mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,791 | G→A | intergenic (+160/‑32) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
| RA | 49,903 | T→G | D27E (GAT→GAG) | folA → | type 3 dihydrofolate reductase |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| RA | 3,390,883 | Δ1 bp | coding (272/1470 nt) | rng ← | ribonuclease G |
| RA | 3,632,398 | A→C | Q466P (CAG→CCG) | pitA → | inorganic phosphate transporter PitA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 255700 | 260589 | 4890 | 29 [1] | [1] 2 | [phoE]–[yafX] | [phoE],proB,proA,BW25113_RS01235,ykfI,yafW,ykfH,ykfG,[yafX] |
| * | * | ÷ | NZ_CP009273 | 260658 | 263767 | 3110 | 2 [1] | [1] 2 | [yafX]–yafZ | [yafX],ykfF,BW25113_RS01265,BW25113_RS25425,BW25113_RS25430,BW25113_RS25435,yafZ |
| * | * | ÷ | NZ_CP009273 | 263858 | 264745 | 888 | 2 [1] | [0] 2 | [ykfA] | [ykfA] |
| * | * | ÷ | NZ_CP009273 | 264798 | 266919–266252 | 1455–2122 | 2 [0] | [1] 2 | perR–[BW25113_RS01300] | perR,BW25113_RS01295,[BW25113_RS01300] |
| * | * | ÷ | NZ_CP009273 | 356981 | 357567 | 587 | 4 [0] | [0] 3 | lacA | galactoside O‑acetyltransferase |
| * | * | ÷ | NZ_CP009273 | 488912 | 488920 | 9 | 2 [0] | [1] 2 | dnaX | DNA polymerase III subunit gamma/tau |
| * | * | ÷ | NZ_CP009273 | 989348 | 989360 | 13 | 2 [1] | [1] 2 | ssuB | aliphatic sulfonates ABC transporter ATP‑binding protein |
| * | * | ÷ | NZ_CP009273 | 1137520 | 1137561 | 42 | 2 [1] | [1] 2 | rne | ribonuclease E |
| * | * | ÷ | NZ_CP009273 | 1320872 | 1320940 | 69 | 2 [1] | [0] 2 | [yciQ] | [yciQ] |
| * | * | ÷ | NZ_CP009273 | 1357511 | 1357553 | 43 | 3 [1] | [1] 2 | puuC | aldehyde dehydrogenase PuuC |
| * | * | ÷ | NZ_CP009273 | 2368161 | 2368209 | 49 | 3 [1] | [1] 2 | menE | o‑succinylbenzoate‑‑CoA ligase |
| * | * | ÷ | NZ_CP009273 | 2505242 | 2505277 | 36 | 2 [1] | [1] 7 | mntH | Nramp family divalent metal transporter |
| * | * | ÷ | NZ_CP009273 | 2559761 | 2559791 | 31 | 3 [0] | [1] 2 | eutA | ethanolamine ammonia‑lyase reactivating factor EutA |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 255699 | 1 (0.050) | 28 (1.280) | 19/170 | 0.2 | 96.5% | coding (113/1056 nt) | phoE | phosphoporin PhoE |
| ? | NZ_CP009273 | 269666 = | NA (NA) | intergenic (+2/+146) | ykfC/BW25113_RS01325 | reverse transcriptase domain‑containing protein/IS5‑like element IS5 family transposase | |||||
| * | ? | NZ_CP009273 | 295395 = | 12 (0.550) | 4 (0.210) | 4/150 | 1.3 | 28.0% | coding (1251/2199 nt) | paoC | aldehyde oxidoreductase molybdenum‑binding subunit PaoC |
| ? | NZ_CP009273 | 295468 = | 10 (0.520) | coding (1178/2199 nt) | paoC | aldehyde oxidoreductase molybdenum‑binding subunit PaoC | |||||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 42 (1.920) | 23/170 | 0.1 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 360168 = | NA (NA) | 8 (0.410) | 5/152 | 1.2 | NA | intergenic (‑99/+187) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | 360191 = | NA (NA) | intergenic (‑122/+164) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 376748 = | NA (NA) | 4 (0.200) | 4/152 | 1.4 | NA | intergenic (‑5/‑59) | BW25113_RS01855/BW25113_RS01870 | transferase/IS3‑like element IS2 family transposase |
| ? | NZ_CP009273 | 376768 = | NA (NA) | intergenic (‑25/‑39) | BW25113_RS01855/BW25113_RS01870 | transferase/IS3‑like element IS2 family transposase | |||||
| * | ? | NZ_CP009273 | 619757 = | 12 (0.550) | 3 (0.150) | 3/152 | 1.6 | 21.6% | coding (210/957 nt) | fepB | Fe2+‑enterobactin ABC transporter substrate‑binding protein |
| ? | NZ_CP009273 | 619788 = | 11 (0.560) | coding (179/957 nt) | fepB | Fe2+‑enterobactin ABC transporter substrate‑binding protein | |||||
| * | ? | NZ_CP009273 | 3022788 = | 10 (0.460) | 3 (0.150) | 3/156 | 1.6 | 23.8% | coding (1503/1920 nt) | ygfT | formate‑dependent uric acid utilization protein YgfT |
| ? | NZ_CP009273 | 3022819 = | 10 (0.500) | coding (1472/1920 nt) | ygfT | formate‑dependent uric acid utilization protein YgfT | |||||
| * | ? | NZ_CP009273 | 4532499 = | 1 (0.050) | 22 (1.130) | 17/152 | 0.2 | 88.2% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | 4532813 = | 5 (0.260) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
| * | ? | NZ_CP009273 | = 4532507 | 1 (0.050) | 18 (0.920) | 12/152 | 0.4 | 85.9% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | = 4532803 | 5 (0.260) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||