mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 4,393,061 | 0 | T | G | 46.7% | 29.6 / 14.7 | 30 | V211G (GTG→GGG) | aidB | isovaleryl CoA dehydrogenase |
| * | REL606 | 1,688,990 | 0 | A | C | 46.3% | 49.6 / 17.1 | 41 | T92P (ACC→CCC) | nth | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) |
| * | REL606 | 2,174,648 | 0 | T | G | 40.0% | 54.0 / 17.0 | 40 | V409G (GTG→GGG) | dld | D‑lactate dehydrogenase, FAD‑binding, NADH independent |
| * | REL606 | 1,484,105 | 0 | A | G | 37.5% | 66.6 / 26.3 | 48 | G55G (GGA→GGG) | ydcU | predicted spermidine/putrescine transporter subunit |
| * | REL606 | 275,418 | 0 | A | C | 37.0% | 79.2 / 13.2 | 46 | F528V (TTT→GTT) | yagW | predicted receptor |
| * | REL606 | 2,631,772 | 0 | A | C | 36.5% | 94.6 / 16.8 | 52 | intergenic (‑267/‑141) | rpoE/nadB | RNA polymerase, sigma 24 (sigma E) factor/L‑aspartate oxidase |
| * | REL606 | 716,832 | 0 | T | G | 33.3% | 65.3 / 13.4 | 39 | A31A (GCA→GCC) | ECB_00663 | hypothetical protein |
| * | REL606 | 2,563,085 | 0 | T | G | 31.9% | 74.7 / 19.7 | 47 | T193T (ACA→ACC) | yfgA | hypothetical protein |
| * | REL606 | 1,875,483 | 0 | G | C | 31.6% | 148.7 / 71.1 | 79 | intergenic (+156/‑28) | yeaB/sdaA | predicted NUDIX hydrolase/L‑serine deaminase I |
| * | REL606 | 3,492,082 | 0 | T | G | 31.6% | 118.4 / 12.0 | 57 | V490G (GTG→GGG) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| * | REL606 | 1,882,526 | 0 | T | G | 31.1% | 119.6 / 18.6 | 74 | I21S (ATT→AGT) | manZ | mannose‑specific enzyme IID component of PTS |
| * | REL606 | 4,195,874 | 0 | A | C | 30.9% | 113.9 / 12.6 | 55 | T318P (ACC→CCC) | aceB | malate synthase |
| * | REL606 | 2,296,329 | 0 | A | C | 23.8% | 163.8 / 17.8 | 63 | intergenic (‑149/‑66) | inaA/yfaH | hypothetical protein/hypothetical protein |
| Marginal new junction evidence (lowest skew 10 of 52 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2038943 = | 57 (0.970) | 30 (0.540) | 12/142 | 4.0 | 30.3% | coding (6/822 nt) | wbbB | putative glycosyltransferase WbbB |
| ? | REL606 | 2039511 = | 84 (1.520) | coding (184/747 nt) | wbbA | putative glycosyltransferase WbbA | |||||
| * | ? | REL606 | = 2680757 | 105 (1.790) | 18 (0.330) | 10/138 | 4.4 | 17.7% | coding (283/897 nt) | ECB_02511 | ParB family protein |
| ? | REL606 | = 2681225 | 71 (1.320) | coding (751/897 nt) | ECB_02511 | ParB family protein | |||||
| * | ? | REL606 | 2041054 = | 60 (1.020) | 7 (0.130) | 6/136 | 5.8 | 10.7% | coding (330/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041468 = | 62 (1.170) | coding (1353/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | 2041035 = | 52 (0.890) | 8 (0.150) | 6/136 | 5.8 | 13.3% | coding (349/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041485 = | 57 (1.070) | coding (1336/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | = 2038560 | 72 (1.230) | 13 (0.260) | 5/126 | 5.9 | 21.1% | coding (389/822 nt) | wbbB | putative glycosyltransferase WbbB |
| ? | REL606 | = 2039125 | 37 (0.750) | coding (570/747 nt) | wbbA | putative glycosyltransferase WbbA | |||||
| * | ? | REL606 | 2040964 = | 48 (0.820) | 8 (0.150) | 6/140 | 6.0 | 12.7% | coding (420/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041449 = | 65 (1.190) | coding (1372/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | 2037848 = | 63 (1.080) | 10 (0.180) | 6/140 | 6.0 | 13.3% | coding (283/1176 nt) | wzy | O antigen polymerase (Wzy) |
| ? | REL606 | 2038306 = | 72 (1.320) | coding (643/822 nt) | wbbB | putative glycosyltransferase WbbB | |||||
| * | ? | REL606 | 570046 = | 71 (1.210) | 6 (0.110) | 6/142 | 6.1 | 7.0% | intergenic (‑110/+569) | yhhI/ECB_00526 | predicted transposase/hypothetical protein |
| ? | REL606 | 570481 = | 92 (1.660) | intergenic (‑545/+134) | yhhI/ECB_00526 | predicted transposase/hypothetical protein | |||||
| * | ? | REL606 | = 542220 | 99 (1.690) | 8 (0.160) | 5/132 | 6.2 | 8.8% | coding (1429/1527 nt) | ybcK | predicted recombinase |
| ? | REL606 | = 542813 | 79 (1.530) | coding (31/552 nt) | ybcL | predicted kinase inhibitor | |||||
| * | ? | REL606 | 3022392 = | 57 (0.970) | 9 (0.170) | 5/136 | 6.3 | 10.6% | coding (293/1140 nt) | ECB_02821 | hypothetical protein |
| ? | REL606 | 3022865 = | 100 (1.880) | intergenic (‑181/+393) | ECB_02821/ECB_02822 | hypothetical protein/bifunctional Ribulose 5‑phosphate reductase/CDP‑ribitol pyrophosphorylase | |||||