mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 32 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,710,374 | 0 | T | G | 66.7% | 2.3 / 16.0 | 18 | G156G (GGT→GGG) | yiaD | OmpA family lipoprotein |
| * | NZ_CP009273 | 3,710,377 | 0 | T | G | 66.7% | 6.7 / 15.5 | 18 | G157G (GGT→GGG) | yiaD | OmpA family lipoprotein |
| * | NZ_CP009273 | 3,781,385 | 0 | T | G | 64.7% | 5.1 / 14.1 | 17 | G396G (GGT→GGG) | envC | murein hydrolase activator EnvC |
| * | NZ_CP009273 | 2,678,659 | 0 | A | C | 60.0% | 12.1 / 15.2 | 15 | Y70D (TAT→GAT) | glyA | serine hydroxymethyltransferase |
| * | NZ_CP009273 | 3,090,826 | 0 | T | G | 60.0% | 6.4 / 12.2 | 15 | G67G (GGT→GGG) | hemW | radical SAM family heme chaperone HemW |
| * | NZ_CP009273 | 2,343,100 | 0 | A | C | 58.8% | 9.2 / 18.1 | 17 | pseudogene (36/105 nt) | BW25113_RS26180 | hypothetical protein |
| * | NZ_CP009273 | 3,214,118 | 0 | C | A | 58.8% | 4.3 / 24.4 | 17 | A422A (GCC→GCA) | ygjG | putrescine aminotransferase |
| * | NZ_CP009273 | 646,265 | 0 | T | G | 58.3% | ‑2.0 / 13.2 | 12 | T350P (ACC→CCC) | citC | [citrate (pro‑3S)‑lyase] ligase |
| * | NZ_CP009273 | 1,725,079 | 0 | T | G | 58.3% | 7.4 / 11.4 | 12 | V579G (GTA→GGA) | lhr | ATP‑dependent helicase |
| * | NZ_CP009273 | 1,725,059 | 0 | T | G | 57.1% | 9.0 / 15.5 | 14 | G572G (GGT→GGG) | lhr | ATP‑dependent helicase |
| * | NZ_CP009273 | 2,089,571 | 0 | A | G | 56.2% | 0.3 / 13.5 | 16 | I83V (ATT→GTT) | hisF | imidazole glycerol phosphate synthase subunit HisF |
| * | NZ_CP009273 | 3,750,765 | 0 | A | C | 56.2% | 13.2 / 16.5 | 16 | G141G (GGT→GGG) | yiaY | L‑threonine dehydrogenase |
| * | NZ_CP009273 | 3,214,126 | 0 | T | C | 55.0% | 12.1 / 24.0 | 20 | I425T (ATC→ACC) | ygjG | putrescine aminotransferase |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 55.0% | 0.6 / 22.4 | 20 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 371,042 | 0 | A | C | 54.5% | 2.7 / 12.9 | 11 | Q43P (CAG→CCG) | mhpT | 3‑(3‑hydroxy‑phenyl)propionate transporter |
| * | NZ_CP009273 | 383,792 | 0 | A | C | 54.5% | 6.7 / 10.8 | 11 | N181T (AAC→ACC) | tauD | taurine dioxygenase |
| * | NZ_CP009273 | 1,571,380 | 0 | A | C | 54.5% | 3.5 / 10.0 | 11 | V166G (GTA→GGA) | yddB | TonB‑dependent receptor plug domain‑containing protein |
| * | NZ_CP009273 | 1,819,318 | 0 | G | A | 54.5% | ‑0.0 / 10.8 | 11 | intergenic (‑124/+79) | ves/spy | environmental stress‑induced protein Ves/ATP‑independent periplasmic protein‑refolding chaperone Spy |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 54.5% | 23.4 / 40.7 | 22 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 822,955 | 0 | T | G | 53.8% | 9.2 / 16.3 | 13 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |