773 | 940827 | 55 | 2 [1] | [1] 2 | ycaC | hydrolase |
* | * | ÷ | NZ_CP009273 | 941766 | 941860 | 95 | 2 [1] | [1] 2 | ycaD | MFS transporter |
* | * | ÷ | NZ_CP009273 | 950037 | 950087 | 51 | 2 [1] | [1] 2 | focA/ycaO | formate transporter FocA/30S ribosomal protein S12 methylthiotransferase accessory factor YcaO |
* | * | ÷ | NZ_CP009273 | 954643 | 954745 | 103 | 2 [1] | [1] 2 | aroA | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
* | * | ÷ | NZ_CP009273 | 967504 | 967568 | 65 | 2 [1] | [1] 2 | ycbJ | YcbJ family phosphotransferase |
* | * | ÷ | NZ_CP009273 | 968176 | 968285 | 110 | 2 [1] | [1] 2 | elyC | envelope biogenesis factor ElyC |
* | * | ÷ | NZ_CP009273 | 970802 | 970819 | 18 | 2 [1] | [1] 3 | mukF | chromosome partition protein MukF |
* | * | ÷ | NZ_CP009273 | 978452 | 978510 | 59 | 2 [1] | [0] 2 | ldtD/mepK | L,D‑transpeptidase/YcbK family protein |
* | * | ÷ | NZ_CP009273 | 980851 | 980870 | 20 | 2 [1] | [1] 2 | aspC | aspartate transaminase |
* | * | ÷ | NZ_CP009273 | 989357 | 989393 | 37 | 2 [1] | [0] 2 | ssuB | aliphatic sulfonates ABC transporter ATP‑binding protein |
* | * | ÷ | NZ_CP009273 | 989839 | 989849 | 11 | 2 [0] | [1] 3 | ssuC | aliphatic sulfonate ABC transporter permease SsuC |
* | * | ÷ | NZ_CP009273 | 999404 | 999454 | 51 | 4 [0] | [0] 2 | ycbF | fimbrial chaperone |
* | * | ÷ | NZ_CP009273 | 1004214 | 1004224 | 11 | 8 [1] | [0] 2 | rlmKL | bifunctional 23S rRNA (guanine(2069)‑N(7))‑methyltransferase RlmK/23S rRNA (guanine(2445)‑N(2))‑methyltransferase RlmL |
* | * | ÷ | NZ_CP009273 | 1008503 | 1008512 | 10 | 2 [0] | [1] 2 | pqiA | membrane integrity‑associated transporter subunit PqiA |
* | * | ÷ | NZ_CP009273 | 1011145 | 1011170 | 26 | 2 [1] | [1] 2 | pqiC/rmf | membrane integrity‑associated transporter subunit PqiC/ribosome modulation factor |
* | * | ÷ | NZ_CP009273 | 1013328 | 1013418 | 91 | 2 [1] | [1] 2 | ycbZ | Lon protease family protein |
* | * | ÷ | NZ_CP009273 | 1028623 | 1028653 | 31 | 2 [0] | [1] 2 | hyaA | hydrogenase 1 small subunit |
* | * | ÷ | NZ_CP009273 | 1038760 | 1038775 | 16 | 2 [1] | [1] 2 | etk | tyrosine‑protein kinase |
* | * | ÷ | NZ_CP009273 | 1042699 | 1042744 | 46 | 3 [1] | [1] 2 | gfcD | YjbH domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1051194 | 1051259 | 66 | 2 [1] | [1] 3 | torS | TMAO reductase system sensor histidine kinase/response regulator TorS |
* | * | ÷ | NZ_CP009273 | 1052441 | 1052505 | 65 | 2 [1] | [1] 2 | torT | TMAO reductase system periplasmic protein TorT |
* | * | ÷ | NZ_CP009273 | 1058714 | 1058732 | 19 | 2 [1] | [1] 2 | cbpA | curved DNA‑binding protein |
* | * | ÷ | NZ_CP009273 | 1067003 | 1067067 | 65 | 3 [1] | [1] 2 | rutD | pyrimidine utilization protein D |
* | * | ÷ | NZ_CP009273 | 1068184 | 1068194 | 11 | 3 [0] | [1] 2 | rutB | peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB |
* | * | ÷ | NZ_CP009273 | 1069470 | 1069496 | 27 | 2 [1] | [1] 2 | rutA/rutR | pyrimidine utilization protein A/HTH‑type transcriptional regulator RutR |
* | * | ÷ | NZ_CP009273 | 1073244 | 1073334 | 91 | 2 [1] | [1] 3 | putA | trifunctional transcriptional regulator/proline dehydrogenase/L‑glutamate gamma‑semialdehyde dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1077462 | 1077479 | 18 | 2 [1] | [1] 2 | BW25113_RS05295 | FTR1 family protein |
* | * | ÷ | NZ_CP009273 | 1110649 | 1110691 | 43 | 3 [1] | [1] 2 | mdtG | multidrug efflux MFS transporter MdtG |
* | * | ÷ | NZ_CP009273 | 1118274 | 1118318 | 45 | 2 [1] | [0] 2 | yceB | lipoprotein |
* | * | ÷ | NZ_CP009273 | 1118372 | 1118464 | 93 | 3 [1] | [0] 2 | yceB | lipoprotein |
* | * | ÷ | NZ_CP009273 | 1122271 | 1122294 | 24 | 2 [1] | [1] 2 | yceM | Gfo/Idh/MocA family oxidoreductase |
* | * | ÷ | NZ_CP009273 | 1127558 | 1127608 | 51 | 3 [1] | [1] 2 | flgD | flagellar hook assembly protein FlgD |
* | * | ÷ | NZ_CP009273 | 1134837 | 1134909 | 73 | 2 [1] | [1] 2 | flgK | flagellar hook‑associated protein FlgK |
* | * | ÷ | NZ_CP009273 | 1135051 | 1135069 | 19 | 2 [0] | [1] 2 | flgK | flagellar hook‑associated protein FlgK |
* | * | ÷ | NZ_CP009273 | 1136613 | 1136627 | 15 | 2 [0] | [1] 2 | flgL/rne | flagellar hook‑associated protein FlgL/ribonuclease E |
* | * | ÷ | NZ_CP009273 | 1144639 | 1144695 | 57 | 2 [1] | [1] 3 | fabH | beta‑ketoacyl‑ACP synthase III |
* | * | ÷ | NZ_CP009273 | 1146158 | 1146247 | 90 | 2 [1] | [0] 2 | fabG | 3‑oxoacyl‑ACP reductase FabG |
* | * | ÷ | NZ_CP009273 | 1148711 | 1148738 | 28 | 2 [1] | [0] 2 | fabF/pabC | beta‑ketoacyl‑ACP synthase II/aminodeoxychorismate lyase |
* | * | ÷ | NZ_CP009273 | 1157691 | 1157693 | 3 | 5 [0] | [1] 2 | hinT | purine nucleoside phosphoramidase |
* | * | ÷ | NZ_CP009273 | 1158161 | 1158224 | 64 | 2 [1] | [1] 2 | lpoB | penicillin‑binding protein activator LpoB |
* | * | ÷ | NZ_CP009273 | 1159331 | 1159357 | 27 | 2 [1] | [0] 2 | thiK | thiamine kinase |
* | * | ÷ | NZ_CP009273 | 1161985 | 1162034 | 50 | 2 [1] | [1] 2 | ndh | NADH‑quinone dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1164095 | 1164137 | 43 | 2 [1] | [1] 2 | comR | TetR family copper‑responsive transcriptional repressor ComR |
* | * | ÷ | NZ_CP009273 | 1164269 | 1164320 | 52 | 2 [0] | [0] 2 | [comR] | [comR] |
* | * | ÷ | NZ_CP009273 | 1164381 | 1164453 | 73 | 2 [0] | [1] 3 | comR/bhsA | TetR family copper‑responsive transcriptional repressor ComR/multiple stress resistance protein BhsA |
* | * | ÷ | NZ_CP009273 | 1165692 | 1165735 | 44 | 3 [1] | [1] 2 | ldtC | L,D‑transpeptidase LdtC |
* | * | ÷ | NZ_CP009273 | 1166070 | 1166145 | 76 | 2 [1] | [1] 2 | mfd | transcription‑repair coupling factor |
* | * | ÷ | NZ_CP009273 | 1167709 | 1167760 | 52 | 2 [1] | [1] 2 | mfd | transcription‑repair coupling factor |
* | * | ÷ | NZ_CP009273 | 1168155 | 1168223 | 69 | 2 [1] | [1] 2 | mfd | transcription‑repair coupling factor |
* | * | ÷ | NZ_CP009273 | 1172313 | 1172363 | 51 | 2 [1] | [1] 2 | lolD | lipoprotein‑releasing ABC transporter ATP‑binding protein LolD |
* | * | ÷ | NZ_CP009273 | 1177391 | 1177460 | 70 | 2 [1] | [1] 3 | potD | spermidine/putrescine ABC transporter substrate‑binding protein PotD |
* | * | ÷ | NZ_CP009273 | 1182104 | 1182136 | 33 | 2 [1] | [1] 2 | pepT | peptidase T |
* | * | ÷ | NZ_CP009273 | 1189468 | 1189537 | 70 | 2 [1] | [1] 2 | nudJ | phosphatase NudJ |
* | * | ÷ | NZ_CP009273 | 1196709 | 1196811 | 103 | 2 [1] | [0] 2 | BW25113_RS25530 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 1200961 | 1201035 | 75 | 2 [1] | [1] 2 | [BW25113_RS05965]–[BW25113_RS05970] | [BW25113_RS05965],[BW25113_RS05970] |
* | * | ÷ | NZ_CP009273 | 1201256 | 1201276 | 21 | 2 [1] | [1] 3 | BW25113_RS05975 | phage portal protein |
* | * | ÷ | NZ_CP009273 | 1202672 | 1202699 | 28 | 2 [1] | [0] 2 | ymfQ | YmfQ family protein |
* | * | ÷ | NZ_CP009273 | 1202751 | 1202766 | 16 | 2 [0] | [1] 4 | ymfQ | YmfQ family protein |
* | * | ÷ | NZ_CP009273 | 1217293 | 1217336 | 44 | 3 [1] | [1] 3 | BW25113_RS25990 | autotransporter outer membrane beta‑barrel domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1220624 | 1220690 | 67 | 2 [1] | [1] 2 | minD | septum site‑determining protein MinD |
* | * | ÷ | NZ_CP009273 | 1223354 | 1223393 | 40 | 3 [0] | [1] 2 | BW25113_RS06140 | YcgL domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1233582 | 1233632 | 51 | 2 [1] | [1] 3 | dadA | D‑amino acid dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1237780 | 1237808 | 29 | 3 [1] | [1] 3 | ldcA | muramoyltetrapeptide carboxypeptidase |
* | * | ÷ | NZ_CP009273 | 1238333 | 1238358 | 26 | 2 [1] | [1] 2 | ldcA | muramoyltetrapeptide carboxypeptidase |
* | * | ÷ | NZ_CP009273 | 1240225 | 1240299 | 75 | 2 [1] | [1] 2 | ymgE | GlsB/YeaQ/YmgE family stress response membrane protein |
* | * | ÷ | NZ_CP009273 | 1240683 | 1240726 | 44 | 2 [0] | [1] 3 | BW25113_RS06225 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 1241726 | 1241781 | 56 | 2 [1] | [0] 2 | treA | alpha,alpha‑trehalase |
* | * | ÷ | NZ_CP009273 | 1244324 | 1244354 | 31 | 2 [1] | [0] 4 | dhaM | dihydroxyacetone kinase phosphoryl donor subunit DhaM |
* | * | ÷ | NZ_CP009273 | 1247263 | 1247287 | 25 | 2 [0] | [1] 3 | dhaR | dihydroxyacetone kinase operon transcriptional regulator DhaR |
* | * | ÷ | NZ_CP009273 | 1247536 | 1247605 | 70 | 2 [1] | [1] 2 | dhaR | dihydroxyacetone kinase operon transcriptional regulator DhaR |
* | * | ÷ | NZ_CP009273 | 1258286 | 1258295 | 10 | 2 [1] | [1] 2 | ispE | 4‑(cytidine 5'‑diphospho)‑2‑C‑methyl‑D‑erythritol kinase |
* | * | ÷ | NZ_CP009273 | 1258573 | 1258628 | 56 | 2 [1] | [1] 2 | lolB | lipoprotein insertase outer membrane protein LolB |
* | * | ÷ | NZ_CP009273 | 1259310 | 1259425 | 116 | 2 [1] | [1] 3 | hemA | glutamyl‑tRNA reductase |
* | * | ÷ | NZ_CP009273 | 1259629 | 1259654 | 26 | 2 [1] | [1] 3 | hemA | glutamyl‑tRNA reductase |
* | * | ÷ | NZ_CP009273 | 1275811 | 1275874 | 64 | 2 [1] | [1] 2 | narG | nitrate reductase subunit alpha |
* | * | ÷ | NZ_CP009273 | 1276644 | 1276677 | 34 | 2 [0] | [1] 2 | narG | nitrate reductase subunit alpha |
* | * | ÷ | NZ_CP009273 | 1277441 | 1277463 | 23 | 2 [0] | [1] 2 | narG | nitrate reductase subunit alpha |
* | * | ÷ | NZ_CP009273 | 1279795 | 1279887 | 93 | 2 [1] | [1] 5 | narH | nitrate reductase subunit beta |
* | * | ÷ | NZ_CP009273 | 1281170 | 1281219 | 50 | 2 [0] | [1] 2 | narJ | nitrate reductase molybdenum cofactor assembly chaperone |
* | * | ÷ | NZ_CP009273 | 1281517 | 1281556 | 40 | 3 [0] | [1] 2 | narI | respiratory nitrate reductase subunit gamma |
* | * | ÷ | NZ_CP009273 | 1282651 | 1282675 | 25 | 3 [1] | [1] 2 | [BW25113_RS23095] | [BW25113_RS23095] |
* | * | ÷ | NZ_CP009273 | 1289517 | 1289546 | 30 | 3 [1] | [0] 2 | tdk | thymidine kinase |
* | * | ÷ | NZ_CP009273 | 1289583 | 1289612 | 30 | 2 [0] | [1] 2 | [tdk] | [tdk] |
* | * | ÷ | NZ_CP009273 | 1291795 | 1291851 | 57 | 2 [1] | [0] 2 | adhE | bifunctional acetaldehyde‑CoA/alcohol dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1308650 | 1308656 | 7 | 2 [1] | [0] 3 | ompW | outer membrane protein OmpW |
* | * | ÷ | NZ_CP009273 | 1309658 | 1309766 | 109 | 2 [1] | [1] 3 | yciF | ferritin‑like domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1311137 | 1311168 | 32 | 2 [1] | [1] 2 | trpA | tryptophan synthase subunit alpha |
* | * | ÷ | NZ_CP009273 | 1312109 | 1312151 | 43 | 2 [1] | [1] 2 | trpB | tryptophan synthase subunit beta |
* | * | ÷ | NZ_CP009273 | 1312465 | 1312566 | 102 | 2 [1] | [1] 2 | trpB | tryptophan synthase subunit beta |
* | * | ÷ | NZ_CP009273 | 1312690 | 1312814 | 125 | 2 [1] | [1] 2 | trpCF | bifunctional indole‑3‑glycerol‑phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF |
* | * | ÷ | NZ_CP009273 | 1313542 | 1313560 | 19 | 2 [0] | [1] 3 | trpCF | bifunctional indole‑3‑glycerol‑phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF |
* | * | ÷ | NZ_CP009273 | 1314757 | 1314809 | 53 | 3 [1] | [1] 3 | trpD | bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD |
* | * | ÷ | NZ_CP009273 | 1315769 | 1315822 | 54 | 2 [1] | [1] 2 | trpE | anthranilate synthase component I |
* | * | ÷ | NZ_CP009273 | 1316664 | 1316686 | 23 | 2 [1] | [0] 2 | trpE | anthranilate synthase component I |
* | * | ÷ | NZ_CP009273 | 1319213 | 1319253 | 41 | 2 [0] | [1] 2 | yciQ | DUF2207 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1321953 | 1321979 | 27 | 2 [1] | [1] 2 | rluB | 23S rRNA pseudouridine(2605) synthase RluB |
* | * | ÷ | NZ_CP009273 | 1323220 | 1323258 | 39 | 2 [1] | [1] 3 | yciK | YciK family oxidoreductase |
* | * | ÷ | NZ_CP009273 | 1323465 | 1323468 | 4 | 2 [0] | [0] 2 | yciK/sohB | YciK family oxidoreductase/protease SohB |
* | * | ÷ | NZ_CP009273 | 1325771 | 1325781 | 11 | 5 [1] | [0] 2 | topA | type I DNA topoisomerase |
* | * | ÷ | NZ_CP009273 | 1326850 | 1326871 | 22 | 2 [1] | [1] 3 | topA | type I DNA topoisomerase |
* | * | ÷ | NZ_CP009273 | 1333946 | 1333960 | 15 | 2 [1] | [1] 2 | pgpB | phosphatidylglycerophosphatase B |
* | * | ÷ | NZ_CP009273 | 1335407 | 1335451 | 45 | 2 [1] | [1] 2 | lapB | lipopolysaccharide assembly protein LapB |
* | * | ÷ | NZ_CP009273 | 1341698 | 1341729 | 32 | 2 [1] | [1] 2 | rnb | exoribonuclease II |
* | * | ÷ | NZ_CP009273 | 1341817 | 1341833 | 17 | 2 [1] | [1] 2 | rnb | exoribonuclease II |
* | * | ÷ | NZ_CP009273 | 1344043 | 1344060 | 18 | 2 [1] | [0] 2 | yciW | CMD domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1346008 | 1346113 | 106 | 3 [1] | [1] 2 | [ycjD]–[sapF] | [ycjD],[sapF] |
* | * | ÷ | NZ_CP009273 | 1352576 | 1352617 | 42 | 3 [1] | [1] 2 | puuP | putrescine/proton symporter PuuP |
* | * | ÷ | NZ_CP009273 | 1353501 | 1353517 | 17 | 3 [1] | [0] 2 | BW25113_RS25565 | protein YmjE |
* | * | ÷ | NZ_CP009273 | 1353713 | 1353746 | 34 | 2 [0] | [1] 2 | BW25113_RS25565/puuA | protein YmjE/glutamate‑putrescine ligase |
* | * | ÷ | NZ_CP009273 | 1354216 | 1354309 | 94 | 2 [1] | [1] 2 | puuA | glutamate‑putrescine ligase |
* | * | ÷ | NZ_CP009273 | 1359393 | 1359443 | 51 | 2 [1] | [1] 2 | puuB | gamma‑glutamylputrescine oxidase |
* | * | ÷ | NZ_CP009273 | 1359978 | 1360043 | 66 | 2 [1] | [0] 2 | puuE | 4‑aminobutyrate transaminase |
* | * | ÷ | NZ_CP009273 | 1363813 | 1363913 | 101 | 2 [1] | [1] 2 | [pspD] | [pspD] |
* | * | ÷ | NZ_CP009273 | 1373027 | 1373067 | 41 | 2 [1] | [1] 2 | ycjT | kojibiose phosphorylase |
* | * | ÷ | NZ_CP009273 | 1381662 | 1381694 | 33 | 2 [0] | [1] 4 | tyrR | transcriptional regulator TyrR |
* | * | ÷ | NZ_CP009273 | 1381785 | 1381815 | 31 | 2 [1] | [0] 2 | tyrR | transcriptional regulator TyrR |
* | * | ÷ | NZ_CP009273 | 1389804 | 1389840 | 37 | 2 [0] | [1] 3 | ynaI | low conductance mechanosensitive channel YnaI |
* | * | ÷ | NZ_CP009273 | 1396700 | 1396749 | 50 | 4 [1] | [1] 2 | abgB | p‑aminobenzoyl‑glutamate hydrolase subunit AbgB |
* | * | ÷ | NZ_CP009273 | 1401132 | 1401142 | 11 | 2 [0] | [0] 3 | dgcM | diguanylate cyclase DgcM |
* | * | ÷ | NZ_CP009273 | 1403790 | 1403826 | 37 | 3 [1] | [1] 3 | dbpA | ATP‑dependent RNA helicase DbpA |
* | * | ÷ | NZ_CP009273 | 1424081 | 1424199 | 119 | 2 [1] | [1] 2 | stfR | prophage tail fiber N‑terminal domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1434431 | 1434515 | 85 | 2 [0] | [1] 2 | nifJ | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
* | * | ÷ | NZ_CP009273 | 1448730 | 1448764 | 35 | 3 [1] | [1] 2 | paaA | 1,2‑phenylacetyl‑CoA epoxidase subunit A |
* | * | ÷ | NZ_CP009273 | 1450732 | 1450744 | 13 | 2 [0] | [1] 2 | paaK | phenylacetate‑CoA oxygenase/reductase subunit PaaK |
* | * | ÷ | NZ_CP009273 | 1453629 | 1453669 | 41 | 2 [1] | [1] 3 | paaC | 3‑hydroxyacyl‑CoA dehydrogenase PaaC |
* | * | ÷ | NZ_CP009273 | 1455105 | 1455133 | 29 | 2 [0] | [1] 2 | paaI | hydroxyphenylacetyl‑CoA thioesterase PaaI |
* | * | ÷ | NZ_CP009273 | 1469862 | 1469870 | 9 | 3 [1] | [0] 4 | ydbD | DUF2773 domain‑containing bactofilin |
* | * | ÷ | NZ_CP009273 | 1603046 | 1603050 | 5 | 2 [1] | [1] 2 | yneE | bestrophin family protein |
* | * | ÷ | NZ_CP009273 | 1698522 | 1698536 | 15 | 2 [1] | [1] 5 | ydgJ | oxidoreductase |
* | * | ÷ | NZ_CP009273 | 1704328 | 1704337 | 10 | 3 [0] | [1] 3 | rsxD | electron transport complex subunit RsxD |
* | * | ÷ | NZ_CP009273 | 1775931 | 1775952 | 22 | 3 [1] | [1] 2 | ydiS | FAD‑dependent oxidoreductase |
* | * | ÷ | NZ_CP009273 | 1818840 | 1818862 | 23 | 2 [1] | [0] 2 | ves | environmental stress‑induced protein Ves |
* | * | ÷ | NZ_CP009273 | 1823362 | 1823373 | 12 | 3 [0] | [0] 2 | astD | succinylglutamate‑semialdehyde dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1832149 | 1832209 | 61 | 3 [1] | [1] 2 | ynjC | ABC transporter permease subunit |
* | * | ÷ | NZ_CP009273 | 1876271 | 1876324 | 54 | 3 [1] | [0] 2 | dmlA | multifunctional D‑malate/3‑isopropylmalate/tartarate dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1932042 | 1932086 | 45 | 2 [1] | [1] 2 | pyk | pyruvate kinase |
* | * | ÷ | NZ_CP009273 | 1933453 | 1933458 | 6 | 3 [1] | [0] 2 | pyk/lpxM | pyruvate kinase/lauroyl‑Kdo(2)‑lipid IV(A) myristoyltransferase |
* | * | ÷ | NZ_CP009273 | 1972752 | 1972792 | 41 | 21 [0] | [1] 2 | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
* | * | ÷ | NZ_CP009273 | 1978334 | 1978339 | 6 | 2 [0] | [1] 2 | araG | arabinose ABC transporter ATP‑binding protein AraG |
* | * | ÷ | NZ_CP009273 | 1984141 | 1984151 | 11 | 3 [1] | [0] 3 | tyrP | tyrosine transporter TyrP |
* | * | ÷ | NZ_CP009273 | 2001035 | 2001091 | 57 | 2 [0] | [1] 3 | amyA | alpha‑amylase |
* | * | ÷ | NZ_CP009273 | 2001809 | 2001844 | 36 | 3 [0] | [1] 2 | yedE | selenium metabolism membrane protein YedE/FdhT |
* | * | ÷ | NZ_CP009273 | 2042738 | 2042767 | 30 | 2 [1] | [1] 2 | yeeJ | inverse autotransporter adhesin YeeJ |
* | * | ÷ | NZ_CP009273 | 2047920 | 2047935 | 16 | 3 [1] | [1] 4 | shiA | shikimate transporter |
* | * | ÷ | NZ_CP009273 | 2143538 | 2143553 | 16 | 2 [0] | [1] 2 | yegI | protein kinase YegI |
* | * | ÷ | NZ_CP009273 | 2157528 | 2157545 | 18 | 2 [0] | [1] 3 | baeS | two‑component system sensor histidine kinase BaeS |
* | * | ÷ | NZ_CP009273 | 2169740 | 2169794 | 55 | 2 [1] | [1] 2 | gatZ | tagatose‑bisphosphate aldolase subunit GatZ |
* | * | ÷ | NZ_CP009273 | 2174784 | 2174850 | 67 | 2 [0] | [1] 2 | yegV | carbohydrate kinase family protein |
* | * | ÷ | NZ_CP009273 | 2192958 | 2192966 | 9 | 2 [0] | [1] 2 | BW25113_RS25680 | WGR and DUF4132 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 2194031 | 2194057 | 27 | 2 [1] | [1] 4 | BW25113_RS11045 | DUF4132 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 2207743 | 2207806 | 64 | 3 [1] | [1] 2 | btsS | two‑component regulatory system sensor histidine kinase BtsS |
* | * | ÷ | NZ_CP009273 | 2210592 | 2210629 | 38 | 2 [1] | [1] 2 | yehX | glycine betaine ABC transporter ATP binding protein YehX |
* | * | ÷ | NZ_CP009273 | 2288373 | 2288404 | 32 | 2 [1] | [0] 2 | [ccmF]–[ccmE] | [ccmF],[ccmE] |
* | * | ÷ | NZ_CP009273 | 2295947 | 2295957 | 11 | 2 [1] | [0] 3 | napA | periplasmic nitrate reductase subunit alpha |
* | * | ÷ | NZ_CP009273 | 2370382 | 2370459 | 78 | 3 [1] | [1] 2 | menH | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
* | * | ÷ | NZ_CP009273 | 2371937 | 2371969 | 33 | 2 [1] | [1] 2 | menD | 2‑succinyl‑5‑enolpyruvyl‑6‑hydroxy‑3‑ cyclohexene‑1‑carboxylic‑acid synthase |
* | * | ÷ | NZ_CP009273 | 2413791 | 2413805 | 15 | 2 [1] | [0] 2 | yfcF | glutathione transferase |
* | * | ÷ | NZ_CP009273 | 2545527 | 2545541 | 15 | 3 [1] | [1] 2 | ypeA/amiA | GNAT family acetyltransferase/N‑acetylmuramoyl‑L‑alanine amidase AmiA |
* | * | ÷ | NZ_CP009273 | 2563769 | 2563823 | 55 | 4 [1] | [1] 2 | eutE | aldehyde dehydrogenase EutE |
* | * | ÷ | NZ_CP009273 | 2575026 | 2575081 | 56 | 2 [1] | [1] 2 | tkt/ypfG | transketolase/DUF1176 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 2600578 | 2600645 | 68 | 2 [1] | [1] 2 | hyfF | hydrogenase 4 subunit F |
* | * | ÷ | NZ_CP009273 | 2609267 | 2609325 | 59 | 3 [1] | [1] 2 | yfgO/bepA | AI‑2E family transporter/beta‑barrel assembly‑enhancing protease |
* | * | ÷ | NZ_CP009273 | 2615537 | 2615561 | 25 | 2 [0] | [1] 2 | purM | phosphoribosylformylglycinamidine cyclo‑ligase |
* | * | ÷ | NZ_CP009273 | 2616090 | 2616138 | 49 | 2 [1] | [1] 2 | purN | phosphoribosylglycinamide formyltransferase |
* | * | ÷ | NZ_CP009273 | 2637069 | 2637089 | 21 | 2 [1] | [1] 2 | rlmN | bifunctional tRNA (adenosine(37)‑C2)‑methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN |
* | * | ÷ | NZ_CP009273 | 2660142 | 2660165 | 24 | 2 [1] | [1] 2 | hcaT | 3‑phenylpropionate MFS transporter |
* | * | ÷ | NZ_CP009273 | 2665108 | 2665156 | 49 | 2 [1] | [0] 2 | hcaB | 3‑phenylpropionate‑dihydrodiol/cinnamic acid‑dihydrodiol dehydrogenase |
* | * | ÷ | NZ_CP009273 | 2665768 | 2665793 | 26 | 3 [1] | [1] 2 | hcaD | phenylpropionate dioxygenase ferredoxin reductase subunit |
* | * | ÷ | NZ_CP009273 | 2669499 | 2669510 | 12 | 2 [1] | [0] 2 | yphD | ABC transporter permease |
* | * | ÷ | NZ_CP009273 | 2687939 | 2688060 | 122 | 2 [1] | [1] 2 | purL | phosphoribosylformylglycinamidine synthase |
* | * | ÷ | NZ_CP009273 | 2725963 | 2725974 | 12 | 2 [0] | [1] 3 | clpB | ATP‑dependent chaperone ClpB |
* | * | ÷ | NZ_CP009273 | 2766820 | 2766829 | 10 | 2 [1] | [1] 2 | BW25113_RS13770 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2905226 | 2905314 | 89 | 2 [1] | [1] 2 | relA | GTP pyrophosphokinase |
* | * | ÷ | NZ_CP009273 | 3305856 | 3305914 | 59 | 3 [1] | [1] 2 | truB | tRNA pseudouridine(55) synthase TruB |
* | * | ÷ | NZ_CP009273 | 3351286 | 3351329 | 44 | 2 [1] | [1] 2 | gltB | glutamate synthase large subunit |
* | * | ÷ | NZ_CP009273 | 3695337 | 3695362 | 26 | 2 [1] | [1] 2 | dppF | dipeptide ABC transporter ATP‑binding subunit DppF |
* | * | ÷ | NZ_CP009273 | 4008480 | 4008489 | 10 | 2 [0] | [0] 2 | metE | 5‑methyltetrahydropteroyltriglutamate‑‑ homocysteine S‑methyltransferase |
* | * | ÷ | NZ_CP009273 | 4021377 | 4021434 | 58 | 2 [1] | [1] 2 | fadA | acetyl‑CoA C‑acyltransferase FadA |
* | * | ÷ | NZ_CP009273 | 4120568 | 4120629 | 62 | 3 [1] | [1] 2 | metL | bifunctional aspartate kinase/homoserine dehydrogenase II |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | 360104 = | NA (NA) | 6 (0.540) | 5/168 | 0.6 | 42.9% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
? | NZ_CP009273 | = 360286 | 8 (0.710) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
* | ? | NZ_CP009273 | = 1972751 | 0 (0.000) | 21 (1.880) | 14/168 | 0.1 | 100% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||
* | ? | NZ_CP009273 | = 3498948 | 7 (0.630) | 3 (0.290) | 3/158 | 0.9 | 30.6% | coding (432/1086 nt) | yhfS | aminotransferase class I/II‑fold pyridoxal phosphate‑dependent enzyme |
? | NZ_CP009273 | = 3498961 | 7 (0.670) | coding (419/1086 nt) | yhfS | aminotransferase class I/II‑fold pyridoxal phosphate‑dependent enzyme | |||||
* | ? | NZ_CP009273 | 3717977 = | 7 (0.630) | 3 (0.310) | 3/144 | 0.9 | 33.3% | coding (702/912 nt) | glyQ | glycine‑‑tRNA ligase subunit alpha |
? | NZ_CP009273 | 3717989 = | 6 (0.630) | coding (690/912 nt) | glyQ | glycine‑‑tRNA ligase subunit alpha | |||||
* | ? | NZ_CP009273 | 4532499 = | 1 (0.090) | 8 (0.800) | 8/150 | 0.3 | 80.4% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
? | NZ_CP009273 | 4532813 = | 3 (0.300) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
* | ? | NZ_CP009273 | = 4532507 | 1 (0.090) | 9 (0.900) | 8/150 | 0.3 | 82.2% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
? | NZ_CP009273 | = 4532803 | 3 (0.300) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |