breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 49,765 C→T intergenic (+134/‑58) kefC → / → folA glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase
RA 49,912 G→T W30C (TGG→TGT)  folA → type 3 dihydrofolate reductase
MC JC 2,399,465 Δ7 bp coding (650‑656/939 nt) lrhA ← transcriptional regulator LrhA

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 158253 158268 16 2 [1] [1] 2 thpR RNA 2',3'‑cyclic phosphodiesterase
* * ÷ NZ_CP009273 248580 248591 12 2 [1] [0] 2 yafN type I toxin‑antitoxin system antitoxin YafN
* * ÷ NZ_CP009273 355815 355845 31 2 [1] [1] 2 cynX cyanate transporter CynX
* * ÷ NZ_CP009273 356957 357576 620 2 [1] [1] 2 lacA lacA
* * ÷ NZ_CP009273 430511 430526 16 3 [1] [1] 3 ribE 6,7‑dimethyl‑8‑ribityllumazine synthase
* * ÷ NZ_CP009273 514343 514358 16 3 [1] [0] 2 ybbO NADP(+)‑dependent aldehyde reductase
* * ÷ NZ_CP009273 514401 514447 47 2 [0] [1] 2 ybbO NADP(+)‑dependent aldehyde reductase
* * ÷ NZ_CP009273 580718 580736 19 2 [1] [1] 2 ompT omptin family outer membrane protease OmpT
* * ÷ NZ_CP009273 591051 591089 39 2 [1] [1] 3 [cusC] [cusC]
* * ÷ NZ_CP009273 618571 618579 9 2 [1] [1] 3 entS enterobactin transporter EntS
* * ÷ NZ_CP009273 619564 619583 20 3 [1] [1] 2 fepB Fe2+‑enterobactin ABC transporter substrate‑binding protein
* * ÷ NZ_CP009273 644453 644502 50 3 [0] [1] 2 citF citrate lyase subunit alpha
* * ÷ NZ_CP009273 664599 664619 21 2 [1] [1] 3 rsfS/cobC ribosome silencing factor/adenosylcobalamin/alpha‑ribazole phosphatase
* * ÷ NZ_CP009273 686248 686261 14 2 [1] [0] 2 lnt apolipoprotein N‑acyltransferase
* * ÷ NZ_CP009273 696287 696309 23 3 [1] [1] 2 nagC DNA‑binding transcriptional regulator NagC
* * ÷ NZ_CP009273 700297 700335 39 3 [1] [1] 2 nagE PTS N‑acetyl glucosamine transporter subunit IIABC
* * ÷ NZ_CP009273 703467 703536 70 2 [1] [0] 2 glnS/chiP glutamine‑‑tRNA ligase/chitoporin
* * ÷ NZ_CP009273 715587 715609 23 2 [0] [1] 2 speF ornithine decarboxylase SpeF
* * ÷ NZ_CP009273 719006 719030 25 3 [1] [1] 3 kdpD two‑component system sensor histidine kinase KdpD
* * ÷ NZ_CP009273 722941 722959 19 2 [1] [1] 2 kdpA potassium‑transporting ATPase subunit KdpA
* * ÷ NZ_CP009273 737658 737681 24 2 [1] [1] 2 dtpD dipeptide permease DtpD
* * ÷ NZ_CP009273 741796 741822 27 2 [1] [1] 2 nei endonuclease VIII
* * ÷ NZ_CP009273 745900 745912 13 3 [1] [1] 2 ybgQ fimbrial biogenesis outer membrane usher protein
* * ÷ NZ_CP009273 746636 746661 26 2 [1] [0] 3 ybgQ fimbrial biogenesis outer membrane usher protein
* * ÷ NZ_CP009273 762592 762670 79 2 [1] [1] 2 mngA PTS 2‑O‑a‑mannosyl‑D‑glycerate transporter subunit IIABC
* * ÷ NZ_CP009273 778759 778781 23 2 [1] [0] 2 pnuC nicotinamide riboside transporter PnuC
* * ÷ NZ_CP009273 790364 790397 34 2 [1] [1] 2 [acrZ] [acrZ]
* * ÷ NZ_CP009273 792069 792086 18 2 [1] [1] 2 modC molybdenum ABC transporter ATP‑binding protein ModC
* * ÷ NZ_CP009273 798985 799071 87 2 [1] [0] 2 ybhJ hydratase
* * ÷ NZ_CP009273 814519 814556 38 2 [1] [1] 2 moaD molybdopterin synthase sulfur carrier subunit
* * ÷ NZ_CP009273 823586 823628 43 2 [1] [1] 2 ybhF ATP‑binding cassette domain‑containing protein
* * ÷ NZ_CP009273 827678 827691 14 2 [1] [1] 2 rhlE ATP‑dependent RNA helicase RhlE
* * ÷ NZ_CP009273 830974 831059 86 3 [1] [1] 2 ybiB DNA‑binding protein YbiB
* * ÷ NZ_CP009273 845176 845221 46 2 [1] [1] 2 rhtA threonine/homoserine exporter RhtA
* * ÷ NZ_CP009273 852350 852360 11 3 [0] [1] 2 ybiT ABC‑F family ATPase
* * ÷ NZ_CP009273 863295 863347 53 2 [1] [1] 2 gsiA glutathione ABC transporter ATP‑binding protein GsiA
* * ÷ NZ_CP009273 864320 864352 33 3 [1] [0] 2 gsiA glutathione ABC transporter ATP‑binding protein GsiA
* * ÷ NZ_CP009273 889471 889521 51 3 [0] [1] 2 potF spermidine/putrescine ABC transporter substrate‑binding protein PotF
* * ÷ NZ_CP009273 893411 893502 92 6 [1] [1] 2 [ybjO] [ybjO]
* * ÷ NZ_CP009273 897283 897356 74 2 [1] [1] 2 artQ arginine ABC transporter permease ArtQ
* * ÷ NZ_CP009273 903033 903103 71 2 [1] [1] 2 ybjT SDR family oxidoreductase
* * ÷ NZ_CP009273 903932 904038 107 2 [1] [1] 3 ltaE low‑specificity L‑threonine aldolase
* * ÷ NZ_CP009273 905417 905497 81 2 [1] [1] 2 poxB ubiquinone‑dependent pyruvate dehydrogenase
* * ÷ NZ_CP009273 915104 915162 59 2 [1] [1] 2 macA macrolide transporter subunit MacA
* * ÷ NZ_CP009273 931345 931373 29 2 [1] [1] 2 ftsK DNA translocase FtsK
* * ÷ NZ_CP009273 940610 940676 67 2 [1] [1] 2 ycaC hydrolase
* * ÷ NZ_CP009273 940773 940827 55 2 [1] [1] 2 ycaC hydrolase
* * ÷ NZ_CP009273 941766 941860 95 2 [1] [1] 2 ycaD MFS transporter
* * ÷ NZ_CP009273 950037 950087 51 2 [1] [1] 2 focA/ycaO formate transporter FocA/30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
* * ÷ NZ_CP009273 954643 954745 103 2 [1] [1] 2 aroA 3‑phosphoshikimate 1‑carboxyvinyltransferase
* * ÷ NZ_CP009273 967504 967568 65 2 [1] [1] 2 ycbJ YcbJ family phosphotransferase
* * ÷ NZ_CP009273 968176 968285 110 2 [1] [1] 2 elyC envelope biogenesis factor ElyC
* * ÷ NZ_CP009273 970802 970819 18 2 [1] [1] 3 mukF chromosome partition protein MukF
* * ÷ NZ_CP009273 978452 978510 59 2 [1] [0] 2 ldtD/mepK L,D‑transpeptidase/YcbK family protein
* * ÷ NZ_CP009273 980851 980870 20 2 [1] [1] 2 aspC aspartate transaminase
* * ÷ NZ_CP009273 989357 989393 37 2 [1] [0] 2 ssuB aliphatic sulfonates ABC transporter ATP‑binding protein
* * ÷ NZ_CP009273 989839 989849 11 2 [0] [1] 3 ssuC aliphatic sulfonate ABC transporter permease SsuC
* * ÷ NZ_CP009273 999404 999454 51 4 [0] [0] 2 ycbF fimbrial chaperone
* * ÷ NZ_CP009273 1004214 1004224 11 8 [1] [0] 2 rlmKL bifunctional 23S rRNA (guanine(2069)‑N(7))‑methyltransferase RlmK/23S rRNA (guanine(2445)‑N(2))‑methyltransferase RlmL
* * ÷ NZ_CP009273 1008503 1008512 10 2 [0] [1] 2 pqiA membrane integrity‑associated transporter subunit PqiA
* * ÷ NZ_CP009273 1011145 1011170 26 2 [1] [1] 2 pqiC/rmf membrane integrity‑associated transporter subunit PqiC/ribosome modulation factor
* * ÷ NZ_CP009273 1013328 1013418 91 2 [1] [1] 2 ycbZ Lon protease family protein
* * ÷ NZ_CP009273 1028623 1028653 31 2 [0] [1] 2 hyaA hydrogenase 1 small subunit
* * ÷ NZ_CP009273 1038760 1038775 16 2 [1] [1] 2 etk tyrosine‑protein kinase
* * ÷ NZ_CP009273 1042699 1042744 46 3 [1] [1] 2 gfcD YjbH domain‑containing protein
* * ÷ NZ_CP009273 1051194 1051259 66 2 [1] [1] 3 torS TMAO reductase system sensor histidine kinase/response regulator TorS
* * ÷ NZ_CP009273 1052441 1052505 65 2 [1] [1] 2 torT TMAO reductase system periplasmic protein TorT
* * ÷ NZ_CP009273 1058714 1058732 19 2 [1] [1] 2 cbpA curved DNA‑binding protein
* * ÷ NZ_CP009273 1067003 1067067 65 3 [1] [1] 2 rutD pyrimidine utilization protein D
* * ÷ NZ_CP009273 1068184 1068194 11 3 [0] [1] 2 rutB peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB
* * ÷ NZ_CP009273 1069470 1069496 27 2 [1] [1] 2 rutA/rutR pyrimidine utilization protein A/HTH‑type transcriptional regulator RutR
* * ÷ NZ_CP009273 1073244 1073334 91 2 [1] [1] 3 putA trifunctional transcriptional regulator/proline dehydrogenase/L‑glutamate gamma‑semialdehyde dehydrogenase
* * ÷ NZ_CP009273 1077462 1077479 18 2 [1] [1] 2 BW25113_RS05295 FTR1 family protein
* * ÷ NZ_CP009273 1110649 1110691 43 3 [1] [1] 2 mdtG multidrug efflux MFS transporter MdtG
* * ÷ NZ_CP009273 1118274 1118318 45 2 [1] [0] 2 yceB lipoprotein
* * ÷ NZ_CP009273 1118372 1118464 93 3 [1] [0] 2 yceB lipoprotein
* * ÷ NZ_CP009273 1122271 1122294 24 2 [1] [1] 2 yceM Gfo/Idh/MocA family oxidoreductase
* * ÷ NZ_CP009273 1127558 1127608 51 3 [1] [1] 2 flgD flagellar hook assembly protein FlgD
* * ÷ NZ_CP009273 1134837 1134909 73 2 [1] [1] 2 flgK flagellar hook‑associated protein FlgK
* * ÷ NZ_CP009273 1135051 1135069 19 2 [0] [1] 2 flgK flagellar hook‑associated protein FlgK
* * ÷ NZ_CP009273 1136613 1136627 15 2 [0] [1] 2 flgL/rne flagellar hook‑associated protein FlgL/ribonuclease E
* * ÷ NZ_CP009273 1144639 1144695 57 2 [1] [1] 3 fabH beta‑ketoacyl‑ACP synthase III
* * ÷ NZ_CP009273 1146158 1146247 90 2 [1] [0] 2 fabG 3‑oxoacyl‑ACP reductase FabG
* * ÷ NZ_CP009273 1148711 1148738 28 2 [1] [0] 2 fabF/pabC beta‑ketoacyl‑ACP synthase II/aminodeoxychorismate lyase
* * ÷ NZ_CP009273 1157691 1157693 3 5 [0] [1] 2 hinT purine nucleoside phosphoramidase
* * ÷ NZ_CP009273 1158161 1158224 64 2 [1] [1] 2 lpoB penicillin‑binding protein activator LpoB
* * ÷ NZ_CP009273 1159331 1159357 27 2 [1] [0] 2 thiK thiamine kinase
* * ÷ NZ_CP009273 1161985 1162034 50 2 [1] [1] 2 ndh NADH‑quinone dehydrogenase
* * ÷ NZ_CP009273 1164095 1164137 43 2 [1] [1] 2 comR TetR family copper‑responsive transcriptional repressor ComR
* * ÷ NZ_CP009273 1164269 1164320 52 2 [0] [0] 2 [comR] [comR]
* * ÷ NZ_CP009273 1164381 1164453 73 2 [0] [1] 3 comR/bhsA TetR family copper‑responsive transcriptional repressor ComR/multiple stress resistance protein BhsA
* * ÷ NZ_CP009273 1165692 1165735 44 3 [1] [1] 2 ldtC L,D‑transpeptidase LdtC
* * ÷ NZ_CP009273 1166070 1166145 76 2 [1] [1] 2 mfd transcription‑repair coupling factor
* * ÷ NZ_CP009273 1167709 1167760 52 2 [1] [1] 2 mfd transcription‑repair coupling factor
* * ÷ NZ_CP009273 1168155 1168223 69 2 [1] [1] 2 mfd transcription‑repair coupling factor
* * ÷ NZ_CP009273 1172313 1172363 51 2 [1] [1] 2 lolD lipoprotein‑releasing ABC transporter ATP‑binding protein LolD
* * ÷ NZ_CP009273 1177391 1177460 70 2 [1] [1] 3 potD spermidine/putrescine ABC transporter substrate‑binding protein PotD
* * ÷ NZ_CP009273 1182104 1182136 33 2 [1] [1] 2 pepT peptidase T
* * ÷ NZ_CP009273 1189468 1189537 70 2 [1] [1] 2 nudJ phosphatase NudJ
* * ÷ NZ_CP009273 1196709 1196811 103 2 [1] [0] 2 BW25113_RS25530 hypothetical protein
* * ÷ NZ_CP009273 1200961 1201035 75 2 [1] [1] 2 [BW25113_RS05965]–[BW25113_RS05970] [BW25113_RS05965],[BW25113_RS05970]
* * ÷ NZ_CP009273 1201256 1201276 21 2 [1] [1] 3 BW25113_RS05975 phage portal protein
* * ÷ NZ_CP009273 1202672 1202699 28 2 [1] [0] 2 ymfQ YmfQ family protein
* * ÷ NZ_CP009273 1202751 1202766 16 2 [0] [1] 4 ymfQ YmfQ family protein
* * ÷ NZ_CP009273 1217293 1217336 44 3 [1] [1] 3 BW25113_RS25990 autotransporter outer membrane beta‑barrel domain‑containing protein
* * ÷ NZ_CP009273 1220624 1220690 67 2 [1] [1] 2 minD septum site‑determining protein MinD
* * ÷ NZ_CP009273 1223354 1223393 40 3 [0] [1] 2 BW25113_RS06140 YcgL domain‑containing protein
* * ÷ NZ_CP009273 1233582 1233632 51 2 [1] [1] 3 dadA D‑amino acid dehydrogenase
* * ÷ NZ_CP009273 1237780 1237808 29 3 [1] [1] 3 ldcA muramoyltetrapeptide carboxypeptidase
* * ÷ NZ_CP009273 1238333 1238358 26 2 [1] [1] 2 ldcA muramoyltetrapeptide carboxypeptidase
* * ÷ NZ_CP009273 1240225 1240299 75 2 [1] [1] 2 ymgE GlsB/YeaQ/YmgE family stress response membrane protein
* * ÷ NZ_CP009273 1240683 1240726 44 2 [0] [1] 3 BW25113_RS06225 hypothetical protein
* * ÷ NZ_CP009273 1241726 1241781 56 2 [1] [0] 2 treA alpha,alpha‑trehalase
* * ÷ NZ_CP009273 1244324 1244354 31 2 [1] [0] 4 dhaM dihydroxyacetone kinase phosphoryl donor subunit DhaM
* * ÷ NZ_CP009273 1247263 1247287 25 2 [0] [1] 3 dhaR dihydroxyacetone kinase operon transcriptional regulator DhaR
* * ÷ NZ_CP009273 1247536 1247605 70 2 [1] [1] 2 dhaR dihydroxyacetone kinase operon transcriptional regulator DhaR
* * ÷ NZ_CP009273 1258286 1258295 10 2 [1] [1] 2 ispE 4‑(cytidine 5'‑diphospho)‑2‑C‑methyl‑D‑erythritol kinase
* * ÷ NZ_CP009273 1258573 1258628 56 2 [1] [1] 2 lolB lipoprotein insertase outer membrane protein LolB
* * ÷ NZ_CP009273 1259310 1259425 116 2 [1] [1] 3 hemA glutamyl‑tRNA reductase
* * ÷ NZ_CP009273 1259629 1259654 26 2 [1] [1] 3 hemA glutamyl‑tRNA reductase
* * ÷ NZ_CP009273 1275811 1275874 64 2 [1] [1] 2 narG nitrate reductase subunit alpha
* * ÷ NZ_CP009273 1276644 1276677 34 2 [0] [1] 2 narG nitrate reductase subunit alpha
* * ÷ NZ_CP009273 1277441 1277463 23 2 [0] [1] 2 narG nitrate reductase subunit alpha
* * ÷ NZ_CP009273 1279795 1279887 93 2 [1] [1] 5 narH nitrate reductase subunit beta
* * ÷ NZ_CP009273 1281170 1281219 50 2 [0] [1] 2 narJ nitrate reductase molybdenum cofactor assembly chaperone
* * ÷ NZ_CP009273 1281517 1281556 40 3 [0] [1] 2 narI respiratory nitrate reductase subunit gamma
* * ÷ NZ_CP009273 1282651 1282675 25 3 [1] [1] 2 [BW25113_RS23095] [BW25113_RS23095]
* * ÷ NZ_CP009273 1289517 1289546 30 3 [1] [0] 2 tdk thymidine kinase
* * ÷ NZ_CP009273 1289583 1289612 30 2 [0] [1] 2 [tdk] [tdk]
* * ÷ NZ_CP009273 1291795 1291851 57 2 [1] [0] 2 adhE bifunctional acetaldehyde‑CoA/alcohol dehydrogenase
* * ÷ NZ_CP009273 1308650 1308656 7 2 [1] [0] 3 ompW outer membrane protein OmpW
* * ÷ NZ_CP009273 1309658 1309766 109 2 [1] [1] 3 yciF ferritin‑like domain‑containing protein
* * ÷ NZ_CP009273 1311137 1311168 32 2 [1] [1] 2 trpA tryptophan synthase subunit alpha
* * ÷ NZ_CP009273 1312109 1312151 43 2 [1] [1] 2 trpB tryptophan synthase subunit beta
* * ÷ NZ_CP009273 1312465 1312566 102 2 [1] [1] 2 trpB tryptophan synthase subunit beta
* * ÷ NZ_CP009273 1312690 1312814 125 2 [1] [1] 2 trpCF bifunctional indole‑3‑glycerol‑phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF
* * ÷ NZ_CP009273 1313542 1313560 19 2 [0] [1] 3 trpCF bifunctional indole‑3‑glycerol‑phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF
* * ÷ NZ_CP009273 1314757 1314809 53 3 [1] [1] 3 trpD bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD
* * ÷ NZ_CP009273 1315769 1315822 54 2 [1] [1] 2 trpE anthranilate synthase component I
* * ÷ NZ_CP009273 1316664 1316686 23 2 [1] [0] 2 trpE anthranilate synthase component I
* * ÷ NZ_CP009273 1319213 1319253 41 2 [0] [1] 2 yciQ DUF2207 domain‑containing protein
* * ÷ NZ_CP009273 1321953 1321979 27 2 [1] [1] 2 rluB 23S rRNA pseudouridine(2605) synthase RluB
* * ÷ NZ_CP009273 1323220 1323258 39 2 [1] [1] 3 yciK YciK family oxidoreductase
* * ÷ NZ_CP009273 1323465 1323468 4 2 [0] [0] 2 yciK/sohB YciK family oxidoreductase/protease SohB
* * ÷ NZ_CP009273 1325771 1325781 11 5 [1] [0] 2 topA type I DNA topoisomerase
* * ÷ NZ_CP009273 1326850 1326871 22 2 [1] [1] 3 topA type I DNA topoisomerase
* * ÷ NZ_CP009273 1333946 1333960 15 2 [1] [1] 2 pgpB phosphatidylglycerophosphatase B
* * ÷ NZ_CP009273 1335407 1335451 45 2 [1] [1] 2 lapB lipopolysaccharide assembly protein LapB
* * ÷ NZ_CP009273 1341698 1341729 32 2 [1] [1] 2 rnb exoribonuclease II
* * ÷ NZ_CP009273 1341817 1341833 17 2 [1] [1] 2 rnb exoribonuclease II
* * ÷ NZ_CP009273 1344043 1344060 18 2 [1] [0] 2 yciW CMD domain‑containing protein
* * ÷ NZ_CP009273 1346008 1346113 106 3 [1] [1] 2 [ycjD]–[sapF] [ycjD],[sapF]
* * ÷ NZ_CP009273 1352576 1352617 42 3 [1] [1] 2 puuP putrescine/proton symporter PuuP
* * ÷ NZ_CP009273 1353501 1353517 17 3 [1] [0] 2 BW25113_RS25565 protein YmjE
* * ÷ NZ_CP009273 1353713 1353746 34 2 [0] [1] 2 BW25113_RS25565/puuA protein YmjE/glutamate‑putrescine ligase
* * ÷ NZ_CP009273 1354216 1354309 94 2 [1] [1] 2 puuA glutamate‑putrescine ligase
* * ÷ NZ_CP009273 1359393 1359443 51 2 [1] [1] 2 puuB gamma‑glutamylputrescine oxidase
* * ÷ NZ_CP009273 1359978 1360043 66 2 [1] [0] 2 puuE 4‑aminobutyrate transaminase
* * ÷ NZ_CP009273 1363813 1363913 101 2 [1] [1] 2 [pspD] [pspD]
* * ÷ NZ_CP009273 1373027 1373067 41 2 [1] [1] 2 ycjT kojibiose phosphorylase
* * ÷ NZ_CP009273 1381662 1381694 33 2 [0] [1] 4 tyrR transcriptional regulator TyrR
* * ÷ NZ_CP009273 1381785 1381815 31 2 [1] [0] 2 tyrR transcriptional regulator TyrR
* * ÷ NZ_CP009273 1389804 1389840 37 2 [0] [1] 3 ynaI low conductance mechanosensitive channel YnaI
* * ÷ NZ_CP009273 1396700 1396749 50 4 [1] [1] 2 abgB p‑aminobenzoyl‑glutamate hydrolase subunit AbgB
* * ÷ NZ_CP009273 1401132 1401142 11 2 [0] [0] 3 dgcM diguanylate cyclase DgcM
* * ÷ NZ_CP009273 1403790 1403826 37 3 [1] [1] 3 dbpA ATP‑dependent RNA helicase DbpA
* * ÷ NZ_CP009273 1424081 1424199 119 2 [1] [1] 2 stfR prophage tail fiber N‑terminal domain‑containing protein
* * ÷ NZ_CP009273 1434431 1434515 85 2 [0] [1] 2 nifJ pyruvate:ferredoxin (flavodoxin) oxidoreductase
* * ÷ NZ_CP009273 1448730 1448764 35 3 [1] [1] 2 paaA 1,2‑phenylacetyl‑CoA epoxidase subunit A
* * ÷ NZ_CP009273 1450732 1450744 13 2 [0] [1] 2 paaK phenylacetate‑CoA oxygenase/reductase subunit PaaK
* * ÷ NZ_CP009273 1453629 1453669 41 2 [1] [1] 3 paaC 3‑hydroxyacyl‑CoA dehydrogenase PaaC
* * ÷ NZ_CP009273 1455105 1455133 29 2 [0] [1] 2 paaI hydroxyphenylacetyl‑CoA thioesterase PaaI
* * ÷ NZ_CP009273 1469862 1469870 9 3 [1] [0] 4 ydbD DUF2773 domain‑containing bactofilin
* * ÷ NZ_CP009273 1603046 1603050 5 2 [1] [1] 2 yneE bestrophin family protein
* * ÷ NZ_CP009273 1698522 1698536 15 2 [1] [1] 5 ydgJ oxidoreductase
* * ÷ NZ_CP009273 1704328 1704337 10 3 [0] [1] 3 rsxD electron transport complex subunit RsxD
* * ÷ NZ_CP009273 1775931 1775952 22 3 [1] [1] 2 ydiS FAD‑dependent oxidoreductase
* * ÷ NZ_CP009273 1818840 1818862 23 2 [1] [0] 2 ves environmental stress‑induced protein Ves
* * ÷ NZ_CP009273 1823362 1823373 12 3 [0] [0] 2 astD succinylglutamate‑semialdehyde dehydrogenase
* * ÷ NZ_CP009273 1832149 1832209 61 3 [1] [1] 2 ynjC ABC transporter permease subunit
* * ÷ NZ_CP009273 1876271 1876324 54 3 [1] [0] 2 dmlA multifunctional D‑malate/3‑isopropylmalate/tartarate dehydrogenase
* * ÷ NZ_CP009273 1932042 1932086 45 2 [1] [1] 2 pyk pyruvate kinase
* * ÷ NZ_CP009273 1933453 1933458 6 3 [1] [0] 2 pyk/lpxM pyruvate kinase/lauroyl‑Kdo(2)‑lipid IV(A) myristoyltransferase
* * ÷ NZ_CP009273 1972752 1972792 41 21 [0] [1] 2 flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
* * ÷ NZ_CP009273 1978334 1978339 6 2 [0] [1] 2 araG arabinose ABC transporter ATP‑binding protein AraG
* * ÷ NZ_CP009273 1984141 1984151 11 3 [1] [0] 3 tyrP tyrosine transporter TyrP
* * ÷ NZ_CP009273 2001035 2001091 57 2 [0] [1] 3 amyA alpha‑amylase
* * ÷ NZ_CP009273 2001809 2001844 36 3 [0] [1] 2 yedE selenium metabolism membrane protein YedE/FdhT
* * ÷ NZ_CP009273 2042738 2042767 30 2 [1] [1] 2 yeeJ inverse autotransporter adhesin YeeJ
* * ÷ NZ_CP009273 2047920 2047935 16 3 [1] [1] 4 shiA shikimate transporter
* * ÷ NZ_CP009273 2143538 2143553 16 2 [0] [1] 2 yegI protein kinase YegI
* * ÷ NZ_CP009273 2157528 2157545 18 2 [0] [1] 3 baeS two‑component system sensor histidine kinase BaeS
* * ÷ NZ_CP009273 2169740 2169794 55 2 [1] [1] 2 gatZ tagatose‑bisphosphate aldolase subunit GatZ
* * ÷ NZ_CP009273 2174784 2174850 67 2 [0] [1] 2 yegV carbohydrate kinase family protein
* * ÷ NZ_CP009273 2192958 2192966 9 2 [0] [1] 2 BW25113_RS25680 WGR and DUF4132 domain‑containing protein
* * ÷ NZ_CP009273 2194031 2194057 27 2 [1] [1] 4 BW25113_RS11045 DUF4132 domain‑containing protein
* * ÷ NZ_CP009273 2207743 2207806 64 3 [1] [1] 2 btsS two‑component regulatory system sensor histidine kinase BtsS
* * ÷ NZ_CP009273 2210592 2210629 38 2 [1] [1] 2 yehX glycine betaine ABC transporter ATP binding protein YehX
* * ÷ NZ_CP009273 2288373 2288404 32 2 [1] [0] 2 [ccmF]–[ccmE] [ccmF],[ccmE]
* * ÷ NZ_CP009273 2295947 2295957 11 2 [1] [0] 3 napA periplasmic nitrate reductase subunit alpha
* * ÷ NZ_CP009273 2370382 2370459 78 3 [1] [1] 2 menH 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase
* * ÷ NZ_CP009273 2371937 2371969 33 2 [1] [1] 2 menD 2‑succinyl‑5‑enolpyruvyl‑6‑hydroxy‑3‑ cyclohexene‑1‑carboxylic‑acid synthase
* * ÷ NZ_CP009273 2413791 2413805 15 2 [1] [0] 2 yfcF glutathione transferase
* * ÷ NZ_CP009273 2545527 2545541 15 3 [1] [1] 2 ypeA/amiA GNAT family acetyltransferase/N‑acetylmuramoyl‑L‑alanine amidase AmiA
* * ÷ NZ_CP009273 2563769 2563823 55 4 [1] [1] 2 eutE aldehyde dehydrogenase EutE
* * ÷ NZ_CP009273 2575026 2575081 56 2 [1] [1] 2 tkt/ypfG transketolase/DUF1176 domain‑containing protein
* * ÷ NZ_CP009273 2600578 2600645 68 2 [1] [1] 2 hyfF hydrogenase 4 subunit F
* * ÷ NZ_CP009273 2609267 2609325 59 3 [1] [1] 2 yfgO/bepA AI‑2E family transporter/beta‑barrel assembly‑enhancing protease
* * ÷ NZ_CP009273 2615537 2615561 25 2 [0] [1] 2 purM phosphoribosylformylglycinamidine cyclo‑ligase
* * ÷ NZ_CP009273 2616090 2616138 49 2 [1] [1] 2 purN phosphoribosylglycinamide formyltransferase
* * ÷ NZ_CP009273 2637069 2637089 21 2 [1] [1] 2 rlmN bifunctional tRNA (adenosine(37)‑C2)‑methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN
* * ÷ NZ_CP009273 2660142 2660165 24 2 [1] [1] 2 hcaT 3‑phenylpropionate MFS transporter
* * ÷ NZ_CP009273 2665108 2665156 49 2 [1] [0] 2 hcaB 3‑phenylpropionate‑dihydrodiol/cinnamic acid‑dihydrodiol dehydrogenase
* * ÷ NZ_CP009273 2665768 2665793 26 3 [1] [1] 2 hcaD phenylpropionate dioxygenase ferredoxin reductase subunit
* * ÷ NZ_CP009273 2669499 2669510 12 2 [1] [0] 2 yphD ABC transporter permease
* * ÷ NZ_CP009273 2687939 2688060 122 2 [1] [1] 2 purL phosphoribosylformylglycinamidine synthase
* * ÷ NZ_CP009273 2725963 2725974 12 2 [0] [1] 3 clpB ATP‑dependent chaperone ClpB
* * ÷ NZ_CP009273 2766820 2766829 10 2 [1] [1] 2 BW25113_RS13770 hypothetical protein
* * ÷ NZ_CP009273 2905226 2905314 89 2 [1] [1] 2 relA GTP pyrophosphokinase
* * ÷ NZ_CP009273 3305856 3305914 59 3 [1] [1] 2 truB tRNA pseudouridine(55) synthase TruB
* * ÷ NZ_CP009273 3351286 3351329 44 2 [1] [1] 2 gltB glutamate synthase large subunit
* * ÷ NZ_CP009273 3695337 3695362 26 2 [1] [1] 2 dppF dipeptide ABC transporter ATP‑binding subunit DppF
* * ÷ NZ_CP009273 4008480 4008489 10 2 [0] [0] 2 metE 5‑methyltetrahydropteroyltriglutamate‑‑ homocysteine S‑methyltransferase
* * ÷ NZ_CP009273 4021377 4021434 58 2 [1] [1] 2 fadA acetyl‑CoA C‑acyltransferase FadA
* * ÷ NZ_CP009273 4120568 4120629 62 3 [1] [1] 2 metL bifunctional aspartate kinase/homoserine dehydrogenase II

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 360104 =NA (NA)6 (0.540) 5/168 0.6 42.9% intergenic (‑35/+251) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
?NZ_CP009273 = 360286 8 (0.710)intergenic (‑217/+69) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
* ? NZ_CP009273 = 19727510 (0.000)21 (1.880) 14/168 0.1 100% intergenic (‑297/‑483) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
?NZ_CP009273 = 2283592 NA (NA)intergenic (‑68/‑387) BW25113_RS11435/narP IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP
* ? NZ_CP009273 = 34989487 (0.630)3 (0.290) 3/158 0.9 30.6% coding (432/1086 nt) yhfS aminotransferase class I/II‑fold pyridoxal phosphate‑dependent enzyme
?NZ_CP009273 = 3498961 7 (0.670)coding (419/1086 nt) yhfS aminotransferase class I/II‑fold pyridoxal phosphate‑dependent enzyme
* ? NZ_CP009273 3717977 =7 (0.630)3 (0.310) 3/144 0.9 33.3% coding (702/912 nt) glyQ glycine‑‑tRNA ligase subunit alpha
?NZ_CP009273 3717989 = 6 (0.630)coding (690/912 nt) glyQ glycine‑‑tRNA ligase subunit alpha
* ? NZ_CP009273 4532499 =1 (0.090)8 (0.800) 8/150 0.3 80.4% intergenic (+49/‑433) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
?NZ_CP009273 4532813 = 3 (0.300)intergenic (+363/‑119) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
* ? NZ_CP009273 = 45325071 (0.090)9 (0.900) 8/150 0.3 82.2% intergenic (+57/‑425) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
?NZ_CP009273 = 4532803 3 (0.300)intergenic (+353/‑129) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA