mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 36 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 832,212 | 0 | T | G | 62.5% | 7.9 / 11.9 | 17 | F136V (TTT→GTT) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 899,438 | 0 | A | C | 58.8% | 7.8 / 16.2 | 17 | G162G (GGT→GGG) | ybjP | lipoprotein |
| * | NZ_CP009273 | 832,048 | 0 | T | G | 58.3% | 20.4 / 29.1 | 24 | V81G (GTC→GGC) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 1,536,376 | 0 | A | C | 58.3% | 7.4 / 10.8 | 12 | F158V (TTT→GTT) | narZ | nitrate reductase Z subunit alpha |
| * | NZ_CP009273 | 2,769,918 | 0 | T | G | 57.1% | 9.6 / 12.6 | 14 | R58R (CGT→CGG) | yfjY | RadC family protein |
| * | NZ_CP009273 | 2,832,718 | 0 | T | G | 56.2% | 10.5 / 17.5 | 16 | intergenic (‑95/‑165) | ascG/ascF | DNA‑binding transcriptional regulator AscG/PTS cellobiose/arbutin/salicin transporter subunit IIBC |
| * | NZ_CP009273 | 760,175 | 0 | T | G | 55.6% | 16.3 / 21.5 | 18 | G180G (GGT→GGG) | sucD | succinate‑‑CoA ligase subunit alpha |
| * | NZ_CP009273 | 760,181 | 0 | G | C | 55.6% | 8.6 / 21.7 | 18 | P182P (CCG→CCC) | sucD | succinate‑‑CoA ligase subunit alpha |
| * | NZ_CP009273 | 1,598,494 | 0 | C | T | 55.6% | ‑1.8 / 18.1 | 18 | S64L (TCG→TTG) | lsrD | autoinducer 2 ABC transporter permease LsrD |
| * | NZ_CP009273 | 2,897,051 | 0 | C | A | 55.6% | ‑1.3 / 10.9 | 9 | intergenic (+318/+1055) | ygcE/queE | FGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE |
| * | NZ_CP009273 | 2,897,070 | 0 | C | A | 55.6% | 2.9 / 11.6 | 9 | intergenic (+337/+1036) | ygcE/queE | FGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE |
| * | NZ_CP009273 | 3,175,957 | 0 | A | T | 55.6% | ‑0.6 / 16.3 | 18 | I17F (ATT→TTT) | zupT | zinc transporter ZupT |
| * | NZ_CP009273 | 4,061,105 | 0 | A | G | 55.6% | 3.2 / 18.6 | 18 | L511P (CTG→CCG) | yihQ | sulfoquinovosidase |
| * | NZ_CP009273 | 687,303 | 0 | A | G | 54.5% | 10.9 / 28.1 | 22 | intergenic (‑63/+27) | corC/ybeY | CNNM family magnesium/cobalt transport protein CorC/rRNA maturation RNase YbeY |
| * | NZ_CP009273 | 2,794,496 | 0 | T | G | 54.5% | 9.3 / 10.6 | 12 | V58G (GTG→GGG) | nrdI | class Ib ribonucleoside‑diphosphate reductase assembly flavoprotein NrdI |
| * | NZ_CP009273 | 3,344,212 | 0 | A | C | 54.5% | 17.2 / 29.8 | 22 | S725A (TCA→GCA) | arcB | aerobic respiration two‑component sensor histidine kinase ArcB |
| * | NZ_CP009273 | 4,351,348 | 0 | T | G | 54.2% | 10.2 / 26.2 | 24 | H135P (CAC→CCC) | cadC | lysine decarboxylation/transport transcriptional activator CadC |
| * | NZ_CP009273 | 322,525 | 0 | A | C | 53.8% | 12.4 / 13.7 | 13 | V145G (GTG→GGG) | betA | choline dehydrogenase |
| * | NZ_CP009273 | 1,003,731 | 0 | T | A | 53.8% | 3.4 / 14.3 | 13 | H144Q (CAT→CAA) | rlmKL | bifunctional 23S rRNA (guanine(2069)‑N(7))‑methyltransferase RlmK/23S rRNA (guanine(2445)‑N(2))‑methyltransferase RlmL |
| * | NZ_CP009273 | 2,254,480 | 0 | A | C | 53.8% | 4.1 / 10.2 | 13 | V137G (GTG→GGG) | fruA | PTS fructose transporter subunit IIBC |