mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,642,266 | 0 | T | G | 34.1% | 103.4 / 13.2 | 44 | T193T (ACA→ACC) | rodZ | transmembrane component of cytoskeleton |
| * | NC_000913 | 4,362,048 | 0 | A | C | 33.3% | 308.8 / 20.5 | 121 | intergenic (‑114/+503) | cadC/pheU | DNA‑binding transcriptional activator CadC/tRNA‑Phe |
| * | NC_000913 | 3,738,688 | 0 | A | C | 26.1% | 158.1 / 25.3 | 69 | T398P (ACT→CCT) | malS | alpha‑amylase |
| * | NC_000913 | 2,648,148 | 0 | A | C | 24.7% | 225.6 / 11.3 | 74 | G1380G (GGT→GGG) | yfhM | alpha2‑macroglobulin |
| * | NC_000913 | 2,349,621 | 0 | A | C | 23.8% | 195.2 / 20.0 | 63 | intergenic (‑149/‑66) | inaA/yfaH | putative lipopolysaccharide kinase InaA/putative uncharacterized protein YfaH |
| * | NC_000913 | 4,296,060 | 0 | C | T | 22.9% | 337.0 / 97.2 | 131 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 4,414,906 | 0 | T | G | 21.6% | 115.2 / 10.1 | 37 | V211G (GTG→GGG) | aidB | putative acyl‑CoA dehydrogenase AidB |
| * | NC_000913 | 752,271 | 0 | A | C | 21.4% | 259.1 / 15.0 | 84 | G175G (GGT→GGG) | ybgD | putative fimbrial protein YbgD |
| * | NC_000913 | 987,014 | 0 | A | C | 20.6% | 332.3 / 11.2 | 97 | intergenic (‑32/+571) | ompF/asnS | outer membrane porin F/asparagine‑‑tRNA ligase |
| * | NC_000913 | 1,258,970 | 0 | T | G | 20.5% | 118.0 / 12.0 | 39 | G60G (GGT→GGG) | ychH | stress‑induced protein |
| Marginal new junction evidence (lowest skew 10 of 16 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2643100 | 68 (0.940) | 9 (0.210) | 4/40 | 2.8 | 15.2% | intergenic (‑256/+29) | rodZ/rlmN | transmembrane component of cytoskeleton/23S rRNA m(2)A2503 methyltransferase/tRNA m(2)A37 methyltransferase |
| ? | NC_000913 | = 2643110 | 60 (1.410) | intergenic (‑266/+19) | rodZ/rlmN | transmembrane component of cytoskeleton/23S rRNA m(2)A2503 methyltransferase/tRNA m(2)A37 methyltransferase | |||||
| * | ? | NC_000913 | = 2725836 | 136 (1.880) | 6 (0.110) | 5/52 | 3.2 | 5.6% | intergenic (‑90/+233) | kgtP/rrfG | alpha‑ketoglutarate:H(+) symporter/5S ribosomal RNA |
| ? | NC_000913 | = 2725840 | 99 (1.790) | intergenic (‑94/+229) | kgtP/rrfG | alpha‑ketoglutarate:H(+) symporter/5S ribosomal RNA | |||||
| * | ? | NC_000913 | 790857 = | 58 (0.800) | 4 (0.080) | 4/46 | 3.2 | 8.7% | coding (173/1047 nt) | galT | galactose‑1‑phosphate uridylyltransferase |
| ? | NC_000913 | 790898 = | 45 (0.920) | coding (132/1047 nt) | galT | galactose‑1‑phosphate uridylyltransferase | |||||
| * | ? | NC_000913 | 3654539 = | 99 (1.370) | 5 (0.110) | 3/44 | 3.6 | 6.8% | intergenic (+12/‑144) | slp/dctR | starvation lipoprotein/putative DNA‑binding transcriptional regulator DctR |
| ? | NC_000913 | 3654568 = | 74 (1.580) | intergenic (+41/‑115) | slp/dctR | starvation lipoprotein/putative DNA‑binding transcriptional regulator DctR | |||||
| * | ? | NC_000913 | = 1326780 | 80 (1.110) | 4 (0.090) | 3/44 | 3.6 | 7.7% | intergenic (+139/‑72) | yciQ/rluB | DUF2207 domain‑containing protein YciQ/23S rRNA pseudouridine(2605) synthase |
| ? | NC_000913 | = 1326787 | 44 (0.940) | intergenic (+146/‑65) | yciQ/rluB | DUF2207 domain‑containing protein YciQ/23S rRNA pseudouridine(2605) synthase | |||||
| * | ? | NC_000913 | 3263132 = | 75 (1.040) | 3 (0.060) | 3/46 | 3.7 | 5.4% | coding (529/1209 nt) | tdcD | propionate kinase |
| ? | NC_000913 | 3263186 = | 54 (1.100) | coding (475/1209 nt) | tdcD | propionate kinase | |||||
| * | ? | NC_000913 | 1899984 = | 39 (0.540) | 5 (0.100) | 3/46 | 3.7 | 10.9% | coding (1558/1599 nt) | pdeD | putative c‑di‑GMP phosphodiesterase PdeD |
| ? | NC_000913 | 1900017 = | 55 (1.120) | coding (1591/1599 nt) | pdeD | putative c‑di‑GMP phosphodiesterase PdeD | |||||
| * | ? | NC_000913 | = 2860427 | 108 (1.490) | 4 (0.080) | 3/48 | 3.9 | 5.5% | intergenic (+11/+40) | pphB/ygbI | phosphoprotein phosphatase 2/putative DeoR‑type DNA‑binding transcriptional regulator YgbI |
| ? | NC_000913 | = 2860433 | 62 (1.220) | intergenic (+17/+34) | pphB/ygbI | phosphoprotein phosphatase 2/putative DeoR‑type DNA‑binding transcriptional regulator YgbI | |||||
| * | ? | NC_000913 | 4434563 = | NA (NA) | 5 (0.090) | 3/52 | 4.1 | NA | noncoding (11/36 nt) | REP334b | REP334b |
| ? | NC_000913 | 4434590 = | NA (NA) | noncoding (10/27 nt) | REP334c | REP334c | |||||
| * | ? | NC_000913 | = 4343292 | 40 (0.550) | 3 (0.050) | 3/52 | 4.1 | 8.0% | intergenic (+26/‑77) | melA/melB | alpha‑galactosidase/melibiose:H(+)/Na(+)/Li(+) symporter |
| ? | NC_000913 | = 4343302 | 38 (0.690) | intergenic (+36/‑67) | melA/melB | alpha‑galactosidase/melibiose:H(+)/Na(+)/Li(+) symporter | |||||