mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 28 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 115,871 | 0 | T | G | 62.5% | 7.2 / 14.5 | 16 | V35G (GTG→GGG) | ampE | beta‑lactamase regulator AmpE |
| * | NZ_CP009273 | 3,214,109 | 0 | C | A | 61.5% | 4.6 / 17.1 | 13 | L419L (CTC→CTA) | ygjG | putrescine aminotransferase |
| * | NZ_CP009273 | 3,348,810 | 0 | A | C | 61.1% | 15.6 / 19.4 | 18 | T243P (ACC→CCC) | gltB | glutamate synthase large subunit |
| * | NZ_CP009273 | 371,034 | 0 | C | G | 60.0% | 6.4 / 10.7 | 10 | G40G (GGC→GGG) | mhpT | 3‑(3‑hydroxy‑phenyl)propionate transporter |
| * | NZ_CP009273 | 349,999 | 0 | T | G | 58.3% | 2.2 / 12.2 | 12 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NZ_CP009273 | 4,558,329 | 0 | C | A | 58.3% | ‑1.5 / 11.4 | 12 | R3L (CGT→CTT) | mdtM | multidrug efflux MFS transporter MdtM |
| * | NZ_CP009273 | 3,348,816 | 0 | A | C | 57.9% | 15.7 / 23.2 | 19 | T245P (ACC→CCC) | gltB | glutamate synthase large subunit |
| * | NZ_CP009273 | 69,900 | 0 | A | C | 57.1% | 5.9 / 11.8 | 14 | V370G (GTG→GGG) | thiP | thiamine/thiamine pyrophosphate ABC transporter permease ThiP |
| * | NZ_CP009273 | 2,216,130 | 0 | G | T | 57.1% | ‑3.1 / 10.7 | 14 | C156F (TGT→TTT) | dld | D‑lactate dehydrogenase |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 56.5% | 3.0 / 26.2 | 23 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,596,719 | 0 | A | G | 56.2% | 0.4 / 13.0 | 16 | S267P (TCC→CCC) | rsmC | 16S rRNA (guanine(1207)‑N(2))‑methyltransferase RsmC |
| * | NZ_CP009273 | 296,422 | 0 | G | C | 55.6% | 8.0 / 24.8 | 18 | P75R (CCG→CGG) | paoC | aldehyde oxidoreductase molybdenum‑binding subunit PaoC |
| * | NZ_CP009273 | 349,993 | 0 | T | G | 54.5% | 8.6 / 10.5 | 11 | V526G (GTT→GGT) | prpE | propionate‑‑CoA ligase |
| * | NZ_CP009273 | 702,597 | 0 | T | G | 54.5% | 7.0 / 10.4 | 11 | V350G (GTG→GGG) | glnS | glutamine‑‑tRNA ligase |
| * | NZ_CP009273 | 1,570,326 | 0 | T | C | 54.5% | 4.2 / 10.1 | 11 | G517G (GGA→GGG) | yddB | TonB‑dependent receptor plug domain‑containing protein |
| * | NZ_CP009273 | 1,570,334 | 0 | C | A | 54.5% | 8.1 / 16.5 | 11 | D515Y (GAT→TAT) | yddB | TonB‑dependent receptor plug domain‑containing protein |
| * | NZ_CP009273 | 3,401,190 | 0 | C | G | 54.5% | 6.1 / 12.9 | 12 | G75G (GGC→GGG) | panF | sodium/pantothenate symporter |
| * | NZ_CP009273 | 3,571,661 | 0 | A | C | 54.5% | 10.0 / 12.4 | 11 | G142G (GGT→GGG) | gntR | gluconate operon transcriptional repressor GntR |
| * | NZ_CP009273 | 1,329,948 | 0 | T | G | 53.8% | 9.0 / 10.3 | 13 | intergenic (+24/‑140) | BW25113_RS25560/acnA | hypothetical protein/aconitate hydratase AcnA |
| * | NZ_CP009273 | 2,216,154 | 0 | T | G | 53.8% | 5.9 / 11.1 | 13 | V164G (GTG→GGG) | dld | D‑lactate dehydrogenase |