mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 22 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | KT2440 | 1,524,732 | 0 | T | G | 62.5% | 0.1 / 17.9 | 24 | Q67P (CAG→CCG) | CJ019_01439 | hypothetical protein |
| * | KT2440 | 5,262,767 | 0 | A | C | 58.3% | ‑5.9 / 12.4 | 24 | intergenic (+9/+27) | uacT_2/radA | Uric acid transporter UacT/DNA repair protein RadA |
| * | KT2440 | 4,245,145 | 0 | A | C | 56.4% | ‑4.6 / 15.8 | 46 | L178R (CTG→CGG) | CJ019_03982 | Crotonyl‑CoA hydratase |
| * | KT2440 | 5,975,253 | 0 | A | C | 56.2% | 3.6 / 12.7 | 17 | Q688P (CAG→CCG) | sasA_19 | Adaptive‑response sensory‑kinase SasA |
| * | KT2440 | 2,496,789 | 0 | A | C | 55.0% | 0.6 / 11.6 | 20 | intergenic (+91/‑142) | speB/CJ019_02354 | Agmatinase/hypothetical protein |
| * | KT2440 | 4,805,733 | 0 | T | G | 53.3% | 6.7 / 13.0 | 15 | intergenic (+153/‑596) | dsbG/CJ019_04513 | Thiol:disulfide interchange protein DsbG/hypothetical protein |
| * | KT2440 | 4,135,607 | 0 | A | C | 46.0% | 7.4 / 16.9 | 51 | Q32P (CAG→CCG) | tgnC | (Z)‑2‑((N‑methylformamido)methylene)‑5‑hydroxybu tyrolactone dehydrogenase |
| * | KT2440 | 3,973,794 | 0 | A | C | 45.7% | 82.2 / 31.1 | 81 | L161R (CTG→CGG) | cobN | Aerobic cobaltochelatase subunit CobN |
| * | KT2440 | 1,720,970 | 0 | A | C | 40.9% | 29.0 / 10.8 | 44 | F84V (TTC→GTC) | plsB | Glycerol‑3‑phosphate acyltransferase |
| * | KT2440 | 3,491,337 | 0 | G | C | 40.6% | 29.0 / 13.1 | 32 | intergenic (‑699/+22) | CJ019_03306/CJ019_03307 | hypothetical protein/hypothetical protein |
| * | KT2440 | 3,875,878 | 0 | A | C | 38.8% | 110.0 / 20.2 | 85 | T298P (ACC→CCC) | ttgI_2 | Toluene efflux pump outer membrane protein TtgI |
| * | KT2440 | 4,245,134 | 0 | A | C | 32.6% | 37.7 / 10.8 | 49 | L182V (TTG→GTG) | CJ019_03982 | Crotonyl‑CoA hydratase |
| * | KT2440 | 6,039,837 | 0 | C | A | 30.9% | 60.5 / 21.2 | 68 | A37S (GCC→TCC) | puuD_3 | Gamma‑glutamyl‑gamma‑aminobutyrate hydrolasePuuD |
| * | KT2440 | 1,393,936 | 0 | T | G | 28.6% | 114.9 / 14.7 | 63 | intergenic (+46/‑123) | cpoB/queE | Cell division coordinator CpoB/7‑carboxy‑7‑deazaguanine synthase |
| * | KT2440 | 932,026 | 0 | C | G | 28.1% | 119.1 / 11.9 | 57 | A2216P (GCA→CCA) | CJ019_00881 | hypothetical protein |
| * | KT2440 | 126,279 | 0 | G | A | 26.8% | 96.8 / 34.6 | 56 | A581T (GCG→ACG) | CJ019_00134 | hypothetical protein |
| * | KT2440 | 3,138,367 | 0 | T | G | 26.5% | 57.6 / 11.8 | 34 | F240V (TTT→GTT) | rbsC_2 | Ribose import permease protein RbsC |
| * | KT2440 | 3,875,884 | 0 | A | C | 26.4% | 162.5 / 13.4 | 91 | N300H (AAC→CAC) | ttgI_2 | Toluene efflux pump outer membrane protein TtgI |
| * | KT2440 | 2,308,321 | 0 | C | G | 25.0% | 111.1 / 10.4 | 48 | A230P (GCC→CCC) | fucA | L‑fuculose phosphate aldolase |
| * | KT2440 | 1,393,946 | 0 | A | T | 23.8% | 98.6 / 17.5 | 63 | intergenic (+56/‑113) | cpoB/queE | Cell division coordinator CpoB/7‑carboxy‑7‑deazaguanine synthase |