mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | KT2440 | 6,076,448 | 0 | T | G | 57.9% | 2.2 / 12.4 | 19 | T141P (ACC→CCC) | purK | N5‑carboxyaminoimidazole ribonucleotidesynthase |
| * | KT2440 | 5,724,345 | 0 | A | C | 57.7% | ‑3.4 / 10.1 | 29 | intergenic (‑145/+25) | pip/CJ019_05371 | Proline iminopeptidase/hypothetical protein |
| * | KT2440 | 3,440,363 | 0 | A | C | 56.5% | 1.7 / 17.2 | 24 | A24A (GCA→GCC) | CJ019_03266 | hypothetical protein |
| * | KT2440 | 5,689,816 | 0 | A | C | 55.2% | ‑1.4 / 14.5 | 30 | S236R (AGC→CGC) | pyrC' | Dihydroorotase‑like protein |
| * | KT2440 | 4,135,607 | 0 | A | C | 53.3% | ‑2.1 / 12.3 | 30 | Q32P (CAG→CCG) | tgnC | (Z)‑2‑((N‑methylformamido)methylene)‑5‑hydroxybu tyrolactone dehydrogenase |
| * | KT2440 | 2,856,857 | 0 | A | C | 52.9% | 4.8 / 12.3 | 19 | Q287P (CAG→CCG) | hdfR_4 | HTH‑type transcriptional regulator HdfR |
| * | KT2440 | 2,391,020 | 0 | T | G | 51.8% | 4.6 / 15.2 | 29 | Q563P (CAG→CCG) | bvgS | Virulence sensor protein BvgS |
| * | KT2440 | 1,393,936 | 0 | T | G | 45.6% | 60.6 / 17.3 | 57 | intergenic (+46/‑123) | cpoB/queE | Cell division coordinator CpoB/7‑carboxy‑7‑deazaguanine synthase |
| * | KT2440 | 5,334,688 | 0 | T | G | 32.6% | 60.1 / 11.8 | 46 | intergenic (+231/‑32) | folK/panB | 2‑amino‑4‑hydroxy‑6‑hydroxymethyldihydropteridine pyrophosphokinase/3‑methyl‑2‑oxobutanoatehydroxymethyltransferase |
| * | KT2440 | 5,334,693 | 0 | A | T | 31.2% | 62.6 / 20.1 | 48 | intergenic (+236/‑27) | folK/panB | 2‑amino‑4‑hydroxy‑6‑hydroxymethyldihydropteridine pyrophosphokinase/3‑methyl‑2‑oxobutanoatehydroxymethyltransferase |
| * | KT2440 | 1,393,942 | 0 | C | G | 30.8% | 76.1 / 10.4 | 57 | intergenic (+52/‑117) | cpoB/queE | Cell division coordinator CpoB/7‑carboxy‑7‑deazaguanine synthase |
| * | KT2440 | 3,130,718 | 0 | T | G | 27.8% | 50.0 / 11.2 | 36 | intergenic (+89/‑201) | livF_3/oprD_7 | High‑affinity branched‑chain amino acidtransport ATP‑binding protein LivF/Porin D |
| * | KT2440 | 4,807,656 | 0 | G | C | 27.1% | 99.6 / 10.2 | 49 | S66T (AGC→ACC) | mcbC | Microcin B17‑processing protein McbC |
| * | KT2440 | 1,393,946 | 0 | A | T | 25.0% | 74.1 / 10.1 | 56 | intergenic (+56/‑113) | cpoB/queE | Cell division coordinator CpoB/7‑carboxy‑7‑deazaguanine synthase |
| * | KT2440 | 6,039,837 | 0 | C | A | 23.8% | 92.8 / 10.6 | 63 | A37S (GCC→TCC) | puuD_3 | Gamma‑glutamyl‑gamma‑aminobutyrate hydrolasePuuD |
| * | KT2440 | 4,807,649 | 0 | G | C | 23.5% | 111.9 / 10.8 | 51 | A64P (GCC→CCC) | mcbC | Microcin B17‑processing protein McbC |
| * | KT2440 | 4,002,651 | 0 | G | T | 20.4% | 95.0 / 11.1 | 54 | S39S (TCC→TCA) | CJ019_03781 | hypothetical protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | KT2440 | = 5982592 | 25 (0.520) | 7 (0.150) | 6/238 | 3.8 | 26.2% | intergenic (+51/‑638) | kefC_3/CJ019_05604 | Glutathione‑regulated potassium‑efflux systemprotein KefC/hypothetical protein |
| ? | KT2440 | 5982814 = | 16 (0.350) | intergenic (+273/‑416) | kefC_3/CJ019_05604 | Glutathione‑regulated potassium‑efflux systemprotein KefC/hypothetical protein | |||||
| * | ? | KT2440 | 1821217 = | 45 (0.930) | 3 (0.070) | 3/234 | 5.1 | 6.6% | coding (1015/1068 nt) | recA | Protein RecA |
| ? | KT2440 | = 1821213 | 43 (0.960) | coding (1011/1068 nt) | recA | Protein RecA | |||||